Wall clock time and date at job start Sun Mar 7 2021 04:57:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42902 * 1 3 3 C 1.35657 * 116.99966 * 2 1 4 4 C 1.38405 * 120.12051 * 0.02562 * 3 2 1 5 5 C 1.38723 * 120.03307 * 180.02562 * 4 3 2 6 6 O 1.35718 * 119.86558 * 179.97438 * 5 4 3 7 7 C 1.42899 * 116.99667 * 359.97438 * 6 5 4 8 8 C 1.39145 * 120.27336 * 359.97063 * 5 4 3 9 9 C 1.50696 * 119.88115 * 180.02562 * 8 5 4 10 10 O 1.42901 * 109.47564 * 284.98155 * 9 8 5 11 11 Si 1.86305 * 109.47465 * 164.97649 * 9 8 5 12 12 C 1.37584 * 120.23970 * 359.97438 * 8 5 4 13 13 C 1.39811 * 119.96623 * 0.02562 * 12 8 5 14 14 C 1.47304 * 120.14122 * 179.97438 * 13 12 8 15 15 O 1.21618 * 120.00430 * 180.02562 * 14 13 12 16 16 N 1.34780 * 119.99496 * 0.02562 * 14 13 12 17 17 C 1.46497 * 119.99930 * 175.05710 * 16 14 13 18 18 C 1.50701 * 112.85172 * 67.24851 * 17 16 14 19 19 N 1.34777 * 119.99591 * 36.13340 * 18 17 16 20 20 O 1.21280 * 119.99981 * 216.13220 * 18 17 16 21 21 C 1.53787 * 113.61104 * 296.05356 * 17 16 14 22 22 C 1.53784 * 87.08098 * 270.88307 * 21 17 16 23 23 H 1.08992 * 113.61514 * 220.01741 * 22 21 17 24 24 O 1.42901 * 113.61013 * 89.19905 * 22 21 17 25 25 C 1.53782 * 87.08331 * 334.57079 * 22 21 17 26 26 H 1.09000 * 109.47203 * 299.99634 * 1 2 3 27 27 H 1.09005 * 109.47358 * 59.99779 * 1 2 3 28 28 H 1.08996 * 109.46899 * 179.97438 * 1 2 3 29 29 H 1.08005 * 119.98313 * 359.97438 * 4 3 2 30 30 H 1.08998 * 109.46978 * 179.97438 * 7 6 5 31 31 H 1.09000 * 109.46843 * 299.99523 * 7 6 5 32 32 H 1.08995 * 109.47525 * 59.99289 * 7 6 5 33 33 H 1.09005 * 109.47064 * 44.97965 * 9 8 5 34 34 H 0.96700 * 113.99690 * 59.99315 * 10 9 8 35 35 H 1.48494 * 109.99918 * 300.00427 * 11 9 8 36 36 H 1.48504 * 109.99592 * 61.31940 * 11 9 8 37 37 H 1.07999 * 120.01725 * 179.74284 * 12 8 5 38 38 H 0.97006 * 119.99873 * 355.05011 * 16 14 13 39 39 H 0.96999 * 120.00593 * 355.00355 * 19 18 17 40 40 H 0.97003 * 119.99599 * 175.00219 * 19 18 17 41 41 H 1.08995 * 113.61217 * 25.43579 * 21 17 16 42 42 H 1.09003 * 113.60929 * 156.33804 * 21 17 16 43 43 H 0.96705 * 113.99895 * 180.02562 * 24 22 21 44 44 H 1.08998 * 113.60941 * 270.88605 * 25 22 21 45 45 H 1.08997 * 113.61419 * 139.97917 * 25 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0449 1.2087 0.0000 4 6 1.2935 2.3711 0.0005 5 6 1.9252 3.6061 0.0000 6 8 1.1851 4.7437 0.0000 7 6 -0.2360 4.5931 0.0000 8 6 3.3145 3.6835 -0.0005 9 6 3.9915 5.0298 -0.0005 10 8 3.8939 5.6121 -1.3018 11 14 5.7863 4.8225 0.4542 12 6 4.0724 2.5352 0.0001 13 6 3.4462 1.2851 0.0007 14 6 4.2539 0.0533 0.0008 15 8 3.7066 -1.0328 0.0008 16 7 5.5995 0.1298 0.0008 17 6 6.4026 -1.0905 0.1102 18 6 6.2805 -1.9818 -1.0989 19 7 6.1652 -1.4390 -2.3271 20 8 6.2862 -3.1873 -0.9666 21 6 6.2163 -1.8329 1.4441 22 6 7.3609 -0.9666 1.9958 23 1 8.0477 -1.5113 2.6435 24 8 6.9208 0.2674 2.5665 25 6 7.8552 -0.8350 0.5455 26 1 -0.3633 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 0.2148 2.3165 0.0005 30 1 -0.7056 5.5767 0.0005 31 1 -0.5431 4.0439 -0.8900 32 1 -0.5431 4.0438 0.8899 33 1 3.5055 5.6809 0.7263 34 1 2.9857 5.7494 -1.6041 35 1 5.9013 4.2179 1.8056 36 1 6.4676 3.9627 -0.5467 37 1 5.1504 2.5994 -0.0044 38 1 6.0362 0.9930 -0.0717 39 1 6.0877 -0.4773 -2.4272 40 1 6.1596 -2.0102 -3.1111 41 1 5.2548 -1.6409 1.9201 42 1 6.4589 -2.8943 1.3905 43 1 7.6362 0.8169 2.9149 44 1 8.5457 -1.6236 0.2464 45 1 8.2167 0.1626 0.2963 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12297780.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:44 Heat of formation + Delta-G solvation = -161.600637 kcal Electronic energy + Delta-G solvation = -33636.943088 eV Core-core repulsion = 29009.362309 eV Total energy + Delta-G solvation = -4627.580780 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -42.53259 -41.90863 -40.38394 -39.75986 -39.19189 -38.42278 -37.02460 -36.19368 -34.85950 -34.02383 -32.32492 -31.69795 -29.07153 -28.33438 -27.21505 -26.91343 -26.10731 -24.75277 -23.11843 -22.42987 -21.74094 -20.49728 -20.12175 -19.21379 -18.93448 -18.59443 -18.11203 -18.05517 -17.65019 -17.32017 -17.19200 -16.68896 -16.67177 -16.44293 -16.19355 -15.87833 -15.82093 -15.80440 -15.39728 -15.10838 -15.01014 -14.43181 -14.28401 -13.96050 -13.91850 -13.64250 -13.53622 -13.33159 -13.27540 -12.70617 -12.62691 -12.61017 -12.44737 -12.14781 -11.97304 -11.77812 -11.46298 -11.34687 -11.15652 -11.09556 -10.90157 -10.83556 -10.19628 -10.04515 -9.31592 -4.74897 -0.42439 -0.04677 1.28775 1.40251 1.53643 1.74373 1.82828 1.94369 1.97570 2.05427 2.36359 2.50282 2.97046 3.21606 3.27901 3.37771 3.41465 3.52478 3.60764 3.63679 3.86202 3.95190 3.97999 4.04593 4.12784 4.18821 4.22575 4.26641 4.26966 4.41564 4.54697 4.55707 4.63421 4.64651 4.64726 4.72053 4.77428 4.78969 4.86026 4.91982 5.14606 5.23499 5.70819 5.89620 6.13305 6.20671 6.30796 6.65349 6.85674 7.02544 7.12509 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.010 3.990 2 O -0.306 6.306 3 C 0.215 3.785 4 C -0.305 4.305 5 C 0.211 3.789 6 O -0.310 6.310 7 C 0.012 3.988 8 C -0.198 4.198 9 C -0.081 4.081 10 O -0.545 6.545 11 Si 0.794 3.206 12 C -0.007 4.007 13 C -0.226 4.226 14 C 0.566 3.434 15 O -0.548 6.548 16 N -0.689 5.689 17 C 0.128 3.872 18 C 0.527 3.473 19 N -0.835 5.835 20 O -0.580 6.580 21 C -0.129 4.129 22 C 0.096 3.904 23 H 0.102 0.898 24 O -0.562 6.562 25 C -0.139 4.139 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.111 0.889 29 H 0.169 0.831 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.067 0.933 33 H 0.082 0.918 34 H 0.373 0.627 35 H -0.259 1.259 36 H -0.265 1.265 37 H 0.148 0.852 38 H 0.412 0.588 39 H 0.410 0.590 40 H 0.407 0.593 41 H 0.056 0.944 42 H 0.107 0.893 43 H 0.401 0.599 44 H 0.120 0.880 45 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.718 10.310 0.474 10.346 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 O -0.217 6.217 3 C 0.166 3.834 4 C -0.324 4.324 5 C 0.163 3.837 6 O -0.222 6.222 7 C -0.082 4.082 8 C -0.199 4.199 9 C -0.188 4.188 10 O -0.351 6.351 11 Si 0.693 3.307 12 C -0.025 4.025 13 C -0.230 4.230 14 C 0.355 3.645 15 O -0.426 6.426 16 N -0.345 5.345 17 C 0.037 3.963 18 C 0.310 3.690 19 N -0.397 5.397 20 O -0.458 6.458 21 C -0.168 4.168 22 C 0.036 3.964 23 H 0.120 0.880 24 O -0.370 6.370 25 C -0.177 4.177 26 H 0.091 0.909 27 H 0.093 0.907 28 H 0.129 0.871 29 H 0.186 0.814 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.085 0.915 33 H 0.100 0.900 34 H 0.221 0.779 35 H -0.185 1.185 36 H -0.191 1.191 37 H 0.165 0.835 38 H 0.251 0.749 39 H 0.241 0.759 40 H 0.238 0.762 41 H 0.075 0.925 42 H 0.125 0.875 43 H 0.252 0.748 44 H 0.138 0.862 45 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges 1.129 8.004 0.823 8.125 hybrid contribution -1.963 -0.294 -0.591 2.071 sum -0.833 7.710 0.232 7.758 Atomic orbital electron populations 1.23493 0.76314 1.05790 1.02823 1.86375 1.23417 1.25874 1.85994 1.18963 0.90857 0.85010 0.88555 1.21460 1.02154 0.90632 1.18196 1.18830 0.90485 0.85258 0.89108 1.86047 1.21435 1.28068 1.86665 1.23523 0.75690 1.06340 1.02669 1.19705 0.90939 0.97217 1.12046 1.25400 1.15144 0.89710 0.88575 1.86673 1.32918 1.83251 1.32274 0.92346 0.73888 0.87136 0.77351 1.20849 0.99494 0.89667 0.92519 1.19088 0.91063 0.93422 1.19461 1.18098 0.82171 0.88602 0.75620 1.90873 1.72064 1.30037 1.49656 1.45296 1.04778 1.08787 1.75598 1.21502 0.96165 0.86014 0.92607 1.20833 0.73997 0.88316 0.85841 1.43681 1.75477 1.12788 1.07785 1.90719 1.51893 1.16582 1.86652 1.23317 1.00141 1.00043 0.93300 1.22564 0.94733 0.86083 0.93005 0.87993 1.86498 1.39062 1.31722 1.79741 1.23941 0.90898 1.06137 0.96728 0.90851 0.90712 0.87061 0.81420 0.85455 0.91141 0.91454 0.89991 0.77900 1.18458 1.19051 0.83544 0.74889 0.75950 0.76182 0.92498 0.87489 0.74780 0.86206 0.86471 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.01 0.00 9.81 113.37 1.11 1.11 16 2 O -0.31 -3.24 8.56 -68.77 -0.59 -3.82 16 3 C 0.22 1.76 6.70 22.82 0.15 1.91 16 4 C -0.31 -0.64 8.01 22.43 0.18 -0.46 16 5 C 0.21 0.37 6.62 22.60 0.15 0.52 16 6 O -0.31 0.55 9.36 -90.40 -0.85 -0.30 16 7 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 8 C -0.20 -0.52 5.28 -19.80 -0.10 -0.62 16 9 C -0.08 0.04 2.32 71.23 0.17 0.20 16 10 O -0.54 -0.36 12.65 -148.98 -1.89 -2.24 16 11 Si 0.79 -3.06 30.40 68.60 2.09 -0.98 16 12 C -0.01 -0.03 8.13 22.50 0.18 0.16 16 13 C -0.23 -1.91 5.89 -20.00 -0.12 -2.03 16 14 C 0.57 6.47 7.23 86.63 0.63 7.09 16 15 O -0.55 -11.03 13.86 16.87 0.23 -10.80 16 16 N -0.69 -2.88 4.03 -427.25 -1.72 -4.60 16 17 C 0.13 0.68 0.96 3.39 0.00 0.69 16 18 C 0.53 5.48 6.60 87.66 0.58 6.06 16 19 N -0.83 -2.92 8.83 -173.53 -1.53 -4.45 16 20 O -0.58 -11.16 16.74 -3.03 -0.05 -11.21 16 21 C -0.13 -1.09 6.66 31.12 0.21 -0.88 16 22 C 0.10 -0.08 5.27 31.12 0.16 0.08 16 23 H 0.10 -0.49 8.14 -2.39 -0.02 -0.51 16 24 O -0.56 0.53 13.09 -148.98 -1.95 -1.42 16 25 C -0.14 0.45 7.20 31.12 0.22 0.67 16 26 H 0.07 -0.25 7.66 -2.39 -0.02 -0.27 16 27 H 0.07 -0.28 7.66 -2.38 -0.02 -0.30 16 28 H 0.11 -0.13 8.14 -2.39 -0.02 -0.15 16 29 H 0.17 -0.61 4.50 -2.91 -0.01 -0.62 16 30 H 0.13 -1.50 8.14 -2.39 -0.02 -1.52 16 31 H 0.07 -0.69 7.65 -2.39 -0.02 -0.70 16 32 H 0.07 -0.62 7.65 -2.39 -0.02 -0.63 16 33 H 0.08 -0.16 7.82 -2.38 -0.02 -0.18 16 34 H 0.37 -1.06 8.59 -74.06 -0.64 -1.69 16 35 H -0.26 0.30 7.11 99.48 0.71 1.01 16 36 H -0.26 0.50 6.80 99.48 0.68 1.17 16 37 H 0.15 -0.02 3.25 -2.91 -0.01 -0.03 16 38 H 0.41 -0.60 6.71 -92.70 -0.62 -1.22 16 39 H 0.41 -0.53 8.33 -92.71 -0.77 -1.30 16 40 H 0.41 0.74 8.93 -92.71 -0.83 -0.09 16 41 H 0.06 0.85 7.39 -2.39 -0.02 0.83 16 42 H 0.11 1.10 7.35 -2.39 -0.02 1.08 16 43 H 0.40 -4.23 9.12 -74.05 -0.68 -4.91 16 44 H 0.12 -0.50 8.10 -2.39 -0.02 -0.52 16 45 H 0.12 -1.03 8.10 -2.39 -0.02 -1.05 16 Total: 0.00 -31.89 371.12 -4.01 -35.90 By element: Atomic # 1 Polarization: -9.21 SS G_CDS: -2.40 Total: -11.60 kcal Atomic # 6 Polarization: 10.89 SS G_CDS: 4.64 Total: 15.52 kcal Atomic # 7 Polarization: -5.80 SS G_CDS: -3.25 Total: -9.05 kcal Atomic # 8 Polarization: -24.71 SS G_CDS: -5.09 Total: -29.80 kcal Atomic # 14 Polarization: -3.06 SS G_CDS: 2.09 Total: -0.98 kcal Total: -31.89 -4.01 -35.90 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12297780.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -125.698 kcal (2) G-P(sol) polarization free energy of solvation -31.889 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.586 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.015 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.903 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.601 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds