Wall clock time and date at job start Sun Mar 7 2021 04:58:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.34849 * 125.90377 * 2 1 4 4 C 1.40940 * 107.46824 * 180.23389 * 3 2 1 5 5 C 1.50701 * 126.26346 * 179.75359 * 4 3 2 6 6 O 1.42907 * 109.47014 * 254.99734 * 5 4 3 7 7 Si 1.86296 * 109.47341 * 15.00328 * 5 4 3 8 8 C 1.34848 * 107.46646 * 359.75569 * 4 3 2 9 9 C 1.50703 * 125.89749 * 180.02562 * 8 4 3 10 10 N 1.36567 * 108.20364 * 359.97438 * 8 4 3 11 11 C 1.40222 * 125.67100 * 179.97438 * 10 8 4 12 12 C 1.38543 * 119.99858 * 114.99420 * 11 10 8 13 13 C 1.39497 * 119.78612 * 179.97438 * 12 11 10 14 14 C 1.47864 * 120.11376 * 180.02562 * 13 12 11 15 15 O 1.21550 * 119.99777 * 359.97438 * 14 13 12 16 16 N 1.34770 * 120.00028 * 179.97438 * 14 13 12 17 17 C 1.46504 * 119.99898 * 175.03378 * 16 14 13 18 18 C 1.50706 * 112.84847 * 67.41958 * 17 16 14 19 19 N 1.34781 * 119.99908 * 34.58009 * 18 17 16 20 20 O 1.21276 * 119.99867 * 214.58455 * 18 17 16 21 21 C 1.53775 * 113.61720 * 296.22336 * 17 16 14 22 22 C 1.53784 * 87.07916 * 270.88036 * 21 17 16 23 23 H 1.09000 * 113.61536 * 220.01455 * 22 21 17 24 24 O 1.42901 * 113.61175 * 89.11739 * 22 21 17 25 25 C 1.53773 * 87.08160 * 334.56786 * 22 21 17 26 26 C 1.39572 * 119.77491 * 0.02562 * 13 12 11 27 27 C 1.38021 * 119.98664 * 0.25158 * 26 13 12 28 28 C 1.38219 * 120.21168 * 359.46648 * 27 26 13 29 29 H 1.09003 * 109.47530 * 270.18211 * 1 2 3 30 30 H 1.09003 * 109.46881 * 30.18161 * 1 2 3 31 31 H 1.09005 * 109.47505 * 150.18049 * 1 2 3 32 32 H 1.08005 * 126.26393 * 359.95538 * 3 2 1 33 33 H 1.09003 * 109.46717 * 135.00248 * 5 4 3 34 34 H 0.96700 * 113.99180 * 60.00615 * 6 5 4 35 35 H 1.48499 * 109.99753 * 179.97438 * 7 5 4 36 36 H 1.48497 * 109.99669 * 301.31584 * 7 5 4 37 37 H 1.08993 * 109.47288 * 269.95693 * 9 8 4 38 38 H 1.09000 * 109.47236 * 29.96112 * 9 8 4 39 39 H 1.09003 * 109.46777 * 149.95585 * 9 8 4 40 40 H 1.08000 * 120.10612 * 359.97438 * 12 11 10 41 41 H 0.96999 * 120.00302 * 355.04224 * 16 14 13 42 42 H 0.96999 * 119.99630 * 355.00744 * 19 18 17 43 43 H 0.96995 * 120.00103 * 175.00826 * 19 18 17 44 44 H 1.08997 * 113.61526 * 25.42742 * 21 17 16 45 45 H 1.09007 * 113.61622 * 156.33691 * 21 17 16 46 46 H 0.96704 * 113.99659 * 179.97438 * 24 22 21 47 47 H 1.09001 * 113.61260 * 270.88211 * 25 22 21 48 48 H 1.08997 * 113.61558 * 139.98157 * 25 22 21 49 49 H 1.08002 * 120.00523 * 179.97438 * 26 13 12 50 50 H 1.08001 * 119.89170 * 179.74815 * 27 26 13 51 51 H 1.07998 * 119.88643 * 180.27445 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2977 1.0923 0.0000 4 6 3.6348 0.6466 -0.0055 5 6 4.8647 1.5175 -0.0127 6 8 5.4489 1.5059 -1.3168 7 14 4.3933 3.2617 0.4413 8 6 3.6120 -0.7017 -0.0032 9 6 4.8177 -1.6058 -0.0067 10 7 2.3077 -1.1063 0.0042 11 6 1.8642 -2.4366 0.0081 12 6 1.1699 -2.9321 1.0998 13 6 0.7304 -4.2560 1.0988 14 6 -0.0117 -4.7921 2.2599 15 8 -0.2393 -4.0791 3.2176 16 7 -0.4358 -6.0714 2.2563 17 6 -1.0746 -6.6347 3.4484 18 6 -2.4153 -6.0128 3.7430 19 7 -3.2158 -5.6257 2.7301 20 8 -2.7739 -5.8606 4.8915 21 6 -0.1450 -6.7028 4.6714 22 6 0.2773 -8.0955 4.1744 23 1 0.3986 -8.8262 4.9741 24 8 1.3850 -8.0696 3.2720 25 6 -1.0882 -8.1723 3.4715 26 6 0.9935 -5.0728 -0.0019 27 6 1.6910 -4.5712 -1.0821 28 6 2.1212 -3.2577 -1.0830 29 1 -0.3634 0.0033 1.0277 30 1 -0.3633 0.8884 -0.5167 31 1 -0.3634 -0.8916 -0.5110 32 1 1.9670 2.1204 -0.0007 33 1 5.5845 1.1355 0.7113 34 1 4.8632 1.8336 -2.0130 35 1 5.5977 4.1304 0.4383 36 1 3.3883 3.7826 -0.5199 37 1 5.1036 -1.8261 -1.0352 38 1 5.6447 -1.1107 0.5022 39 1 4.5768 -2.5347 0.5104 40 1 0.9697 -2.2954 1.9489 41 1 -0.3180 -6.6192 1.4645 42 1 -2.9002 -5.6802 1.8146 43 1 -4.1075 -5.2926 2.9168 44 1 0.6603 -5.9686 4.6492 45 1 -0.6761 -6.7214 5.6231 46 1 1.6555 -8.9426 2.9562 47 1 -1.8772 -8.5926 4.0952 48 1 -1.0445 -8.6243 2.4807 49 1 0.6553 -6.0985 -0.0065 50 1 1.8972 -5.2058 -1.9313 51 1 2.6627 -2.8693 -1.9330 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12335854.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:01 Heat of formation + Delta-G solvation = -41.146113 kcal Electronic energy + Delta-G solvation = -36620.633733 eV Core-core repulsion = 31874.461067 eV Total energy + Delta-G solvation = -4746.172666 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 386.172 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -42.92500 -42.36220 -40.70131 -39.42668 -39.04916 -37.82322 -36.19741 -34.87504 -34.61982 -33.77428 -33.64044 -32.24515 -30.44446 -30.16951 -27.34690 -27.21815 -26.95899 -25.13960 -24.68375 -23.69370 -22.49467 -22.01457 -21.09600 -20.47114 -20.40608 -19.19221 -18.88988 -18.03015 -17.96318 -17.60187 -17.40691 -17.32326 -17.08690 -16.60439 -16.19644 -16.00037 -15.96399 -15.80766 -15.49722 -15.13537 -15.11732 -15.05144 -14.83297 -14.70444 -14.32316 -14.13263 -14.06206 -13.88406 -13.62841 -13.46771 -13.40191 -13.28276 -13.25580 -13.21030 -12.92123 -12.71418 -12.53034 -12.39139 -12.15946 -11.94196 -11.71045 -11.44092 -11.17029 -11.04297 -10.79831 -10.56726 -10.37467 -10.29278 -10.07779 -9.54670 -8.86466 -4.85189 -0.44582 -0.04841 1.06867 1.32227 1.41160 1.57326 1.63044 1.70140 1.75214 1.88921 2.01052 2.42657 2.59600 3.01819 3.25429 3.38231 3.44479 3.56150 3.65391 3.66250 3.68102 3.87695 3.91016 3.95198 3.95862 4.08573 4.17660 4.29569 4.32370 4.39056 4.45842 4.58446 4.60594 4.61495 4.64305 4.70564 4.70914 4.73900 4.76784 4.82388 4.88376 4.97033 4.98804 5.00506 5.06631 5.14237 5.15968 5.24716 5.33167 5.54016 5.74700 5.95141 6.12090 6.24109 6.34326 6.44694 6.57795 6.93495 6.99623 7.17043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.015 3.985 3 C -0.200 4.200 4 C -0.202 4.202 5 C -0.043 4.043 6 O -0.549 6.549 7 Si 0.766 3.234 8 C 0.040 3.960 9 C -0.079 4.079 10 N -0.405 5.405 11 C 0.096 3.904 12 C -0.065 4.065 13 C -0.129 4.129 14 C 0.562 3.438 15 O -0.567 6.567 16 N -0.674 5.674 17 C 0.130 3.870 18 C 0.523 3.477 19 N -0.834 5.834 20 O -0.583 6.583 21 C -0.134 4.134 22 C 0.096 3.904 23 H 0.096 0.904 24 O -0.558 6.558 25 C -0.135 4.135 26 C -0.058 4.058 27 C -0.099 4.099 28 C -0.084 4.084 29 H 0.071 0.929 30 H 0.094 0.906 31 H 0.063 0.937 32 H 0.150 0.850 33 H 0.113 0.887 34 H 0.382 0.618 35 H -0.303 1.303 36 H -0.284 1.284 37 H 0.079 0.921 38 H 0.084 0.916 39 H 0.063 0.937 40 H 0.114 0.886 41 H 0.424 0.576 42 H 0.413 0.587 43 H 0.406 0.594 44 H 0.057 0.943 45 H 0.102 0.898 46 H 0.403 0.597 47 H 0.113 0.887 48 H 0.125 0.875 49 H 0.173 0.827 50 H 0.176 0.824 51 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.776 -10.291 -7.283 12.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.094 4.094 3 C -0.224 4.224 4 C -0.208 4.208 5 C -0.153 4.153 6 O -0.357 6.357 7 Si 0.672 3.328 8 C -0.069 4.069 9 C -0.137 4.137 10 N -0.080 5.080 11 C 0.007 3.993 12 C -0.085 4.085 13 C -0.133 4.133 14 C 0.350 3.650 15 O -0.446 6.446 16 N -0.330 5.330 17 C 0.039 3.961 18 C 0.307 3.693 19 N -0.397 5.397 20 O -0.462 6.462 21 C -0.173 4.173 22 C 0.036 3.964 23 H 0.113 0.887 24 O -0.366 6.366 25 C -0.173 4.173 26 C -0.076 4.076 27 C -0.117 4.117 28 C -0.103 4.103 29 H 0.090 0.910 30 H 0.113 0.887 31 H 0.082 0.918 32 H 0.167 0.833 33 H 0.130 0.870 34 H 0.231 0.769 35 H -0.231 1.231 36 H -0.211 1.211 37 H 0.098 0.902 38 H 0.103 0.897 39 H 0.081 0.919 40 H 0.132 0.868 41 H 0.265 0.735 42 H 0.243 0.757 43 H 0.237 0.763 44 H 0.076 0.924 45 H 0.120 0.880 46 H 0.254 0.746 47 H 0.132 0.868 48 H 0.143 0.857 49 H 0.190 0.810 50 H 0.194 0.806 51 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -1.684 -8.879 -5.643 10.654 hybrid contribution -0.250 -0.091 -1.495 1.518 sum -1.934 -8.970 -7.138 11.625 Atomic orbital electron populations 1.20354 0.86862 1.03789 1.02951 1.20740 0.94339 0.85080 1.09192 1.20795 0.92100 0.98188 1.11292 1.19669 0.94976 0.92840 1.13351 1.24388 0.94546 1.09198 0.87170 1.86533 1.44545 1.87241 1.17345 0.93817 0.77235 0.72254 0.89534 1.20576 0.84396 0.94389 1.07576 1.20320 0.92887 0.97282 1.03181 1.41519 1.05614 1.03325 1.57544 1.17639 1.02161 0.83730 0.95759 1.21097 0.95813 0.95116 0.96446 1.19623 1.03460 0.94321 0.95885 1.18485 0.78140 0.81883 0.86473 1.90861 1.57317 1.59198 1.37263 1.45182 1.60203 1.11717 1.15857 1.21469 0.89040 0.97017 0.88531 1.20905 0.86835 0.76678 0.84888 1.43681 1.18960 1.66908 1.10111 1.90737 1.76048 1.56610 1.22793 1.23338 0.98021 0.98314 0.97586 1.22519 0.85632 0.95942 0.92293 0.88656 1.86476 1.49037 1.36600 1.64525 1.23905 0.99676 0.88419 1.05344 1.21796 0.94694 1.00476 0.90678 1.21452 0.96439 0.94137 0.99699 1.21654 0.97942 0.94633 0.96081 0.91039 0.88748 0.91819 0.83251 0.86951 0.76911 1.23128 1.21062 0.90217 0.89747 0.91851 0.86812 0.73463 0.75680 0.76263 0.92409 0.87982 0.74613 0.86828 0.85666 0.80960 0.80626 0.84234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.11 9.94 71.23 0.71 0.59 16 2 C 0.01 0.08 6.81 41.04 0.28 0.36 16 3 C -0.20 -1.10 9.27 22.15 0.21 -0.89 16 4 C -0.20 -1.15 5.35 -19.98 -0.11 -1.25 16 5 C -0.04 -0.17 2.60 71.24 0.19 0.01 16 6 O -0.55 -3.20 12.88 -148.98 -1.92 -5.12 16 7 Si 0.77 2.13 30.86 68.60 2.12 4.25 16 8 C 0.04 0.23 6.81 41.04 0.28 0.51 16 9 C -0.08 -0.15 9.72 71.24 0.69 0.54 16 10 N -0.41 -2.13 2.79 -320.37 -0.89 -3.02 16 11 C 0.10 0.21 4.65 38.04 0.18 0.39 16 12 C -0.06 -0.26 9.28 22.65 0.21 -0.05 16 13 C -0.13 0.07 5.87 -20.10 -0.12 -0.04 16 14 C 0.56 1.82 7.25 86.79 0.63 2.45 16 15 O -0.57 -7.99 15.05 -3.87 -0.06 -8.04 16 16 N -0.67 3.08 3.98 -426.75 -1.70 1.38 16 17 C 0.13 -0.06 0.97 3.38 0.00 -0.06 16 18 C 0.52 3.01 6.61 87.66 0.58 3.59 16 19 N -0.83 1.36 8.83 -173.53 -1.53 -0.18 16 20 O -0.58 -9.23 16.76 -3.02 -0.05 -9.28 16 21 C -0.13 -0.56 6.67 31.12 0.21 -0.35 16 22 C 0.10 -0.51 5.28 31.12 0.16 -0.35 16 23 H 0.10 -0.75 8.14 -2.39 -0.02 -0.77 16 24 O -0.56 3.79 13.09 -148.98 -1.95 1.84 16 25 C -0.14 1.14 7.20 31.12 0.22 1.36 16 26 C -0.06 0.52 9.54 22.54 0.21 0.74 16 27 C -0.10 0.91 10.02 22.21 0.22 1.13 16 28 C -0.08 0.28 9.72 22.44 0.22 0.50 16 29 H 0.07 0.13 8.14 -2.39 -0.02 0.12 16 30 H 0.09 -0.13 8.14 -2.39 -0.02 -0.15 16 31 H 0.06 0.06 7.83 -2.38 -0.02 0.04 16 32 H 0.15 0.45 6.52 -2.91 -0.02 0.43 16 33 H 0.11 0.31 7.50 -2.39 -0.02 0.29 16 34 H 0.38 0.35 8.70 -74.06 -0.64 -0.30 16 35 H -0.30 -2.87 7.11 99.48 0.71 -2.16 16 36 H -0.28 -1.82 7.01 99.48 0.70 -1.12 16 37 H 0.08 0.03 8.14 -2.39 -0.02 0.01 16 38 H 0.08 0.12 7.50 -2.39 -0.02 0.11 16 39 H 0.06 0.09 7.83 -2.39 -0.02 0.07 16 40 H 0.11 1.09 7.65 -2.91 -0.02 1.06 16 41 H 0.42 -5.49 6.72 -92.71 -0.62 -6.12 16 42 H 0.41 -3.21 8.29 -92.71 -0.77 -3.98 16 43 H 0.41 -0.97 8.93 -92.71 -0.83 -1.80 16 44 H 0.06 0.60 7.37 -2.39 -0.02 0.59 16 45 H 0.10 0.74 7.34 -2.38 -0.02 0.72 16 46 H 0.40 -6.50 9.12 -74.05 -0.68 -7.18 16 47 H 0.11 -0.89 8.10 -2.39 -0.02 -0.91 16 48 H 0.13 -1.92 8.10 -2.39 -0.02 -1.94 16 49 H 0.17 -2.96 6.41 -2.91 -0.02 -2.98 16 50 H 0.18 -2.76 8.06 -2.91 -0.02 -2.78 16 51 H 0.14 -0.61 8.06 -2.91 -0.02 -0.64 16 Total: 0.00 -34.90 424.51 -3.47 -38.38 By element: Atomic # 1 Polarization: -26.92 SS G_CDS: -2.47 Total: -29.38 kcal Atomic # 6 Polarization: 4.20 SS G_CDS: 4.98 Total: 9.17 kcal Atomic # 7 Polarization: 2.31 SS G_CDS: -4.12 Total: -1.81 kcal Atomic # 8 Polarization: -16.63 SS G_CDS: -3.98 Total: -20.60 kcal Atomic # 14 Polarization: 2.13 SS G_CDS: 2.12 Total: 4.25 kcal Total: -34.90 -3.47 -38.38 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12335854.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.769 kcal (2) G-P(sol) polarization free energy of solvation -34.904 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.674 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.377 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.146 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds