Wall clock time and date at job start Sun Mar 7 2021 04:57:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34768 * 1 3 3 O 1.21284 * 120.00027 * 2 1 4 4 C 1.50703 * 119.99777 * 179.97438 * 2 1 3 5 5 N 1.46498 * 112.91032 * 335.08074 * 4 2 1 6 6 C 1.34770 * 120.00169 * 284.30756 * 5 4 2 7 7 O 1.21283 * 120.00094 * 5.03845 * 6 5 4 8 8 C 1.50705 * 120.00232 * 185.03438 * 6 5 4 9 9 C 1.50699 * 109.47123 * 179.97438 * 8 6 5 10 10 C 1.38230 * 120.00084 * 269.72655 * 9 8 6 11 11 C 1.38239 * 120.00134 * 179.79105 * 10 9 8 12 12 C 1.38231 * 119.99793 * 0.43795 * 11 10 9 13 13 C 1.50699 * 119.99972 * 179.83271 * 12 11 10 14 14 O 1.42907 * 109.46696 * 119.97970 * 13 12 11 15 15 Si 1.86298 * 109.47088 * 359.97438 * 13 12 11 16 16 C 1.38242 * 119.99845 * 359.81840 * 12 11 10 17 17 C 1.38230 * 119.99935 * 359.97069 * 16 12 11 18 18 C 1.53780 * 113.61272 * 203.82900 * 4 2 1 19 19 C 1.53786 * 87.08272 * 270.88692 * 18 4 2 20 20 H 1.08996 * 113.61332 * 89.11441 * 19 18 4 21 21 O 1.42905 * 113.61406 * 220.02185 * 19 18 4 22 22 C 1.53786 * 113.61019 * 106.33294 * 4 2 1 23 23 H 0.97001 * 120.00653 * 174.95578 * 1 2 3 24 24 H 0.97009 * 120.00460 * 354.95774 * 1 2 3 25 25 H 0.97003 * 119.99657 * 104.30433 * 5 4 2 26 26 H 1.08997 * 109.46448 * 300.00125 * 8 6 5 27 27 H 1.09004 * 109.46867 * 59.99815 * 8 6 5 28 28 H 1.08004 * 120.00234 * 0.02562 * 10 9 8 29 29 H 1.08000 * 120.00159 * 180.27724 * 11 10 9 30 30 H 1.09001 * 109.47292 * 239.97756 * 13 12 11 31 31 H 0.96698 * 114.00224 * 300.00094 * 14 13 12 32 32 H 1.48505 * 109.99884 * 179.97438 * 15 13 12 33 33 H 1.48489 * 110.00110 * 301.31613 * 15 13 12 34 34 H 1.07996 * 119.99512 * 180.02562 * 16 12 11 35 35 H 1.08000 * 119.99542 * 180.02562 * 17 16 12 36 36 H 1.08993 * 113.61744 * 25.43415 * 18 4 2 37 37 H 1.08999 * 113.61606 * 156.25677 * 18 4 2 38 38 H 0.96706 * 113.99398 * 179.97438 * 21 19 18 39 39 H 1.08996 * 113.60995 * 203.66300 * 22 4 2 40 40 H 1.09000 * 113.61471 * 334.57092 * 22 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9541 1.0503 0.0000 4 6 2.1011 -1.3052 0.0006 5 7 1.3264 -2.4107 0.5696 6 6 1.1617 -2.5013 1.9042 7 8 1.5758 -1.6203 2.6275 8 6 0.4628 -3.6973 2.4977 9 6 0.4104 -3.5556 3.9971 10 6 1.4332 -4.0640 4.7756 11 6 1.3872 -3.9301 6.1507 12 6 0.3139 -3.2958 6.7479 13 6 0.2619 -3.1532 8.2472 14 8 0.2154 -1.7673 8.5924 15 14 1.7798 -3.9298 8.9979 16 6 -0.7116 -2.7921 5.9696 17 6 -0.6634 -2.9221 4.5943 18 6 3.5254 -1.1939 0.5698 19 6 3.9869 -0.8668 -0.8602 20 1 3.9574 0.1970 -1.0959 21 8 5.2269 -1.4813 -1.2162 22 6 2.7523 -1.6411 -1.3515 23 1 -0.4851 -0.8367 -0.0739 24 1 -0.4851 0.8368 0.0738 25 1 0.9320 -3.0774 -0.0142 26 1 -0.5511 -3.7587 2.1024 27 1 1.0097 -4.6037 2.2377 28 1 2.2702 -4.5625 4.3093 29 1 2.1885 -4.3234 6.7587 30 1 -0.6284 -3.6529 8.6290 31 1 0.9780 -1.2592 8.2838 32 1 1.7408 -3.7953 10.4763 33 1 1.8565 -5.3637 8.6198 34 1 -1.5499 -2.2962 6.4361 35 1 -1.4643 -2.5282 3.9863 36 1 3.6528 -0.3679 1.2693 37 1 3.9178 -2.1364 0.9518 38 1 5.5222 -1.2796 -2.1147 39 1 2.9338 -2.7060 -1.4960 40 1 2.2555 -1.1759 -2.2029 There are 56 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 56 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12335836.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:51 Heat of formation + Delta-G solvation = -102.331936 kcal Electronic energy + Delta-G solvation = -25430.864955 eV Core-core repulsion = 21598.756262 eV Total energy + Delta-G solvation = -3832.108693 eV No. of doubly occupied orbitals = 56 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 307.130 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.31725 -40.85869 -39.82510 -38.95028 -37.65328 -36.38948 -34.91335 -34.22266 -33.55347 -31.92507 -29.78668 -27.13787 -26.69112 -25.43986 -23.80762 -23.07571 -22.20944 -21.29081 -20.44483 -19.19086 -18.51581 -18.35980 -18.12329 -17.70837 -17.12444 -16.78903 -16.51094 -16.32262 -15.99443 -15.96477 -15.67442 -15.48969 -15.01719 -14.73664 -14.60651 -14.49746 -14.07890 -13.83094 -13.54112 -13.32648 -13.26739 -13.03315 -12.80027 -12.50260 -12.26594 -11.98749 -11.81103 -11.70201 -11.54974 -11.01772 -10.89388 -10.78261 -10.46523 -10.22080 -9.86815 -9.59921 -5.02105 0.24082 0.46298 1.28925 1.31938 1.57942 1.58448 1.90426 1.95563 2.35120 2.77328 3.14136 3.26863 3.46713 3.48883 3.61792 3.63124 3.77903 3.81807 3.92261 4.03772 4.06181 4.22284 4.37787 4.46064 4.48634 4.56916 4.62819 4.64856 4.73261 4.79359 4.85095 4.97354 5.05195 5.09570 5.28318 5.38805 5.54527 5.59232 5.72475 6.02767 6.27546 6.49103 6.68859 6.83898 7.14507 7.23824 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.530 3.470 3 O -0.580 6.580 4 C 0.133 3.867 5 N -0.702 5.702 6 C 0.514 3.486 7 O -0.560 6.560 8 C -0.095 4.095 9 C -0.072 4.072 10 C -0.110 4.110 11 C -0.126 4.126 12 C -0.128 4.128 13 C -0.076 4.076 14 O -0.558 6.558 15 Si 0.770 3.230 16 C -0.110 4.110 17 C -0.113 4.113 18 C -0.108 4.108 19 C 0.078 3.922 20 H 0.083 0.917 21 O -0.570 6.570 22 C -0.131 4.131 23 H 0.415 0.585 24 H 0.408 0.592 25 H 0.428 0.572 26 H 0.137 0.863 27 H 0.135 0.865 28 H 0.141 0.859 29 H 0.138 0.862 30 H 0.106 0.894 31 H 0.393 0.607 32 H -0.299 1.299 33 H -0.280 1.280 34 H 0.121 0.879 35 H 0.135 0.865 36 H 0.054 0.946 37 H 0.099 0.901 38 H 0.399 0.601 39 H 0.133 0.867 40 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.544 -6.263 -7.814 10.332 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.313 3.687 3 O -0.458 6.458 4 C 0.042 3.958 5 N -0.359 5.359 6 C 0.302 3.698 7 O -0.437 6.437 8 C -0.134 4.134 9 C -0.072 4.072 10 C -0.128 4.128 11 C -0.143 4.143 12 C -0.129 4.129 13 C -0.186 4.186 14 O -0.366 6.366 15 Si 0.676 3.324 16 C -0.128 4.128 17 C -0.131 4.131 18 C -0.146 4.146 19 C 0.018 3.982 20 H 0.101 0.899 21 O -0.379 6.379 22 C -0.169 4.169 23 H 0.247 0.753 24 H 0.239 0.761 25 H 0.268 0.732 26 H 0.155 0.845 27 H 0.153 0.847 28 H 0.159 0.841 29 H 0.156 0.844 30 H 0.123 0.877 31 H 0.243 0.757 32 H -0.227 1.227 33 H -0.207 1.207 34 H 0.139 0.861 35 H 0.153 0.847 36 H 0.073 0.927 37 H 0.118 0.882 38 H 0.249 0.751 39 H 0.151 0.849 40 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -2.012 -6.101 -5.902 8.723 hybrid contribution -1.276 0.255 -0.516 1.400 sum -3.288 -5.845 -6.417 9.282 Atomic orbital electron populations 1.43595 1.06150 1.14212 1.75293 1.20467 0.83691 0.90239 0.74280 1.90759 1.69305 1.34289 1.51493 1.21257 0.90362 0.85450 0.98683 1.45750 1.55246 1.27867 1.07065 1.21177 0.78779 0.87966 0.81893 1.90813 1.50078 1.41935 1.60870 1.20772 1.04796 0.97019 0.90832 1.19581 0.94535 0.97920 0.95173 1.21252 0.98527 0.99598 0.93442 1.21163 0.97608 0.99824 0.95740 1.20394 0.95915 1.00448 0.96112 1.25202 1.11460 0.88053 0.93897 1.86445 1.50412 1.19365 1.80358 0.93593 0.83067 0.79195 0.76538 1.21081 0.98504 0.99143 0.94079 1.21244 0.98808 0.98397 0.94653 1.23109 0.92052 1.02906 0.96581 1.23170 0.83503 0.96294 0.95251 0.89916 1.86483 1.38758 1.74340 1.38271 1.23895 0.95087 1.04460 0.93496 0.75349 0.76051 0.73228 0.84464 0.84697 0.84090 0.84442 0.87678 0.75735 1.22666 1.20699 0.86142 0.84678 0.92716 0.88243 0.75085 0.84929 0.88431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 3.13 8.78 -173.54 -1.52 1.60 16 2 C 0.53 2.02 7.01 87.66 0.61 2.64 16 3 O -0.58 -7.90 16.07 -3.04 -0.05 -7.95 16 4 C 0.13 -0.23 1.11 3.39 0.00 -0.22 16 5 N -0.70 5.96 4.43 -423.92 -1.88 4.08 16 6 C 0.51 -1.51 7.49 87.66 0.66 -0.86 16 7 O -0.56 -4.71 15.06 -3.04 -0.05 -4.75 16 8 C -0.10 0.85 5.83 29.10 0.17 1.02 16 9 C -0.07 0.08 4.37 -19.87 -0.09 -0.01 16 10 C -0.11 0.00 9.70 22.27 0.22 0.22 16 11 C -0.13 -0.17 8.67 22.27 0.19 0.03 16 12 C -0.13 -0.41 5.39 -19.87 -0.11 -0.51 16 13 C -0.08 -0.20 2.82 71.24 0.20 0.00 16 14 O -0.56 -2.32 12.77 -148.98 -1.90 -4.23 16 15 Si 0.77 0.36 29.79 68.60 2.04 2.40 16 16 C -0.11 -0.41 9.61 22.27 0.21 -0.20 16 17 C -0.11 -0.10 9.70 22.27 0.22 0.11 16 18 C -0.11 -0.51 5.80 31.12 0.18 -0.33 16 19 C 0.08 0.10 4.80 31.12 0.15 0.25 16 20 H 0.08 0.36 7.31 -2.39 -0.02 0.34 16 21 O -0.57 -0.52 13.67 -148.98 -2.04 -2.56 16 22 C -0.13 0.81 7.25 31.12 0.23 1.03 16 23 H 0.42 -4.40 8.17 -92.71 -0.76 -5.16 16 24 H 0.41 -1.66 8.93 -92.70 -0.83 -2.49 16 25 H 0.43 -7.29 8.76 -92.71 -0.81 -8.10 16 26 H 0.14 -2.08 8.09 -2.39 -0.02 -2.10 16 27 H 0.14 -1.89 8.08 -2.38 -0.02 -1.91 16 28 H 0.14 -0.58 8.06 -2.91 -0.02 -0.60 16 29 H 0.14 -0.30 4.88 -2.91 -0.01 -0.32 16 30 H 0.11 0.36 7.96 -2.39 -0.02 0.34 16 31 H 0.39 -1.08 8.70 -74.06 -0.64 -1.73 16 32 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 33 H -0.28 -1.14 7.11 99.48 0.71 -0.44 16 34 H 0.12 0.44 8.06 -2.91 -0.02 0.41 16 35 H 0.14 -0.40 8.06 -2.91 -0.02 -0.43 16 36 H 0.05 0.66 7.85 -2.39 -0.02 0.65 16 37 H 0.10 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.40 -3.11 9.12 -74.05 -0.68 -3.79 16 39 H 0.13 -1.37 8.14 -2.39 -0.02 -1.39 16 40 H 0.10 -0.82 8.09 -2.39 -0.02 -0.84 16 Total: 0.00 -31.84 340.74 -5.08 -36.92 By element: Atomic # 1 Polarization: -26.17 SS G_CDS: -2.54 Total: -28.71 kcal Atomic # 6 Polarization: 0.33 SS G_CDS: 2.85 Total: 3.18 kcal Atomic # 7 Polarization: 9.09 SS G_CDS: -3.40 Total: 5.69 kcal Atomic # 8 Polarization: -15.45 SS G_CDS: -4.03 Total: -19.49 kcal Atomic # 14 Polarization: 0.36 SS G_CDS: 2.04 Total: 2.40 kcal Total: -31.84 -5.08 -36.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12335836.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.408 kcal (2) G-P(sol) polarization free energy of solvation -31.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -97.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.083 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.924 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.332 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds