Wall clock time and date at job start Sun Mar 7 2021 04:57:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.34849 * 125.90412 * 2 1 4 4 C 1.40948 * 107.46727 * 180.29896 * 3 2 1 5 5 C 1.50701 * 126.26666 * 179.77327 * 4 3 2 6 6 O 1.42898 * 109.46868 * 254.95579 * 5 4 3 7 7 Si 1.86302 * 109.46972 * 14.95499 * 5 4 3 8 8 C 1.34853 * 107.46481 * 359.73210 * 4 3 2 9 9 C 1.50704 * 125.89767 * 179.97438 * 8 4 3 10 10 N 1.36559 * 108.20101 * 0.02562 * 8 4 3 11 11 C 1.40236 * 125.66622 * 180.02562 * 10 8 4 12 12 C 1.38908 * 119.99163 * 269.99500 * 11 10 8 13 13 C 1.50698 * 119.88876 * 0.02562 * 12 11 10 14 14 C 1.38267 * 120.22535 * 180.02562 * 12 11 10 15 15 C 1.37967 * 120.21594 * 359.96701 * 14 12 11 16 16 C 1.39614 * 119.98974 * 0.02562 * 15 14 12 17 17 C 1.47857 * 120.11400 * 179.97438 * 16 15 14 18 18 O 1.21554 * 120.00073 * 180.02562 * 17 16 15 19 19 N 1.34773 * 120.00231 * 0.02562 * 17 16 15 20 20 C 1.46505 * 120.00368 * 174.97395 * 19 17 16 21 21 C 1.50697 * 112.84736 * 293.73381 * 20 19 17 22 22 N 1.34779 * 120.00060 * 323.91560 * 21 20 19 23 23 O 1.21278 * 120.00330 * 143.91464 * 21 20 19 24 24 C 1.53775 * 113.61499 * 162.42580 * 20 19 17 25 25 C 1.53787 * 87.08123 * 220.01959 * 24 20 19 26 26 H 1.08996 * 113.61176 * 270.88943 * 25 24 20 27 27 O 1.42896 * 113.69182 * 139.99393 * 25 24 20 28 28 C 1.53779 * 87.07900 * 25.43287 * 25 24 20 29 29 C 1.38584 * 119.99628 * 90.01745 * 11 10 8 30 30 H 1.09002 * 109.47115 * 270.15506 * 1 2 3 31 31 H 1.09003 * 109.46820 * 30.15095 * 1 2 3 32 32 H 1.08998 * 109.47799 * 150.14794 * 1 2 3 33 33 H 1.07992 * 126.26809 * 359.97438 * 3 2 1 34 34 H 1.09005 * 109.46985 * 134.95259 * 5 4 3 35 35 H 0.96699 * 114.00097 * 60.00343 * 6 5 4 36 36 H 1.48497 * 110.00124 * 58.68111 * 7 5 4 37 37 H 1.48506 * 109.99779 * 179.97438 * 7 5 4 38 38 H 1.08998 * 109.47285 * 270.02979 * 9 8 4 39 39 H 1.09003 * 109.46956 * 30.02541 * 9 8 4 40 40 H 1.08994 * 109.47180 * 150.02397 * 9 8 4 41 41 H 1.09010 * 109.46752 * 270.02151 * 13 12 11 42 42 H 1.09003 * 109.47475 * 30.01086 * 13 12 11 43 43 H 1.08998 * 109.47495 * 150.01778 * 13 12 11 44 44 H 1.08004 * 119.88692 * 179.97438 * 14 12 11 45 45 H 1.08006 * 120.00744 * 179.74719 * 15 14 12 46 46 H 0.97002 * 120.00030 * 354.97538 * 19 17 16 47 47 H 0.97003 * 120.00310 * 354.96915 * 22 21 20 48 48 H 0.97001 * 119.99864 * 174.97445 * 22 21 20 49 49 H 1.08995 * 113.61641 * 334.56587 * 24 20 19 50 50 H 1.08998 * 113.61223 * 105.47432 * 24 20 19 51 51 H 0.96696 * 114.00339 * 82.46468 * 27 25 24 52 52 H 1.08999 * 113.61743 * 220.02209 * 28 25 24 53 53 H 1.09001 * 113.69032 * 89.12669 * 28 25 24 54 54 H 1.08007 * 120.10579 * 359.97438 * 29 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0923 0.0000 4 6 3.6349 0.6465 -0.0070 5 6 4.8648 1.5173 -0.0144 6 8 5.4485 1.5062 -1.3187 7 14 4.3936 3.2614 0.4403 8 6 3.6120 -0.7018 -0.0050 9 6 4.8176 -1.6060 -0.0112 10 7 2.3077 -1.1063 0.0024 11 6 1.8642 -2.4367 0.0071 12 6 1.6384 -3.0975 -1.1937 13 6 1.8713 -2.3827 -2.4997 14 6 1.2006 -4.4091 -1.1947 15 6 0.9858 -5.0703 -0.0030 16 6 1.2101 -4.4148 1.2091 17 6 0.9803 -5.1206 2.4878 18 8 1.1758 -4.5477 3.5419 19 7 0.5540 -6.3991 2.4847 20 6 0.4317 -7.1337 3.7464 21 6 1.7611 -7.3767 4.4133 22 7 2.8535 -7.6305 3.6658 23 8 1.8480 -7.3438 5.6225 24 6 -0.4474 -8.3912 3.6444 25 6 -1.0108 -8.0135 5.0246 26 1 -0.4440 -8.4312 5.8567 27 8 -2.4182 -8.2280 5.1486 28 6 -0.6362 -6.5596 4.6924 29 6 1.6509 -3.0917 1.2096 30 1 -0.3633 0.0028 1.0277 31 1 -0.3633 0.8887 -0.5162 32 1 -0.3634 -0.8913 -0.5115 33 1 1.9671 2.1203 -0.0004 34 1 5.5849 1.1351 0.7093 35 1 4.8626 1.8341 -2.0146 36 1 3.7564 3.2822 1.7815 37 1 5.5980 4.1302 0.4372 38 1 5.1023 -1.8250 -1.0403 39 1 5.6453 -1.1115 0.4973 40 1 4.5774 -2.5354 0.5050 41 1 0.9527 -1.8846 -2.8101 42 1 2.6610 -1.6420 -2.3728 43 1 2.1686 -3.1040 -3.2608 44 1 1.0263 -4.9175 -2.1315 45 1 0.6399 -6.0935 -0.0077 46 1 0.3282 -6.8331 1.6471 47 1 2.7712 -7.7292 2.7044 48 1 3.7221 -7.7146 4.0894 49 1 -1.1856 -8.3441 2.8438 50 1 0.1200 -9.3218 3.6442 51 1 -2.6600 -9.1407 5.3575 52 1 -0.2210 -6.0115 5.5382 53 1 -1.4251 -6.0105 4.1784 54 1 1.8261 -2.5793 2.1441 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12335842.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:57:57 Heat of formation + Delta-G solvation = -48.613309 kcal Electronic energy + Delta-G solvation = -38887.030196 eV Core-core repulsion = 33984.996109 eV Total energy + Delta-G solvation = -4902.034087 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.59 seconds Orbital eigenvalues (eV) -42.96368 -42.44035 -40.86967 -39.53330 -39.02685 -37.67178 -36.55261 -35.05932 -34.78656 -33.80112 -33.63934 -33.57289 -30.64269 -30.16521 -28.80393 -27.30008 -27.12490 -26.39345 -24.71410 -24.10432 -23.68026 -22.88524 -21.94343 -20.93383 -20.55194 -20.33561 -19.36687 -18.77429 -18.42517 -17.81635 -17.52426 -17.43438 -17.25368 -16.76080 -16.65761 -16.22846 -16.05239 -15.99710 -15.82989 -15.41758 -15.34228 -15.05098 -14.92569 -14.80020 -14.70650 -14.57299 -14.28959 -14.14330 -14.00931 -13.83505 -13.60991 -13.49789 -13.41403 -13.36055 -13.17009 -13.15130 -13.01132 -12.82178 -12.69633 -12.65245 -12.45589 -12.14718 -11.88598 -11.79228 -11.61759 -11.22549 -11.03246 -10.86162 -10.45368 -10.36888 -10.17799 -9.94009 -9.70398 -8.82745 -4.96829 -0.47957 -0.04514 1.05120 1.18789 1.41827 1.50249 1.63924 1.69991 1.82829 1.88798 2.02235 2.23692 2.51280 3.05121 3.18160 3.30852 3.44441 3.55694 3.59029 3.66773 3.68676 3.71459 3.79303 3.87664 3.98390 4.06958 4.11010 4.15202 4.29064 4.37544 4.41525 4.51154 4.52895 4.54071 4.57738 4.62981 4.65562 4.67800 4.69458 4.72833 4.74291 4.79417 4.84243 4.92854 4.98977 5.02244 5.03878 5.10338 5.12089 5.14421 5.27360 5.37306 5.54807 5.65397 5.99734 6.15488 6.17058 6.27637 6.49060 6.81508 6.87834 6.93884 7.08196 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.018 3.982 3 C -0.197 4.197 4 C -0.206 4.206 5 C -0.035 4.035 6 O -0.557 6.557 7 Si 0.787 3.213 8 C 0.035 3.965 9 C -0.077 4.077 10 N -0.402 5.402 11 C 0.088 3.912 12 C -0.039 4.039 13 C -0.120 4.120 14 C -0.109 4.109 15 C -0.050 4.050 16 C -0.142 4.142 17 C 0.561 3.439 18 O -0.567 6.567 19 N -0.689 5.689 20 C 0.132 3.868 21 C 0.531 3.469 22 N -0.829 5.829 23 O -0.575 6.575 24 C -0.128 4.128 25 C 0.081 3.919 26 H 0.084 0.916 27 O -0.569 6.569 28 C -0.118 4.118 29 C -0.059 4.059 30 H 0.064 0.936 31 H 0.101 0.899 32 H 0.064 0.936 33 H 0.162 0.838 34 H 0.092 0.908 35 H 0.392 0.608 36 H -0.301 1.301 37 H -0.301 1.301 38 H 0.081 0.919 39 H 0.075 0.925 40 H 0.056 0.944 41 H 0.086 0.914 42 H 0.056 0.944 43 H 0.096 0.904 44 H 0.177 0.823 45 H 0.178 0.822 46 H 0.427 0.573 47 H 0.417 0.583 48 H 0.409 0.591 49 H 0.137 0.863 50 H 0.107 0.893 51 H 0.400 0.600 52 H 0.054 0.946 53 H 0.098 0.902 54 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.313 -7.614 -12.671 15.399 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.090 4.090 3 C -0.220 4.220 4 C -0.213 4.213 5 C -0.146 4.146 6 O -0.365 6.365 7 Si 0.695 3.305 8 C -0.075 4.075 9 C -0.135 4.135 10 N -0.077 5.077 11 C -0.001 4.001 12 C -0.040 4.040 13 C -0.177 4.177 14 C -0.127 4.127 15 C -0.068 4.068 16 C -0.146 4.146 17 C 0.349 3.651 18 O -0.446 6.446 19 N -0.346 5.346 20 C 0.041 3.959 21 C 0.313 3.687 22 N -0.393 5.393 23 O -0.453 6.453 24 C -0.166 4.166 25 C 0.021 3.979 26 H 0.102 0.898 27 O -0.377 6.377 28 C -0.157 4.157 29 C -0.079 4.079 30 H 0.083 0.917 31 H 0.120 0.880 32 H 0.083 0.917 33 H 0.180 0.820 34 H 0.109 0.891 35 H 0.242 0.758 36 H -0.229 1.229 37 H -0.229 1.229 38 H 0.099 0.901 39 H 0.094 0.906 40 H 0.075 0.925 41 H 0.104 0.896 42 H 0.075 0.925 43 H 0.115 0.885 44 H 0.194 0.806 45 H 0.195 0.805 46 H 0.269 0.731 47 H 0.248 0.752 48 H 0.241 0.759 49 H 0.155 0.845 50 H 0.125 0.875 51 H 0.251 0.749 52 H 0.073 0.927 53 H 0.116 0.884 54 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -3.801 -6.452 -10.411 12.824 hybrid contribution 0.850 -0.806 0.685 1.357 sum -2.951 -7.258 -9.726 12.489 Atomic orbital electron populations 1.20360 0.86702 1.04203 1.02680 1.20779 0.94369 0.84918 1.08942 1.20809 0.91488 0.98463 1.11255 1.19741 0.95313 0.92752 1.13460 1.24371 0.93356 1.08594 0.88255 1.86421 1.44213 1.88981 1.16836 0.93679 0.80273 0.74231 0.82324 1.20460 0.84457 0.94358 1.08199 1.20245 0.93107 0.97062 1.03051 1.41349 1.05280 1.03187 1.57856 1.17425 1.05288 0.84021 0.93344 1.20572 0.94169 0.95038 0.94238 1.20908 1.02898 1.00854 0.93009 1.21396 0.98607 0.92550 1.00150 1.21807 0.94058 1.01225 0.89740 1.19566 1.07346 0.94230 0.93426 1.18569 0.75910 0.81834 0.88756 1.90872 1.52161 1.67166 1.34380 1.45521 1.68142 1.11658 1.09277 1.21365 0.91568 0.96904 0.86044 1.20352 0.86630 0.74889 0.86785 1.43598 1.09759 1.73389 1.12543 1.90766 1.85972 1.52604 1.15987 1.23939 0.97868 0.94844 0.99965 1.23086 0.82490 0.95660 0.96654 0.89848 1.86490 1.21607 1.35865 1.93779 1.23226 0.96515 0.97193 0.98803 1.21167 0.95485 0.94160 0.97065 0.91713 0.88006 0.91658 0.82029 0.89088 0.75832 1.22880 1.22884 0.90079 0.90602 0.92531 0.89579 0.92478 0.88495 0.80554 0.80494 0.73101 0.75223 0.75914 0.84489 0.87476 0.74921 0.92729 0.88360 0.87528 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 0.07 10.09 71.23 0.72 0.79 16 2 C 0.02 0.07 6.86 41.04 0.28 0.35 16 3 C -0.20 -0.67 9.27 22.16 0.21 -0.47 16 4 C -0.21 -1.08 5.36 -19.98 -0.11 -1.19 16 5 C -0.03 -0.14 2.60 71.24 0.19 0.04 16 6 O -0.56 -1.82 12.88 -148.98 -1.92 -3.74 16 7 Si 0.79 1.96 30.81 68.60 2.11 4.08 16 8 C 0.04 0.21 6.32 41.05 0.26 0.47 16 9 C -0.08 -0.28 9.88 71.24 0.70 0.42 16 10 N -0.40 -1.77 1.85 -320.37 -0.59 -2.36 16 11 C 0.09 0.16 4.49 38.04 0.17 0.33 16 12 C -0.04 0.16 5.90 -19.70 -0.12 0.04 16 13 C -0.12 0.69 9.76 71.24 0.70 1.38 16 14 C -0.11 1.08 9.67 22.21 0.21 1.30 16 15 C -0.05 0.51 9.53 22.54 0.21 0.73 16 16 C -0.14 0.17 5.87 -20.10 -0.12 0.06 16 17 C 0.56 1.48 7.42 86.79 0.64 2.12 16 18 O -0.57 -8.08 15.39 -3.89 -0.06 -8.14 16 19 N -0.69 3.88 4.73 -426.76 -2.02 1.86 16 20 C 0.13 -0.07 1.05 3.38 0.00 -0.07 16 21 C 0.53 2.62 6.60 87.66 0.58 3.19 16 22 N -0.83 2.58 8.78 -173.54 -1.52 1.05 16 23 O -0.58 -8.73 16.21 -3.02 -0.05 -8.78 16 24 C -0.13 0.91 7.22 31.12 0.22 1.14 16 25 C 0.08 0.08 4.82 31.12 0.15 0.23 16 26 H 0.08 0.28 7.63 -2.39 -0.02 0.27 16 27 O -0.57 -0.33 13.67 -148.98 -2.04 -2.37 16 28 C -0.12 -0.73 6.16 31.12 0.19 -0.54 16 29 C -0.06 -0.25 9.51 22.65 0.22 -0.04 16 30 H 0.06 0.04 8.14 -2.39 -0.02 0.02 16 31 H 0.10 -0.48 8.14 -2.39 -0.02 -0.50 16 32 H 0.06 -0.10 7.83 -2.39 -0.02 -0.12 16 33 H 0.16 -0.21 6.59 -2.91 -0.02 -0.22 16 34 H 0.09 0.57 7.50 -2.38 -0.02 0.55 16 35 H 0.39 -1.80 8.70 -74.06 -0.64 -2.45 16 36 H -0.30 -2.82 7.11 99.48 0.71 -2.12 16 37 H -0.30 -2.71 7.11 99.48 0.71 -2.00 16 38 H 0.08 0.15 8.14 -2.39 -0.02 0.13 16 39 H 0.08 0.31 7.50 -2.39 -0.02 0.30 16 40 H 0.06 0.22 7.83 -2.39 -0.02 0.20 16 41 H 0.09 -0.56 8.14 -2.38 -0.02 -0.58 16 42 H 0.06 -0.06 6.98 -2.39 -0.02 -0.08 16 43 H 0.10 -0.94 8.08 -2.39 -0.02 -0.96 16 44 H 0.18 -2.91 8.06 -2.91 -0.02 -2.93 16 45 H 0.18 -3.42 6.41 -2.91 -0.02 -3.44 16 46 H 0.43 -6.44 6.75 -92.71 -0.63 -7.07 16 47 H 0.42 -4.27 8.47 -92.71 -0.79 -5.06 16 48 H 0.41 -1.39 8.93 -92.71 -0.83 -2.22 16 49 H 0.14 -1.62 8.14 -2.39 -0.02 -1.64 16 50 H 0.11 -1.14 8.10 -2.39 -0.02 -1.16 16 51 H 0.40 -3.42 9.12 -74.06 -0.68 -4.10 16 52 H 0.05 0.78 7.63 -2.39 -0.02 0.76 16 53 H 0.10 0.60 8.14 -2.39 -0.02 0.58 16 54 H 0.11 1.17 7.65 -2.91 -0.02 1.14 16 Total: 0.00 -37.54 445.54 -3.28 -40.83 By element: Atomic # 1 Polarization: -30.20 SS G_CDS: -2.51 Total: -32.71 kcal Atomic # 6 Polarization: 4.97 SS G_CDS: 5.32 Total: 10.28 kcal Atomic # 7 Polarization: 4.69 SS G_CDS: -4.14 Total: 0.55 kcal Atomic # 8 Polarization: -18.97 SS G_CDS: -4.06 Total: -23.03 kcal Atomic # 14 Polarization: 1.96 SS G_CDS: 2.11 Total: 4.08 kcal Total: -37.54 -3.28 -40.83 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12335842.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.786 kcal (2) G-P(sol) polarization free energy of solvation -37.543 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.284 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.827 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.59 seconds