Wall clock time and date at job start Sun Mar 7 2021 04:58:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.34850 * 125.90135 * 2 1 4 4 C 1.40942 * 107.47056 * 180.02562 * 3 2 1 5 5 C 1.50697 * 126.26722 * 180.02562 * 4 3 2 6 6 O 1.42905 * 109.47166 * 255.02925 * 5 4 3 7 7 Si 1.86301 * 109.47130 * 15.02510 * 5 4 3 8 8 C 1.34854 * 107.46462 * 359.75846 * 4 3 2 9 9 C 1.50700 * 125.89551 * 180.23117 * 8 4 3 10 10 N 1.36567 * 125.89976 * 180.02562 * 2 1 3 11 11 C 1.40203 * 125.66936 * 359.96647 * 10 2 1 12 12 C 1.38816 * 120.06763 * 65.01658 * 11 10 2 13 13 C 1.38122 * 119.93527 * 180.02562 * 12 11 10 14 14 C 1.38284 * 120.06215 * 0.02562 * 13 12 11 15 15 C 1.50702 * 119.93127 * 179.97438 * 14 13 12 16 16 C 1.50696 * 109.47482 * 90.00086 * 15 14 13 17 17 O 1.21286 * 119.99743 * 0.02562 * 16 15 14 18 18 N 1.34775 * 120.00156 * 179.97438 * 16 15 14 19 19 C 1.46504 * 119.99668 * 175.00041 * 18 16 15 20 20 C 1.50697 * 112.84964 * 298.27783 * 19 18 16 21 21 N 1.34776 * 120.00348 * 325.54442 * 20 19 18 22 22 O 1.21286 * 120.00030 * 145.54497 * 20 19 18 23 23 C 1.53779 * 113.61154 * 167.08581 * 19 18 16 24 24 C 1.53783 * 87.08116 * 270.79885 * 23 19 18 25 25 H 1.09000 * 113.61281 * 220.01909 * 24 23 19 26 26 O 1.42901 * 113.61579 * 89.11475 * 24 23 19 27 27 C 1.53780 * 113.61572 * 69.47724 * 19 18 16 28 28 C 1.38274 * 120.13287 * 0.23325 * 14 13 12 29 29 C 1.38124 * 120.06431 * 359.49753 * 28 14 13 30 30 H 1.09000 * 109.46956 * 269.97872 * 1 2 3 31 31 H 1.08996 * 109.47045 * 29.97075 * 1 2 3 32 32 H 1.08997 * 109.47090 * 149.97971 * 1 2 3 33 33 H 1.08003 * 126.26187 * 0.05768 * 3 2 1 34 34 H 1.08994 * 109.47520 * 135.02497 * 5 4 3 35 35 H 0.96698 * 113.99970 * 180.02562 * 6 5 4 36 36 H 1.48500 * 110.00168 * 300.00123 * 7 5 4 37 37 H 1.48504 * 109.99996 * 61.32004 * 7 5 4 38 38 H 1.09004 * 109.47094 * 270.18199 * 9 8 4 39 39 H 1.08998 * 109.47467 * 30.18484 * 9 8 4 40 40 H 1.09000 * 109.46709 * 150.18590 * 9 8 4 41 41 H 1.08001 * 120.03486 * 0.02562 * 12 11 10 42 42 H 1.07998 * 119.97202 * 180.02562 * 13 12 11 43 43 H 1.09002 * 109.47007 * 329.99832 * 15 14 13 44 44 H 1.09008 * 109.46876 * 210.00335 * 15 14 13 45 45 H 0.96993 * 119.99974 * 355.00086 * 18 16 15 46 46 H 0.96998 * 120.00286 * 175.07702 * 21 20 19 47 47 H 0.96999 * 119.99783 * 354.80446 * 21 20 19 48 48 H 1.09002 * 113.61697 * 25.34673 * 23 19 18 49 49 H 1.08996 * 113.61791 * 156.25336 * 23 19 18 50 50 H 0.96694 * 114.00112 * 179.97438 * 26 24 23 51 51 H 1.08996 * 113.61476 * 203.74544 * 27 19 18 52 52 H 1.09003 * 113.61464 * 334.65087 * 27 19 18 53 53 H 1.07999 * 119.96932 * 179.74109 * 28 14 13 54 54 H 1.08000 * 120.03536 * 180.25629 * 29 28 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2978 1.0923 0.0000 4 6 3.6349 0.6467 -0.0006 5 6 4.8648 1.5176 -0.0003 6 8 5.4544 1.5097 -1.3020 7 14 4.3913 3.2606 0.4564 8 6 3.6122 -0.7016 0.0045 9 6 4.8179 -1.6056 0.0107 10 7 2.3078 -1.1062 -0.0005 11 6 1.8645 -2.4364 -0.0004 12 6 1.1627 -2.9357 -1.0891 13 6 0.7269 -4.2463 -1.0859 14 6 0.9885 -5.0607 0.0006 15 6 0.5111 -6.4901 0.0012 16 6 1.5733 -7.3748 -0.5987 17 8 2.6157 -6.8922 -0.9879 18 7 1.3654 -8.7024 -0.7017 19 6 2.3494 -9.5472 -1.3831 20 6 2.5300 -9.1815 -2.8338 21 7 1.4792 -8.7408 -3.5536 22 8 3.6209 -9.2839 -3.3538 23 6 2.1365 -11.0521 -1.1491 24 6 3.0403 -10.9078 0.0868 25 1 3.7287 -11.7417 0.2240 26 8 2.3293 -10.5713 1.2798 27 6 3.6737 -9.6926 -0.6150 28 6 1.6827 -4.5646 1.0887 29 6 2.1259 -3.2564 1.0889 30 1 -0.3633 -0.0004 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3633 -0.8898 -0.5141 33 1 1.9669 2.1204 0.0009 34 1 5.5816 1.1338 0.7256 35 1 6.2527 2.0504 -1.3754 36 1 3.4143 3.7954 -0.5257 37 1 3.8061 3.2870 1.8210 38 1 5.1130 -1.8249 -1.0154 39 1 5.6403 -1.1109 0.5275 40 1 4.5724 -2.5350 0.5247 41 1 0.9577 -2.2999 -1.9378 42 1 0.1812 -4.6355 -1.9327 43 1 -0.4024 -6.5682 -0.5883 44 1 0.3108 -6.8058 1.0252 45 1 0.5643 -9.0985 -0.3246 46 1 1.6090 -8.4379 -4.4659 47 1 0.5924 -8.7302 -3.1606 48 1 1.1065 -11.3152 -0.9083 49 1 2.5632 -11.6803 -1.9310 50 1 2.8924 -10.4795 2.0605 51 1 4.5213 -9.9483 -1.2507 52 1 3.8828 -8.8596 0.0563 53 1 1.8819 -5.2018 1.9377 54 1 2.6716 -2.8706 1.9373 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12335864.mol2 54 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:05 Heat of formation + Delta-G solvation = -48.925900 kcal Electronic energy + Delta-G solvation = -38343.623572 eV Core-core repulsion = 33441.575930 eV Total energy + Delta-G solvation = -4902.047642 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.188 amu Computer time = 1.97 seconds Orbital eigenvalues (eV) -42.99659 -42.26367 -40.65735 -39.60846 -39.12086 -37.67528 -36.10826 -35.02967 -34.79340 -33.89376 -33.83324 -32.16955 -32.07726 -30.29254 -28.77043 -27.20895 -27.03935 -26.44714 -24.67702 -24.04631 -23.33467 -22.42358 -21.66131 -21.10503 -20.39531 -20.10084 -19.12537 -18.36279 -18.31419 -18.06672 -18.04855 -17.87699 -17.20037 -16.99851 -16.49484 -16.05401 -15.99980 -15.71825 -15.68150 -15.52111 -15.39494 -15.22584 -15.19520 -14.72530 -14.70913 -14.59916 -14.29674 -14.25752 -13.87182 -13.84814 -13.72231 -13.58877 -13.53612 -13.26788 -13.24928 -13.13772 -12.88690 -12.86062 -12.58941 -12.48249 -12.43832 -12.13456 -11.94141 -11.71388 -11.46149 -11.12858 -10.86868 -10.76054 -10.30453 -10.15295 -10.13804 -10.08309 -9.51305 -9.00539 -4.95326 -0.13705 0.20149 0.96665 1.35562 1.37174 1.52921 1.55794 1.69349 1.72529 1.93748 2.07836 2.46910 2.53918 2.99629 3.29702 3.46732 3.52349 3.60648 3.65945 3.68610 3.71732 3.76579 3.82096 3.86994 4.01969 4.07165 4.10072 4.19917 4.21239 4.29017 4.36052 4.40476 4.46123 4.50545 4.52579 4.54930 4.59254 4.59549 4.67114 4.68944 4.80911 4.84881 4.86776 4.87489 4.89561 4.90454 4.94793 5.08420 5.15530 5.22009 5.35051 5.37933 5.67203 5.73914 5.78632 5.99415 6.29172 6.37675 6.48935 6.80264 6.99641 7.16987 7.22372 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.022 3.978 3 C -0.221 4.221 4 C -0.179 4.179 5 C -0.044 4.044 6 O -0.568 6.568 7 Si 0.792 3.208 8 C 0.038 3.962 9 C -0.078 4.078 10 N -0.402 5.402 11 C 0.098 3.902 12 C -0.120 4.120 13 C -0.092 4.092 14 C -0.058 4.058 15 C -0.095 4.095 16 C 0.515 3.485 17 O -0.568 6.568 18 N -0.683 5.683 19 C 0.133 3.867 20 C 0.523 3.477 21 N -0.834 5.834 22 O -0.587 6.587 23 C -0.109 4.109 24 C 0.095 3.905 25 H 0.092 0.908 26 O -0.553 6.553 27 C -0.162 4.162 28 C -0.093 4.093 29 C -0.118 4.118 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.073 0.927 33 H 0.133 0.867 34 H 0.081 0.919 35 H 0.398 0.602 36 H -0.303 1.303 37 H -0.298 1.298 38 H 0.065 0.935 39 H 0.095 0.905 40 H 0.065 0.935 41 H 0.124 0.876 42 H 0.151 0.849 43 H 0.142 0.858 44 H 0.138 0.862 45 H 0.426 0.574 46 H 0.404 0.596 47 H 0.415 0.585 48 H 0.116 0.884 49 H 0.115 0.885 50 H 0.399 0.601 51 H 0.088 0.912 52 H 0.066 0.934 53 H 0.150 0.850 54 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.958 -5.844 4.726 9.591 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.087 4.087 3 C -0.245 4.245 4 C -0.185 4.185 5 C -0.154 4.154 6 O -0.377 6.377 7 Si 0.699 3.301 8 C -0.072 4.072 9 C -0.135 4.135 10 N -0.077 5.077 11 C 0.009 3.991 12 C -0.139 4.139 13 C -0.111 4.111 14 C -0.059 4.059 15 C -0.135 4.135 16 C 0.303 3.697 17 O -0.445 6.445 18 N -0.340 5.340 19 C 0.042 3.958 20 C 0.307 3.693 21 N -0.397 5.397 22 O -0.466 6.466 23 C -0.147 4.147 24 C 0.035 3.965 25 H 0.110 0.890 26 O -0.361 6.361 27 C -0.201 4.201 28 C -0.111 4.111 29 C -0.137 4.137 30 H 0.099 0.901 31 H 0.108 0.892 32 H 0.092 0.908 33 H 0.150 0.850 34 H 0.099 0.901 35 H 0.248 0.752 36 H -0.231 1.231 37 H -0.226 1.226 38 H 0.084 0.916 39 H 0.113 0.887 40 H 0.084 0.916 41 H 0.142 0.858 42 H 0.168 0.832 43 H 0.160 0.840 44 H 0.155 0.845 45 H 0.265 0.735 46 H 0.235 0.765 47 H 0.246 0.754 48 H 0.135 0.865 49 H 0.134 0.866 50 H 0.249 0.751 51 H 0.107 0.893 52 H 0.085 0.915 53 H 0.167 0.833 54 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -6.238 -5.811 3.975 9.407 hybrid contribution -0.065 0.059 -0.016 0.089 sum -6.303 -5.753 3.959 9.407 Atomic orbital electron populations 1.20416 0.85934 1.04084 1.03552 1.20804 0.94834 0.84720 1.08383 1.20654 0.92949 0.97652 1.13271 1.18992 0.94217 0.92420 1.12831 1.24181 0.93932 1.08949 0.88348 1.86487 1.47143 1.74381 1.29709 0.94890 0.84516 0.75712 0.74996 1.20607 0.84883 0.94120 1.07569 1.20318 0.93063 0.97368 1.02736 1.41548 1.05407 1.03766 1.56932 1.17873 1.01961 0.82798 0.96469 1.21196 0.99099 0.96918 0.96654 1.21154 0.99285 0.92060 0.98574 1.19654 0.97135 0.95383 0.93720 1.20786 0.97986 0.88503 1.06181 1.21098 0.88222 0.82541 0.77863 1.90826 1.29135 1.75093 1.49473 1.45421 1.24322 1.05991 1.58230 1.21345 0.93137 0.94015 0.87350 1.20946 0.83824 0.75235 0.89272 1.43688 1.11147 1.66656 1.18198 1.90737 1.27611 1.55084 1.73119 1.23314 1.03872 0.90244 0.97243 1.22586 0.93451 0.94950 0.85493 0.89023 1.86335 1.38322 1.92721 1.18709 1.23914 0.96258 1.00506 0.99466 1.21167 0.96386 0.94199 0.99363 1.21212 1.00866 0.94756 0.96857 0.90123 0.89187 0.90804 0.84982 0.90104 0.75157 1.23099 1.22557 0.91578 0.88656 0.91608 0.85834 0.83180 0.83997 0.84456 0.73453 0.76473 0.75417 0.86526 0.86637 0.75099 0.89348 0.91514 0.83251 0.85504 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.33 10.08 71.24 0.72 0.39 16 2 C 0.02 0.24 6.81 41.04 0.28 0.52 16 3 C -0.22 -2.95 9.27 22.15 0.21 -2.75 16 4 C -0.18 -2.28 5.39 -19.98 -0.11 -2.39 16 5 C -0.04 -0.28 2.60 71.24 0.19 -0.09 16 6 O -0.57 -3.56 12.86 -148.98 -1.92 -5.48 16 7 Si 0.79 2.96 30.84 68.60 2.12 5.07 16 8 C 0.04 0.47 6.81 41.04 0.28 0.75 16 9 C -0.08 -0.62 9.87 71.24 0.70 0.08 16 10 N -0.40 -4.44 2.79 -320.26 -0.89 -5.34 16 11 C 0.10 0.74 5.02 38.08 0.19 0.93 16 12 C -0.12 -0.61 8.78 22.38 0.20 -0.41 16 13 C -0.09 -0.03 9.69 22.25 0.22 0.18 16 14 C -0.06 0.09 4.38 -19.84 -0.09 0.00 16 15 C -0.10 0.85 5.83 29.10 0.17 1.02 16 16 C 0.51 -1.02 7.38 87.66 0.65 -0.37 16 17 O -0.57 -5.52 14.75 -3.05 -0.04 -5.57 16 18 N -0.68 4.58 4.17 -423.93 -1.77 2.82 16 19 C 0.13 -0.14 0.95 3.38 0.00 -0.13 16 20 C 0.52 2.86 6.48 87.66 0.57 3.42 16 21 N -0.83 1.87 8.78 -173.53 -1.52 0.34 16 22 O -0.59 -9.44 16.76 -3.05 -0.05 -9.49 16 23 C -0.11 0.68 7.18 31.12 0.22 0.90 16 24 C 0.09 -0.48 5.28 31.18 0.16 -0.32 16 25 H 0.09 -0.66 8.14 -2.39 -0.02 -0.68 16 26 O -0.55 3.83 13.09 -148.98 -1.95 1.88 16 27 C -0.16 -0.38 6.71 31.18 0.21 -0.17 16 28 C -0.09 -0.04 9.69 22.25 0.22 0.18 16 29 C -0.12 -0.55 8.76 22.38 0.20 -0.35 16 30 H 0.08 0.17 8.14 -2.39 -0.02 0.16 16 31 H 0.09 0.17 8.14 -2.39 -0.02 0.15 16 32 H 0.07 0.17 6.85 -2.39 -0.02 0.16 16 33 H 0.13 1.66 6.55 -2.91 -0.02 1.64 16 34 H 0.08 0.17 7.49 -2.39 -0.02 0.16 16 35 H 0.40 -2.03 8.74 -74.06 -0.65 -2.68 16 36 H -0.30 -3.44 7.06 99.48 0.70 -2.74 16 37 H -0.30 -2.90 7.11 99.48 0.71 -2.19 16 38 H 0.07 0.64 8.14 -2.39 -0.02 0.62 16 39 H 0.09 0.42 7.50 -2.39 -0.02 0.41 16 40 H 0.07 0.47 6.83 -2.39 -0.02 0.45 16 41 H 0.12 0.65 8.06 -2.91 -0.02 0.63 16 42 H 0.15 -0.69 8.06 -2.91 -0.02 -0.71 16 43 H 0.14 -2.19 8.08 -2.39 -0.02 -2.21 16 44 H 0.14 -1.92 8.08 -2.38 -0.02 -1.93 16 45 H 0.43 -5.66 8.64 -92.71 -0.80 -6.46 16 46 H 0.40 -0.90 8.93 -92.71 -0.83 -1.73 16 47 H 0.41 -3.88 8.43 -92.71 -0.78 -4.66 16 48 H 0.12 -1.25 8.09 -2.39 -0.02 -1.27 16 49 H 0.12 -0.68 8.09 -2.39 -0.02 -0.69 16 50 H 0.40 -4.95 9.12 -74.06 -0.68 -5.62 16 51 H 0.09 0.61 7.34 -2.39 -0.02 0.59 16 52 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 53 H 0.15 -0.62 8.06 -2.91 -0.02 -0.64 16 54 H 0.13 0.53 8.06 -2.91 -0.02 0.50 16 Total: 0.00 -39.19 446.28 -3.55 -42.74 By element: Atomic # 1 Polarization: -25.68 SS G_CDS: -2.70 Total: -28.38 kcal Atomic # 6 Polarization: -3.78 SS G_CDS: 5.18 Total: 1.39 kcal Atomic # 7 Polarization: 2.01 SS G_CDS: -4.19 Total: -2.18 kcal Atomic # 8 Polarization: -14.69 SS G_CDS: -3.96 Total: -18.65 kcal Atomic # 14 Polarization: 2.96 SS G_CDS: 2.12 Total: 5.07 kcal Total: -39.19 -3.55 -42.74 kcal The number of atoms in the molecule is 54 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12335864.mol2 54 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.184 kcal (2) G-P(sol) polarization free energy of solvation -39.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.375 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.742 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.98 seconds