Wall clock time and date at job start Sun Mar 7 2021 04:57:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.35453 * 125.56167 * 2 1 4 4 C 1.50697 * 126.06775 * 0.24720 * 3 2 1 5 5 O 1.42901 * 109.46893 * 235.81364 * 4 3 2 6 6 Si 1.86299 * 109.47313 * 115.81222 * 4 3 2 7 7 C 1.39834 * 107.86423 * 179.97438 * 3 2 1 8 8 C 1.50697 * 126.46078 * 179.97438 * 7 3 2 9 9 C 1.37870 * 107.08319 * 0.02562 * 7 3 2 10 10 C 1.46688 * 126.23272 * 180.02562 * 9 7 3 11 11 O 1.21692 * 120.00058 * 359.97438 * 10 9 7 12 12 N 1.34774 * 120.00058 * 179.97438 * 10 9 7 13 13 C 1.46493 * 120.00176 * 185.04765 * 12 10 9 14 14 C 1.50695 * 112.85253 * 65.88860 * 13 12 10 15 15 N 1.34773 * 119.99980 * 35.61078 * 14 13 12 16 16 O 1.21285 * 120.00246 * 215.61872 * 14 13 12 17 17 C 1.53787 * 113.61271 * 294.69249 * 13 12 10 18 18 C 1.53782 * 87.07902 * 270.88375 * 17 13 12 19 19 H 1.08999 * 113.61090 * 220.01522 * 18 17 13 20 20 O 1.42902 * 113.61711 * 89.20287 * 18 17 13 21 21 C 1.53780 * 87.08203 * 334.56627 * 18 17 13 22 22 N 1.35530 * 125.56643 * 179.97438 * 2 1 3 23 23 H 1.09000 * 109.47670 * 92.62089 * 1 2 3 24 24 H 1.09004 * 109.47088 * 212.61953 * 1 2 3 25 25 H 1.09002 * 109.47099 * 332.61890 * 1 2 3 26 26 H 1.09004 * 109.47505 * 355.80759 * 4 3 2 27 27 H 0.96705 * 114.00390 * 180.02562 * 5 4 3 28 28 H 1.48493 * 110.00131 * 305.30459 * 6 4 3 29 29 H 1.48507 * 109.99822 * 66.62076 * 6 4 3 30 30 H 1.09004 * 109.46699 * 89.99883 * 8 7 3 31 31 H 1.09002 * 109.47353 * 210.00204 * 8 7 3 32 32 H 1.09002 * 109.46842 * 330.00582 * 8 7 3 33 33 H 0.96998 * 119.99957 * 5.04004 * 12 10 9 34 34 H 0.96995 * 120.00167 * 5.27768 * 15 14 13 35 35 H 0.97003 * 119.99866 * 185.27254 * 15 14 13 36 36 H 1.08998 * 113.61199 * 25.43129 * 17 13 12 37 37 H 1.08996 * 113.61640 * 156.25042 * 17 13 12 38 38 H 0.96689 * 114.00401 * 180.02562 * 20 18 17 39 39 H 1.09001 * 113.61326 * 270.88300 * 21 18 17 40 40 H 1.09003 * 113.61298 * 139.98390 * 21 18 17 41 41 H 0.97004 * 125.67197 * 359.97438 * 22 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2948 1.1019 0.0000 4 6 1.8198 2.5321 0.0053 5 8 2.3843 3.2255 -1.1095 6 14 2.3555 3.3585 1.5866 7 6 3.6269 0.6768 0.0006 8 6 4.8485 1.5592 0.0003 9 6 3.6122 -0.7018 0.0004 10 6 4.7860 -1.5815 0.0013 11 8 5.9049 -1.1030 0.0020 12 7 4.6253 -2.9196 0.0015 13 6 5.7927 -3.7975 0.1141 14 6 6.4865 -3.6806 1.4467 15 7 5.7652 -3.4738 2.5661 16 8 7.6941 -3.7725 1.5118 17 6 6.7481 -3.7091 -1.0878 18 6 5.9077 -4.8212 -1.7373 19 1 6.5027 -5.5645 -2.2681 20 8 4.8114 -4.3318 -2.5123 21 6 5.5157 -5.2486 -0.3131 22 7 2.2953 -1.1025 0.0005 23 1 -0.3634 -0.0470 -1.0265 24 1 -0.3633 -0.8656 0.5540 25 1 -0.3633 0.9125 0.4726 26 1 0.7324 2.5541 -0.0660 27 1 2.1213 4.1542 -1.1693 28 1 1.8819 2.5743 2.7553 29 1 3.8353 3.4781 1.6212 30 1 5.1428 1.7727 1.0279 31 1 5.6643 1.0502 -0.5131 32 1 4.6220 2.4931 -0.5142 33 1 3.7368 -3.3014 -0.0728 34 1 4.7960 -3.4765 2.5261 35 1 6.2152 -3.3222 3.4120 36 1 6.6970 -2.7577 -1.6170 37 1 7.7697 -4.0106 -0.8565 38 1 4.2789 -5.0265 -2.9230 39 1 6.2001 -5.9723 0.1296 40 1 4.4697 -5.5399 -0.2170 41 1 1.9833 -2.0210 0.0013 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12297754.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:41 Heat of formation + Delta-G solvation = -88.557187 kcal Electronic energy + Delta-G solvation = -27192.706717 eV Core-core repulsion = 23268.457953 eV Total energy + Delta-G solvation = -3924.248764 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 310.141 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.90274 -42.11665 -39.89041 -39.22547 -37.62295 -36.28942 -34.92946 -34.33829 -33.84214 -32.81728 -29.34115 -28.08289 -27.15520 -26.93547 -26.01066 -23.05592 -22.31944 -20.94766 -20.60558 -19.99319 -19.52784 -19.21063 -18.28429 -18.09070 -18.01029 -16.99593 -16.78687 -16.50929 -16.07918 -15.93526 -15.62536 -15.18722 -15.12234 -15.10982 -14.77109 -14.47003 -14.28478 -13.95853 -13.86549 -13.62725 -13.47456 -13.33455 -13.28706 -13.20773 -12.67012 -12.49863 -12.48999 -12.04995 -11.85714 -11.47810 -11.14449 -11.13296 -10.88373 -10.51766 -10.27191 -9.63953 -9.11152 -4.93828 0.19901 1.14990 1.21968 1.56329 1.69695 1.71706 1.94902 2.04017 2.17120 2.38347 2.94526 3.19119 3.33732 3.55260 3.57363 3.61575 3.79507 3.85916 3.99795 4.13832 4.24882 4.33918 4.42157 4.51788 4.53890 4.56873 4.62367 4.67740 4.74472 4.75327 4.83551 4.87982 4.96131 5.09649 5.15018 5.19624 5.53732 5.63840 5.70188 6.15490 6.23621 6.41602 6.84821 6.92732 7.04518 7.07106 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 C 0.098 3.902 3 C -0.202 4.202 4 C -0.023 4.023 5 O -0.565 6.565 6 Si 0.744 3.256 7 C -0.078 4.078 8 C -0.089 4.089 9 C -0.077 4.077 10 C 0.593 3.407 11 O -0.557 6.557 12 N -0.680 5.680 13 C 0.130 3.870 14 C 0.523 3.477 15 N -0.835 5.835 16 O -0.579 6.579 17 C -0.133 4.133 18 C 0.095 3.905 19 H 0.098 0.902 20 O -0.560 6.560 21 C -0.134 4.134 22 N -0.513 5.513 23 H 0.095 0.905 24 H 0.094 0.906 25 H 0.099 0.901 26 H 0.103 0.897 27 H 0.400 0.600 28 H -0.302 1.302 29 H -0.305 1.305 30 H 0.047 0.953 31 H 0.060 0.940 32 H 0.077 0.923 33 H 0.417 0.583 34 H 0.413 0.587 35 H 0.406 0.594 36 H 0.057 0.943 37 H 0.104 0.896 38 H 0.402 0.598 39 H 0.117 0.883 40 H 0.123 0.877 41 H 0.435 0.565 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.730 -3.872 -0.125 14.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.022 4.022 3 C -0.208 4.208 4 C -0.134 4.134 5 O -0.374 6.374 6 Si 0.652 3.348 7 C -0.087 4.087 8 C -0.146 4.146 9 C -0.189 4.189 10 C 0.382 3.618 11 O -0.435 6.435 12 N -0.335 5.335 13 C 0.040 3.960 14 C 0.306 3.694 15 N -0.397 5.397 16 O -0.458 6.458 17 C -0.172 4.172 18 C 0.036 3.964 19 H 0.116 0.884 20 O -0.369 6.369 21 C -0.172 4.172 22 N -0.112 5.112 23 H 0.114 0.886 24 H 0.113 0.887 25 H 0.117 0.883 26 H 0.121 0.879 27 H 0.250 0.750 28 H -0.230 1.230 29 H -0.233 1.233 30 H 0.066 0.934 31 H 0.079 0.921 32 H 0.095 0.905 33 H 0.256 0.744 34 H 0.243 0.757 35 H 0.237 0.763 36 H 0.076 0.924 37 H 0.122 0.878 38 H 0.253 0.747 39 H 0.135 0.865 40 H 0.141 0.859 41 H 0.277 0.723 Dipole moment (debyes) X Y Z Total from point charges -11.221 -3.904 0.570 11.895 hybrid contribution -0.103 -1.223 0.142 1.235 sum -11.324 -5.127 0.712 12.451 Atomic orbital electron populations 1.20722 0.83862 1.05811 1.04944 1.20852 0.95303 0.84639 1.01415 1.18868 0.91904 0.94788 1.15206 1.23900 1.01043 0.89884 0.98590 1.86480 1.74297 1.29117 1.47489 0.95988 0.79073 0.86123 0.73649 1.19982 0.95581 0.91896 1.01217 1.20328 0.94704 0.98816 1.00715 1.19777 0.83859 0.93344 1.21915 1.17171 0.87186 0.81923 0.75510 1.90872 1.25875 1.75734 1.51029 1.45093 1.09337 1.03871 1.75210 1.21450 0.88358 0.94981 0.91260 1.20901 0.87037 0.74336 0.87081 1.43685 1.11665 1.73924 1.10459 1.90737 1.15985 1.51733 1.87336 1.23336 0.98920 1.00483 0.94463 1.22547 0.88506 0.94710 0.90687 0.88389 1.86494 1.43423 1.38697 1.68293 1.23911 1.06089 0.90612 0.96637 1.41670 1.03745 1.09361 1.56470 0.88628 0.88700 0.88261 0.87915 0.74966 1.22996 1.23261 0.93432 0.92116 0.90468 0.74411 0.75707 0.76295 0.92379 0.87801 0.74721 0.86497 0.85888 0.72292 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 0.96 10.08 71.24 0.72 1.68 16 2 C 0.10 -0.13 7.13 41.34 0.29 0.17 16 3 C -0.20 -1.06 4.51 -20.12 -0.09 -1.15 16 4 C -0.02 0.00 2.75 71.23 0.20 0.19 16 5 O -0.56 -0.95 11.65 -148.98 -1.74 -2.68 16 6 Si 0.74 1.05 31.53 68.60 2.16 3.22 16 7 C -0.08 -0.88 5.86 -19.57 -0.11 -0.99 16 8 C -0.09 -1.32 8.11 71.23 0.58 -0.74 16 9 C -0.08 -0.53 7.05 40.35 0.28 -0.25 16 10 C 0.59 5.34 7.34 86.45 0.63 5.97 16 11 O -0.56 -10.57 13.34 -4.32 -0.06 -10.63 16 12 N -0.68 0.18 4.18 -427.85 -1.79 -1.61 16 13 C 0.13 0.33 0.94 3.39 0.00 0.34 16 14 C 0.52 4.31 6.75 87.66 0.59 4.90 16 15 N -0.83 -0.76 8.78 -173.54 -1.52 -2.29 16 16 O -0.58 -10.39 16.75 -3.05 -0.05 -10.45 16 17 C -0.13 -0.95 6.63 31.12 0.21 -0.75 16 18 C 0.09 -0.25 5.27 31.12 0.16 -0.09 16 19 H 0.10 -0.57 8.14 -2.39 -0.02 -0.59 16 20 O -0.56 1.85 13.09 -148.98 -1.95 -0.10 16 21 C -0.13 0.82 7.20 31.12 0.22 1.04 16 22 N -0.51 1.35 5.99 -171.93 -1.03 0.32 16 23 H 0.10 -1.07 8.14 -2.39 -0.02 -1.09 16 24 H 0.09 -1.31 8.14 -2.38 -0.02 -1.33 16 25 H 0.10 -1.13 7.03 -2.39 -0.02 -1.15 16 26 H 0.10 -0.70 6.56 -2.38 -0.02 -0.71 16 27 H 0.40 -3.56 8.74 -74.05 -0.65 -4.21 16 28 H -0.30 -2.27 7.11 99.48 0.71 -1.56 16 29 H -0.30 -3.33 6.24 99.48 0.62 -2.71 16 30 H 0.05 0.78 7.65 -2.38 -0.02 0.76 16 31 H 0.06 1.13 6.48 -2.39 -0.02 1.12 16 32 H 0.08 1.05 6.69 -2.39 -0.02 1.04 16 33 H 0.42 -3.53 7.81 -92.71 -0.72 -4.26 16 34 H 0.41 -2.28 8.46 -92.71 -0.78 -3.06 16 35 H 0.41 0.18 8.93 -92.71 -0.83 -0.65 16 36 H 0.06 0.83 7.20 -2.39 -0.02 0.81 16 37 H 0.10 1.00 7.34 -2.39 -0.02 0.98 16 38 H 0.40 -5.23 9.12 -74.06 -0.68 -5.91 16 39 H 0.12 -0.72 8.10 -2.39 -0.02 -0.74 16 40 H 0.12 -1.59 8.09 -2.39 -0.02 -1.61 16 41 H 0.44 -4.92 8.20 -92.71 -0.76 -5.68 16 Total: 0.00 -38.86 339.10 -5.59 -44.46 By element: Atomic # 1 Polarization: -27.25 SS G_CDS: -3.31 Total: -30.56 kcal Atomic # 6 Polarization: 6.63 SS G_CDS: 3.69 Total: 10.32 kcal Atomic # 7 Polarization: 0.77 SS G_CDS: -4.34 Total: -3.57 kcal Atomic # 8 Polarization: -20.06 SS G_CDS: -3.79 Total: -23.86 kcal Atomic # 14 Polarization: 1.05 SS G_CDS: 2.16 Total: 3.22 kcal Total: -38.86 -5.59 -44.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12297754.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.102 kcal (2) G-P(sol) polarization free energy of solvation -38.863 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.592 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.557 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds