Wall clock time and date at job start Sun Mar 7 2021 04:57:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34782 * 1 3 3 O 1.21284 * 120.00091 * 2 1 4 4 C 1.50696 * 119.99482 * 180.02562 * 2 1 3 5 5 N 1.46498 * 112.85214 * 313.80476 * 4 2 1 6 6 C 1.34786 * 119.99659 * 298.35719 * 5 4 2 7 7 O 1.21568 * 120.00090 * 354.97540 * 6 5 4 8 8 C 1.47685 * 119.99677 * 174.96719 * 6 5 4 9 9 C 1.39625 * 120.16854 * 359.72378 * 8 6 5 10 10 C 1.37898 * 119.87595 * 179.78679 * 9 8 6 11 11 C 1.50707 * 119.89190 * 180.23395 * 10 9 8 12 12 O 1.42897 * 109.46813 * 300.25993 * 11 10 9 13 13 Si 1.86300 * 109.47255 * 180.25991 * 11 10 9 14 14 C 1.38414 * 120.22079 * 0.49179 * 10 9 8 15 15 C 1.38248 * 120.34000 * 359.74237 * 14 10 9 16 16 C 1.38281 * 120.11416 * 0.02562 * 15 14 10 17 17 F 1.35103 * 120.11014 * 179.97438 * 16 15 14 18 18 C 1.53781 * 113.61381 * 182.49722 * 4 2 1 19 19 C 1.53780 * 87.08441 * 220.01954 * 18 4 2 20 20 H 1.08994 * 113.69277 * 139.99105 * 19 18 4 21 21 O 1.42904 * 113.61242 * 270.88210 * 19 18 4 22 22 C 1.53781 * 87.07856 * 25.43178 * 19 18 4 23 23 H 0.96998 * 120.00195 * 175.15250 * 1 2 3 24 24 H 0.97007 * 119.99404 * 354.87860 * 1 2 3 25 25 H 0.97000 * 120.00232 * 118.36233 * 5 4 2 26 26 H 1.08002 * 120.06111 * 0.02562 * 9 8 6 27 27 H 1.08999 * 109.46632 * 60.25945 * 11 10 9 28 28 H 0.96698 * 114.00012 * 179.97438 * 12 11 10 29 29 H 1.48499 * 109.99661 * 298.67774 * 13 11 10 30 30 H 1.48491 * 110.00271 * 60.00065 * 13 11 10 31 31 H 1.08002 * 119.83065 * 179.76383 * 14 10 9 32 32 H 1.07996 * 119.94526 * 179.97438 * 15 14 10 33 33 H 1.09008 * 113.61382 * 334.57069 * 18 4 2 34 34 H 1.08999 * 113.61629 * 105.46876 * 18 4 2 35 35 H 0.96696 * 113.99612 * 277.49580 * 21 19 18 36 36 H 1.09001 * 113.61122 * 220.02015 * 22 19 18 37 37 H 1.08994 * 113.61424 * 89.11880 * 22 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9543 1.0503 0.0000 4 6 2.1012 -1.3051 -0.0006 5 7 1.5763 -2.2655 0.9733 6 6 1.5924 -1.9690 2.2880 7 8 2.1245 -0.9463 2.6741 8 6 0.9636 -2.8864 3.2596 9 6 0.3463 -4.0589 2.8195 10 6 -0.2351 -4.9135 3.7323 11 6 -0.8968 -6.1818 3.2581 12 8 -1.9565 -5.8575 2.3560 13 14 -1.5874 -7.1063 4.7208 14 6 -0.2178 -4.6076 5.0821 15 6 0.3866 -3.4467 5.5274 16 6 0.9781 -2.5822 4.6247 17 9 1.5682 -1.4475 5.0598 18 6 3.6283 -1.1349 0.0609 19 6 3.7190 -2.2903 -0.9499 20 1 4.4798 -2.1429 -1.7164 21 8 3.7887 -3.5806 -0.3397 22 6 2.3029 -1.8994 -1.4045 23 1 -0.4850 -0.8370 -0.0710 24 1 -0.4849 0.8368 0.0750 25 1 1.2172 -3.1147 0.6720 26 1 0.3277 -4.2981 1.7664 27 1 -0.1630 -6.8054 2.7476 28 1 -2.4278 -6.6277 2.0098 29 1 -0.4908 -7.4770 5.6509 30 1 -2.5891 -6.2667 5.4254 31 1 -0.6784 -5.2795 5.7912 32 1 0.3961 -3.2141 6.5820 33 1 3.9776 -0.1808 -0.3340 34 1 4.0553 -1.3726 1.0352 35 1 4.6769 -3.8319 -0.0517 36 1 1.6598 -2.7544 -1.6132 37 1 2.2897 -1.1544 -2.2000 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12335834.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:48 Heat of formation + Delta-G solvation = -135.288404 kcal Electronic energy + Delta-G solvation = -26731.964433 eV Core-core repulsion = 22584.510283 eV Total energy + Delta-G solvation = -4147.454149 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.105 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.17102 -42.40110 -40.92529 -39.71952 -39.19182 -37.42474 -36.20755 -34.80276 -34.33801 -32.67122 -32.31781 -27.26019 -27.03755 -26.61975 -25.49127 -23.38525 -22.40733 -21.65053 -20.51362 -19.37252 -19.14730 -18.57784 -18.28879 -18.13597 -17.93269 -17.65554 -17.04232 -16.78931 -16.45067 -16.16112 -15.92261 -15.72165 -15.53551 -15.43931 -15.12671 -14.68531 -14.56357 -14.10972 -13.96775 -13.81137 -13.56491 -13.43817 -13.24833 -12.69262 -12.62006 -12.48141 -11.98812 -11.73826 -11.50918 -11.32149 -10.92671 -10.81345 -10.55229 -10.38116 -10.18379 -9.88050 -4.90057 -0.68337 -0.17992 1.22298 1.31314 1.43819 1.69376 1.77665 1.99851 2.28267 2.43934 2.87308 2.96780 3.18116 3.21998 3.23907 3.41144 3.45772 3.63401 3.67122 3.85197 3.92244 4.06815 4.24375 4.30285 4.49983 4.57524 4.64894 4.65713 4.68290 4.73943 4.75278 4.82900 4.88142 4.99635 5.21925 5.41094 5.70457 6.16783 6.29672 6.78515 6.91243 6.96011 7.14149 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.522 3.478 3 O -0.580 6.580 4 C 0.127 3.873 5 N -0.670 5.670 6 C 0.559 3.441 7 O -0.558 6.558 8 C -0.180 4.180 9 C -0.014 4.014 10 C -0.098 4.098 11 C -0.069 4.069 12 O -0.559 6.559 13 Si 0.762 3.238 14 C -0.073 4.073 15 C -0.155 4.155 16 C 0.132 3.868 17 F -0.135 7.135 18 C -0.164 4.164 19 C 0.095 3.905 20 H 0.100 0.900 21 O -0.556 6.556 22 C -0.105 4.105 23 H 0.415 0.585 24 H 0.406 0.594 25 H 0.423 0.577 26 H 0.172 0.828 27 H 0.111 0.889 28 H 0.408 0.592 29 H -0.286 1.286 30 H -0.297 1.297 31 H 0.141 0.859 32 H 0.161 0.839 33 H 0.095 0.905 34 H 0.060 0.940 35 H 0.399 0.601 36 H 0.120 0.880 37 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.679 -12.989 -5.459 14.846 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.398 5.398 2 C 0.305 3.695 3 O -0.458 6.458 4 C 0.037 3.963 5 N -0.326 5.326 6 C 0.346 3.654 7 O -0.437 6.437 8 C -0.184 4.184 9 C -0.032 4.032 10 C -0.098 4.098 11 C -0.180 4.180 12 O -0.370 6.370 13 Si 0.668 3.332 14 C -0.091 4.091 15 C -0.173 4.173 16 C 0.112 3.888 17 F -0.113 7.113 18 C -0.204 4.204 19 C 0.036 3.964 20 H 0.118 0.882 21 O -0.364 6.364 22 C -0.143 4.143 23 H 0.246 0.754 24 H 0.237 0.763 25 H 0.264 0.736 26 H 0.190 0.810 27 H 0.129 0.871 28 H 0.260 0.740 29 H -0.213 1.213 30 H -0.224 1.224 31 H 0.158 0.842 32 H 0.179 0.821 33 H 0.114 0.886 34 H 0.079 0.921 35 H 0.249 0.751 36 H 0.138 0.862 37 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.300 -11.077 -4.341 12.651 hybrid contribution 0.580 0.899 0.679 1.267 sum -3.720 -10.178 -3.662 11.439 Atomic orbital electron populations 1.43710 1.06345 1.14077 1.75625 1.20897 0.83522 0.90902 0.74177 1.90733 1.69368 1.34634 1.51087 1.21511 0.94595 0.86908 0.93330 1.45159 1.63038 1.20798 1.03636 1.18266 0.78977 0.85079 0.83037 1.90915 1.45187 1.28038 1.79530 1.20036 1.07214 0.99247 0.91906 1.21263 0.91014 0.89278 1.01664 1.19749 0.99657 0.97771 0.92619 1.24647 0.93550 0.95999 1.03792 1.86415 1.48052 1.38751 1.63755 0.94163 0.79117 0.84314 0.75582 1.21176 0.96407 0.95553 0.95952 1.21255 1.00365 0.94551 1.01156 1.18111 0.94952 0.83513 0.92227 1.91568 1.81234 1.48541 1.89999 1.23932 0.93234 1.01605 1.01593 1.22596 0.98269 0.82069 0.93485 0.88215 1.86333 1.36934 1.32259 1.80827 1.23379 0.96994 1.02180 0.91736 0.75383 0.76301 0.73567 0.81037 0.87116 0.74038 1.21333 1.22444 0.84208 0.82122 0.88622 0.92119 0.75090 0.86184 0.85603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -0.66 8.82 -173.53 -1.53 -2.19 16 2 C 0.52 4.43 6.45 87.65 0.56 5.00 16 3 O -0.58 -10.93 16.73 -3.04 -0.05 -10.98 16 4 C 0.13 0.31 0.89 3.38 0.00 0.31 16 5 N -0.67 -0.09 4.50 -426.91 -1.92 -2.01 16 6 C 0.56 4.80 7.33 86.74 0.64 5.44 16 7 O -0.56 -10.79 14.07 -3.93 -0.06 -10.85 16 8 C -0.18 -0.96 5.88 -20.05 -0.12 -1.08 16 9 C -0.01 0.03 9.09 22.52 0.20 0.23 16 10 C -0.10 0.18 5.42 -19.90 -0.11 0.07 16 11 C -0.07 0.57 2.81 71.24 0.20 0.77 16 12 O -0.56 4.89 12.73 -148.98 -1.90 2.99 16 13 Si 0.76 -5.72 29.78 68.60 2.04 -3.67 16 14 C -0.07 -0.04 8.66 22.31 0.19 0.15 16 15 C -0.15 -0.53 10.01 22.28 0.22 -0.31 16 16 C 0.13 1.17 7.29 22.67 0.17 1.33 16 17 F -0.14 -2.12 15.55 44.97 0.70 -1.42 16 18 C -0.16 -0.82 6.63 31.12 0.21 -0.61 16 19 C 0.10 -0.36 5.28 31.12 0.16 -0.20 16 20 H 0.10 -0.71 8.14 -2.39 -0.02 -0.73 16 21 O -0.56 2.65 13.09 -148.98 -1.95 0.70 16 22 C -0.11 0.58 7.18 31.12 0.22 0.80 16 23 H 0.42 -2.46 8.76 -92.71 -0.81 -3.27 16 24 H 0.41 0.13 8.93 -92.70 -0.83 -0.70 16 25 H 0.42 -2.88 6.69 -92.71 -0.62 -3.50 16 26 H 0.17 -1.50 6.42 -2.91 -0.02 -1.51 16 27 H 0.11 -1.48 7.96 -2.39 -0.02 -1.50 16 28 H 0.41 -7.54 8.74 -74.06 -0.65 -8.19 16 29 H -0.29 0.53 7.11 99.48 0.71 1.24 16 30 H -0.30 -0.17 7.11 99.48 0.71 0.54 16 31 H 0.14 -0.21 4.86 -2.91 -0.01 -0.22 16 32 H 0.16 -0.02 8.06 -2.91 -0.02 -0.04 16 33 H 0.10 0.78 7.41 -2.38 -0.02 0.76 16 34 H 0.06 0.61 7.58 -2.39 -0.02 0.60 16 35 H 0.40 -4.04 9.12 -74.06 -0.68 -4.72 16 36 H 0.12 -1.25 8.09 -2.39 -0.02 -1.27 16 37 H 0.13 -0.86 8.09 -2.39 -0.02 -0.88 16 Total: 0.00 -34.48 321.23 -4.44 -38.92 By element: Atomic # 1 Polarization: -21.06 SS G_CDS: -2.34 Total: -23.40 kcal Atomic # 6 Polarization: 9.34 SS G_CDS: 2.56 Total: 11.90 kcal Atomic # 7 Polarization: -0.74 SS G_CDS: -3.45 Total: -4.20 kcal Atomic # 8 Polarization: -14.18 SS G_CDS: -3.95 Total: -18.13 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.70 Total: -1.42 kcal Atomic # 14 Polarization: -5.72 SS G_CDS: 2.04 Total: -3.67 kcal Total: -34.48 -4.44 -38.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12335834.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.368 kcal (2) G-P(sol) polarization free energy of solvation -34.476 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.844 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.445 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.921 kcal (6) G-S(sol) free energy of system = (1) + (5) -135.288 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds