Wall clock time and date at job start Sun Mar 7 2021 04:57:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21282 * 119.99763 * 2 1 4 4 C 1.50699 * 119.99822 * 179.97438 * 2 1 3 5 5 N 1.46495 * 112.85038 * 323.91174 * 4 2 1 6 6 C 1.34775 * 120.00201 * 293.53259 * 5 4 2 7 7 O 1.21595 * 119.99957 * 354.98314 * 6 5 4 8 8 C 1.47578 * 120.00065 * 174.98417 * 6 5 4 9 9 C 1.40200 * 119.83297 * 0.20796 * 8 6 5 10 10 C 1.36234 * 120.37751 * 180.28351 * 9 8 6 11 11 C 1.39870 * 119.95821 * 359.48878 * 10 9 8 12 12 C 1.40930 * 120.16973 * 0.27881 * 11 10 9 13 13 C 1.38647 * 119.48910 * 359.97438 * 12 11 10 14 14 N 1.37829 * 107.12460 * 179.97438 * 12 11 10 15 15 C 1.36559 * 109.86499 * 359.97438 * 14 12 11 16 16 C 1.34459 * 109.98424 * 0.02562 * 15 14 12 17 17 C 1.50693 * 126.48323 * 180.02562 * 16 15 14 18 18 O 1.42905 * 109.47097 * 254.97859 * 17 16 15 19 19 Si 1.86302 * 109.47410 * 14.97182 * 17 16 15 20 20 C 1.53780 * 113.61103 * 192.71417 * 4 2 1 21 21 C 1.53777 * 87.08204 * 270.80312 * 20 4 2 22 22 H 1.08999 * 113.61492 * 89.20432 * 21 20 4 23 23 O 1.42901 * 113.61318 * 220.02221 * 21 20 4 24 24 C 1.53775 * 87.08054 * 334.56698 * 21 20 4 25 25 H 0.97006 * 120.00122 * 174.96220 * 1 2 3 26 26 H 0.97003 * 120.00489 * 354.96239 * 1 2 3 27 27 H 0.97001 * 120.00226 * 113.53704 * 5 4 2 28 28 H 1.07997 * 119.81302 * 0.07707 * 9 8 6 29 29 H 1.08001 * 120.01872 * 179.76804 * 10 9 8 30 30 H 1.08006 * 120.16489 * 179.97438 * 13 12 11 31 31 H 0.97000 * 125.06501 * 179.97438 * 14 12 11 32 32 H 1.08001 * 125.00827 * 180.02562 * 15 14 12 33 33 H 1.09005 * 109.47395 * 134.97611 * 17 16 15 34 34 H 0.96695 * 114.00004 * 180.02562 * 18 17 16 35 35 H 1.48489 * 110.00282 * 178.68065 * 19 17 16 36 36 H 1.48498 * 110.00259 * 300.00485 * 19 17 16 37 37 H 1.09004 * 113.61732 * 25.35409 * 20 4 2 38 38 H 1.08998 * 113.61214 * 156.25193 * 20 4 2 39 39 H 0.96705 * 114.00453 * 180.02562 * 23 21 20 40 40 H 1.09003 * 113.61859 * 270.88567 * 24 21 20 41 41 H 1.09005 * 113.61589 * 139.98402 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1012 -1.3051 0.0006 5 7 1.4409 -2.3429 0.7962 6 6 1.3416 -2.2059 2.1333 7 8 1.8788 -1.2678 2.6899 8 6 0.5809 -3.1945 2.9219 9 6 -0.0335 -4.2772 2.2771 10 6 -0.7433 -5.1932 2.9935 11 6 -0.8527 -5.0615 4.3817 12 6 -0.2354 -3.9800 5.0414 13 6 0.4806 -3.0495 4.3039 14 7 -0.5127 -4.1124 6.3850 15 6 -1.2749 -5.2260 6.5939 16 6 -1.5154 -5.8443 5.4244 17 6 -2.3169 -7.1049 5.2255 18 8 -1.4313 -8.1975 4.9727 19 14 -3.3135 -7.4558 6.7599 20 6 3.5996 -1.1512 0.3106 21 6 3.8134 -0.9694 -1.2013 22 1 3.7383 0.0666 -1.5315 23 8 4.9814 -1.6265 -1.6973 24 6 2.5203 -1.7772 -1.4016 25 1 -0.4850 -0.8368 -0.0738 26 1 -0.4851 0.8368 0.0738 27 1 1.0751 -3.1287 0.3608 28 1 0.0536 -4.3840 1.2059 29 1 -1.2173 -6.0230 2.4904 30 1 0.9578 -2.2162 4.7982 31 1 -0.2114 -3.5050 7.0787 32 1 -1.6320 -5.5608 7.5566 33 1 -2.9890 -6.9780 4.3767 34 1 -1.8794 -9.0431 4.8343 35 1 -4.1327 -8.6789 6.5648 36 1 -2.4088 -7.6308 7.9243 37 1 3.8355 -0.2618 0.8950 38 1 4.0577 -2.0556 0.7108 39 1 5.1216 -1.5156 -2.6477 40 1 2.6834 -2.8528 -1.4696 41 1 1.8848 -1.3933 -2.1997 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12335838.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:54 Heat of formation + Delta-G solvation = -62.332662 kcal Electronic energy + Delta-G solvation = -28230.782686 eV Core-core repulsion = 24078.530300 eV Total energy + Delta-G solvation = -4152.252386 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 332.125 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -42.55630 -42.21736 -40.32050 -39.02195 -37.90154 -37.53039 -36.47929 -34.88731 -34.00405 -33.34916 -30.78688 -30.58297 -27.15373 -26.80394 -26.32362 -24.61913 -23.63965 -22.90968 -21.49087 -20.60675 -20.46560 -19.30769 -19.23962 -18.47848 -18.41684 -18.19218 -17.72703 -17.22116 -16.80880 -16.32099 -16.08098 -15.97468 -15.84249 -15.43373 -15.28630 -15.01844 -14.90851 -14.77451 -14.64233 -14.49208 -13.84631 -13.76910 -13.56567 -13.34013 -13.15397 -12.71753 -12.60121 -12.55223 -12.18877 -11.89470 -11.79254 -11.55009 -11.11780 -10.98436 -10.79646 -10.77094 -10.32659 -10.32049 -9.36824 -8.79789 -4.84471 -0.33999 0.38890 1.24787 1.34963 1.39854 1.66137 1.78150 1.81979 2.02176 2.16580 2.31642 2.85292 3.10538 3.23294 3.42370 3.56053 3.57064 3.61003 3.71743 3.79953 3.86057 4.05206 4.11407 4.14130 4.30100 4.38738 4.53097 4.54836 4.60006 4.61481 4.77302 4.79894 4.84643 4.92535 4.98313 5.20326 5.21961 5.42181 5.52041 5.62331 5.72244 5.98497 6.24229 6.37405 6.50432 6.72089 6.84369 7.04710 7.14405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.829 5.829 2 C 0.533 3.467 3 O -0.575 6.575 4 C 0.131 3.869 5 N -0.692 5.692 6 C 0.564 3.436 7 O -0.568 6.568 8 C -0.133 4.133 9 C -0.103 4.103 10 C -0.080 4.080 11 C -0.079 4.079 12 C 0.066 3.934 13 C -0.068 4.068 14 N -0.579 5.579 15 C 0.086 3.914 16 C -0.188 4.188 17 C -0.048 4.048 18 O -0.562 6.562 19 Si 0.766 3.234 20 C -0.118 4.118 21 C 0.081 3.919 22 H 0.086 0.914 23 O -0.570 6.570 24 C -0.131 4.131 25 H 0.416 0.584 26 H 0.410 0.590 27 H 0.425 0.575 28 H 0.162 0.838 29 H 0.146 0.854 30 H 0.124 0.876 31 H 0.433 0.567 32 H 0.201 0.799 33 H 0.087 0.913 34 H 0.391 0.609 35 H -0.291 1.291 36 H -0.289 1.289 37 H 0.057 0.943 38 H 0.095 0.905 39 H 0.400 0.600 40 H 0.133 0.867 41 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.851 -5.589 -2.783 10.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.392 5.392 2 C 0.315 3.685 3 O -0.453 6.453 4 C 0.041 3.959 5 N -0.349 5.349 6 C 0.353 3.647 7 O -0.447 6.447 8 C -0.137 4.137 9 C -0.122 4.122 10 C -0.098 4.098 11 C -0.085 4.085 12 C -0.040 4.040 13 C -0.089 4.089 14 N -0.182 5.182 15 C -0.043 4.043 16 C -0.196 4.196 17 C -0.157 4.157 18 O -0.371 6.371 19 Si 0.670 3.330 20 C -0.157 4.157 21 C 0.022 3.978 22 H 0.104 0.896 23 O -0.378 6.378 24 C -0.169 4.169 25 H 0.248 0.752 26 H 0.241 0.759 27 H 0.266 0.734 28 H 0.180 0.820 29 H 0.163 0.837 30 H 0.142 0.858 31 H 0.273 0.727 32 H 0.218 0.782 33 H 0.105 0.895 34 H 0.241 0.759 35 H -0.218 1.218 36 H -0.217 1.217 37 H 0.076 0.924 38 H 0.114 0.886 39 H 0.250 0.750 40 H 0.151 0.849 41 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -7.589 -4.522 -0.978 8.888 hybrid contribution 0.140 -0.676 -0.529 0.870 sum -7.448 -5.198 -1.508 9.207 Atomic orbital electron populations 1.43591 1.05974 1.14345 1.75294 1.20302 0.83694 0.89982 0.74498 1.90758 1.69303 1.34132 1.51108 1.21362 0.91945 0.86702 0.95923 1.45562 1.60018 1.23658 1.05678 1.18494 0.79150 0.84617 0.82394 1.90843 1.47810 1.34637 1.71418 1.19342 1.03660 0.97893 0.92792 1.20948 0.97298 0.92804 1.01168 1.20441 0.98652 0.99429 0.91281 1.19577 0.99511 0.94905 0.94459 1.18135 1.02570 0.98483 0.84862 1.20116 0.98055 0.97837 0.92933 1.41787 1.45433 1.24697 1.06316 1.22195 0.94544 0.87606 0.99966 1.19798 1.08877 0.98979 0.91905 1.24267 0.95609 0.84734 1.11046 1.86595 1.37096 1.20062 1.93382 0.94255 0.78964 0.85719 0.74034 1.23217 0.92767 1.02989 0.96689 1.23103 0.84993 0.95807 0.93923 0.89613 1.86495 1.44838 1.75906 1.30589 1.23936 0.96900 1.03983 0.92051 0.75245 0.75852 0.73355 0.82032 0.83663 0.85801 0.72664 0.78237 0.89461 0.75892 1.21755 1.21653 0.92400 0.88617 0.74966 0.84908 0.87496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 1.71 8.78 -173.53 -1.52 0.18 16 2 C 0.53 3.17 6.61 87.66 0.58 3.75 16 3 O -0.57 -8.97 16.21 -3.04 -0.05 -9.02 16 4 C 0.13 0.18 1.05 3.38 0.00 0.18 16 5 N -0.69 1.78 4.73 -427.02 -2.02 -0.24 16 6 C 0.56 2.85 7.41 86.71 0.64 3.50 16 7 O -0.57 -8.44 15.35 -4.02 -0.06 -8.50 16 8 C -0.13 -0.34 5.87 -20.08 -0.12 -0.45 16 9 C -0.10 0.32 9.46 22.28 0.21 0.53 16 10 C -0.08 0.06 10.03 22.20 0.22 0.28 16 11 C -0.08 -0.23 6.35 -20.14 -0.13 -0.36 16 12 C 0.07 0.22 7.26 38.96 0.28 0.50 16 13 C -0.07 -0.34 9.61 22.63 0.22 -0.12 16 14 N -0.58 0.86 6.07 -187.71 -1.14 -0.28 16 15 C 0.09 -0.20 10.43 83.09 0.87 0.67 16 16 C -0.19 -0.14 5.61 -18.65 -0.10 -0.24 16 17 C -0.05 0.12 3.05 71.23 0.22 0.34 16 18 O -0.56 -0.46 12.86 -148.98 -1.92 -2.38 16 19 Si 0.77 -3.89 30.79 68.60 2.11 -1.78 16 20 C -0.12 -0.90 6.14 31.12 0.19 -0.71 16 21 C 0.08 0.19 4.82 31.12 0.15 0.34 16 22 H 0.09 0.37 7.63 -2.39 -0.02 0.35 16 23 O -0.57 -1.17 13.67 -148.98 -2.04 -3.21 16 24 C -0.13 0.65 7.21 31.12 0.22 0.88 16 25 H 0.42 -3.57 8.47 -92.70 -0.79 -4.35 16 26 H 0.41 -1.19 8.93 -92.71 -0.83 -2.01 16 27 H 0.43 -4.54 6.71 -92.71 -0.62 -5.16 16 28 H 0.16 -1.86 6.37 -2.91 -0.02 -1.88 16 29 H 0.15 -0.65 8.06 -2.91 -0.02 -0.68 16 30 H 0.12 0.80 7.62 -2.91 -0.02 0.78 16 31 H 0.43 -2.94 8.96 -92.71 -0.83 -3.77 16 32 H 0.20 -1.64 6.30 -2.91 -0.02 -1.66 16 33 H 0.09 -0.51 7.96 -2.38 -0.02 -0.53 16 34 H 0.39 -2.80 8.74 -74.06 -0.65 -3.44 16 35 H -0.29 0.01 7.11 99.48 0.71 0.72 16 36 H -0.29 -0.19 7.04 99.48 0.70 0.52 16 37 H 0.06 0.86 7.63 -2.38 -0.02 0.84 16 38 H 0.10 0.78 8.14 -2.39 -0.02 0.76 16 39 H 0.40 -2.89 9.12 -74.05 -0.68 -3.56 16 40 H 0.13 -1.18 8.14 -2.39 -0.02 -1.20 16 41 H 0.11 -0.93 8.10 -2.38 -0.02 -0.95 16 Total: 0.00 -35.00 350.41 -6.35 -41.35 By element: Atomic # 1 Polarization: -22.06 SS G_CDS: -3.18 Total: -25.24 kcal Atomic # 6 Polarization: 5.63 SS G_CDS: 3.46 Total: 9.09 kcal Atomic # 7 Polarization: 4.36 SS G_CDS: -4.68 Total: -0.33 kcal Atomic # 8 Polarization: -19.04 SS G_CDS: -4.06 Total: -23.10 kcal Atomic # 14 Polarization: -3.89 SS G_CDS: 2.11 Total: -1.78 kcal Total: -35.00 -6.35 -41.35 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12335838.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.979 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.353 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.333 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds