Wall clock time and date at job start Sun Mar 7 2021 04:58:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 C 1.52993 * 109.47254 * 291.94954 * 3 2 1 5 5 C 1.53008 * 109.47097 * 171.95259 * 3 2 1 6 6 C 1.50703 * 109.47069 * 303.35546 * 5 3 2 7 7 O 1.21284 * 120.00219 * 114.06000 * 6 5 3 8 8 N 1.34773 * 119.99898 * 294.06253 * 6 5 3 9 9 C 1.46498 * 120.00205 * 185.27426 * 8 6 5 10 10 C 1.50701 * 112.85237 * 297.07048 * 9 8 6 11 11 N 1.34775 * 119.99887 * 325.36823 * 10 9 8 12 12 O 1.21276 * 119.99936 * 145.35457 * 10 9 8 13 13 C 1.53780 * 113.61532 * 165.87196 * 9 8 6 14 14 C 1.53779 * 87.08290 * 270.88516 * 13 9 8 15 15 H 1.09000 * 113.61350 * 220.01252 * 14 13 9 16 16 O 1.42902 * 113.61064 * 89.11781 * 14 13 9 17 17 C 1.53784 * 113.61178 * 68.26674 * 9 8 6 18 18 N 1.46504 * 109.46983 * 63.34919 * 5 3 2 19 19 C 1.36340 * 125.63768 * 290.81505 * 18 5 3 20 20 C 1.34853 * 108.21301 * 180.02562 * 19 18 5 21 21 C 1.40885 * 107.42038 * 359.97438 * 20 19 18 22 22 C 1.34846 * 107.41635 * 359.73670 * 21 20 19 23 23 C 1.50709 * 125.89136 * 180.25057 * 22 21 20 24 24 O 1.42897 * 109.47119 * 210.20243 * 23 22 21 25 25 Si 1.86302 * 109.46830 * 330.20337 * 23 22 21 26 26 H 1.08994 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47046 * 299.99581 * 1 2 3 28 28 H 1.08997 * 109.47067 * 59.99760 * 1 2 3 29 29 H 1.09006 * 109.47046 * 240.00419 * 2 1 3 30 30 H 1.08999 * 109.47581 * 120.00232 * 2 1 3 31 31 H 1.08994 * 109.46838 * 51.95268 * 3 2 1 32 32 H 1.09000 * 109.47742 * 295.51269 * 4 3 2 33 33 H 1.09006 * 109.46856 * 55.51285 * 4 3 2 34 34 H 1.08997 * 109.47330 * 175.51107 * 4 3 2 35 35 H 1.08989 * 109.46972 * 183.35264 * 5 3 2 36 36 H 0.97009 * 120.00080 * 5.27276 * 8 6 5 37 37 H 0.97001 * 120.00232 * 4.92662 * 11 10 9 38 38 H 0.96998 * 119.99728 * 184.93597 * 11 10 9 39 39 H 1.09002 * 113.61706 * 25.44061 * 13 9 8 40 40 H 1.09006 * 113.61222 * 156.25030 * 13 9 8 41 41 H 0.96706 * 113.99930 * 179.97438 * 16 14 13 42 42 H 1.09001 * 113.61426 * 203.66495 * 17 9 8 43 43 H 1.08999 * 113.61557 * 334.57147 * 17 9 8 44 44 H 1.07991 * 125.89130 * 0.02562 * 19 18 5 45 45 H 1.08002 * 126.28467 * 180.02562 * 20 19 18 46 46 H 1.08006 * 126.29445 * 179.97438 * 21 20 19 47 47 H 1.09000 * 109.46984 * 90.20327 * 23 22 21 48 48 H 0.96710 * 113.99889 * 60.00231 * 24 23 22 49 49 H 1.48494 * 110.00197 * 58.68363 * 25 23 22 50 50 H 1.48503 * 109.99719 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7017 2.1031 -1.3379 5 6 3.5567 1.4472 0.2019 6 6 3.8955 0.7238 1.4798 7 8 4.5152 -0.3181 1.4409 8 7 3.5100 1.2346 2.6659 9 6 3.9372 0.5948 3.9127 10 6 3.4138 -0.8108 4.0585 11 7 2.1943 -1.1287 3.5809 12 8 4.0901 -1.6560 4.6053 13 6 3.7161 1.4669 5.1598 14 6 5.1207 2.0412 4.9107 15 1 5.6988 2.1919 5.8225 16 8 5.1280 3.1837 4.0524 17 6 5.4455 0.7219 4.1848 18 7 4.2017 0.7722 -0.9270 19 6 4.1346 -0.5622 -1.1984 20 6 4.8535 -0.8022 -2.3138 21 6 5.3833 0.4292 -2.7472 22 6 4.9632 1.3757 -1.8835 23 6 5.2842 2.8463 -1.9595 24 8 5.3109 3.3968 -0.6411 25 14 6.9490 3.0778 -2.7630 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.5640 1.9961 0.8093 32 1 2.2412 1.5982 -2.1392 33 1 0.6293 2.0288 -1.5188 34 1 1.9933 3.1529 -1.3088 35 1 3.9120 2.4758 0.2615 36 1 2.9495 2.0259 2.6941 37 1 1.6832 -0.4732 3.0808 38 1 1.8275 -2.0129 3.7373 39 1 2.9177 2.2000 5.0441 40 1 3.6344 0.8946 6.0839 41 1 6.0087 3.5497 3.8922 42 1 5.8372 -0.0536 4.8430 43 1 6.0424 0.8539 3.2824 44 1 3.5983 -1.2997 -0.6199 45 1 4.9961 -1.7619 -2.7882 46 1 6.0077 0.5869 -3.6143 47 1 4.5218 3.3545 -2.5500 48 1 5.9678 2.9911 -0.0587 49 1 6.9439 2.4813 -4.1229 50 1 7.2774 4.5238 -2.8434 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14243910_12360566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:14 Heat of formation + Delta-G solvation = -61.136029 kcal Electronic energy + Delta-G solvation = -35350.446501 eV Core-core repulsion = 30960.773950 eV Total energy + Delta-G solvation = -4389.672551 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.93517 -42.05318 -39.96390 -39.18451 -37.88146 -37.68191 -36.22116 -34.74572 -33.92813 -33.22638 -31.11795 -30.44074 -28.58066 -27.15956 -26.65372 -26.09301 -24.92766 -22.79427 -22.25100 -21.68423 -21.26122 -20.40148 -20.30722 -19.15151 -18.88683 -18.16417 -18.01413 -17.92378 -16.98358 -16.77408 -16.70249 -16.27008 -16.15309 -15.80146 -15.67023 -15.46452 -15.27452 -14.97656 -14.75480 -14.55468 -14.42230 -14.17102 -13.92272 -13.84019 -13.67286 -13.46799 -13.37311 -13.20435 -13.18999 -13.07043 -12.69089 -12.55677 -12.18932 -12.00191 -11.89155 -11.88210 -11.86072 -11.65613 -11.38634 -11.14294 -10.95594 -10.68126 -10.58166 -10.12296 -9.41800 -8.74161 -4.96917 1.04153 1.33200 1.39554 1.51735 1.62698 1.73551 1.94910 2.22291 2.30711 2.45055 2.78583 3.13569 3.17808 3.25968 3.36002 3.47729 3.53174 3.58794 3.73141 3.77703 3.88359 4.15614 4.17120 4.22828 4.31076 4.37964 4.41419 4.42792 4.45886 4.48542 4.53624 4.65888 4.72217 4.75167 4.78237 4.85698 4.87603 4.90954 4.92381 4.96743 5.18311 5.22127 5.25225 5.47309 5.53104 5.75853 6.11676 6.12502 6.29188 6.31702 6.44528 6.46551 6.52638 6.95658 7.23601 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.136 4.136 3 C -0.095 4.095 4 C -0.148 4.148 5 C 0.102 3.898 6 C 0.509 3.491 7 O -0.504 6.504 8 N -0.698 5.698 9 C 0.134 3.866 10 C 0.535 3.465 11 N -0.849 5.849 12 O -0.530 6.530 13 C -0.119 4.119 14 C 0.083 3.917 15 H 0.081 0.919 16 O -0.548 6.548 17 C -0.151 4.151 18 N -0.411 5.411 19 C 0.028 3.972 20 C -0.207 4.207 21 C -0.188 4.188 22 C -0.023 4.023 23 C -0.042 4.042 24 O -0.544 6.544 25 Si 0.715 3.285 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.061 0.939 31 H 0.088 0.912 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.155 0.845 36 H 0.409 0.591 37 H 0.397 0.603 38 H 0.402 0.598 39 H 0.093 0.907 40 H 0.116 0.884 41 H 0.386 0.614 42 H 0.113 0.887 43 H 0.084 0.916 44 H 0.159 0.841 45 H 0.135 0.865 46 H 0.136 0.864 47 H 0.115 0.885 48 H 0.379 0.621 49 H -0.253 1.253 50 H -0.255 1.255 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.431 4.694 2.137 5.702 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.173 4.173 3 C -0.114 4.114 4 C -0.206 4.206 5 C -0.004 4.004 6 C 0.293 3.707 7 O -0.377 6.377 8 N -0.354 5.354 9 C 0.043 3.957 10 C 0.317 3.683 11 N -0.412 5.412 12 O -0.404 6.404 13 C -0.156 4.156 14 C 0.023 3.977 15 H 0.098 0.902 16 O -0.354 6.354 17 C -0.190 4.190 18 N -0.088 5.088 19 C -0.102 4.102 20 C -0.230 4.230 21 C -0.213 4.213 22 C -0.133 4.133 23 C -0.152 4.152 24 O -0.350 6.350 25 Si 0.615 3.385 26 H 0.076 0.924 27 H 0.073 0.927 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.079 0.921 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.078 0.922 35 H 0.172 0.828 36 H 0.245 0.755 37 H 0.226 0.774 38 H 0.234 0.766 39 H 0.112 0.888 40 H 0.134 0.866 41 H 0.234 0.766 42 H 0.131 0.869 43 H 0.103 0.897 44 H 0.177 0.823 45 H 0.153 0.847 46 H 0.154 0.846 47 H 0.132 0.868 48 H 0.227 0.773 49 H -0.178 1.178 50 H -0.179 1.179 Dipole moment (debyes) X Y Z Total from point charges -2.203 4.294 1.843 5.166 hybrid contribution -0.885 0.121 -0.234 0.924 sum -3.088 4.414 1.609 5.622 Atomic orbital electron populations 1.21811 0.94889 1.02143 1.02132 1.21940 0.96832 0.95503 1.03039 1.21517 0.91371 0.98022 1.00477 1.21856 1.02220 1.00522 0.95958 1.21884 0.95023 1.00006 0.83505 1.20659 0.79429 0.85671 0.84908 1.90854 1.38527 1.21738 1.86546 1.45535 1.54116 1.32246 1.03474 1.21443 0.98063 0.90089 0.86095 1.20332 0.81097 0.89506 0.77357 1.43813 1.19718 1.18959 1.58755 1.90768 1.56867 1.49297 1.43511 1.23310 0.98367 0.97743 0.96226 1.22691 0.96740 0.85299 0.92963 0.90150 1.86397 1.34809 1.44824 1.69336 1.23960 0.93523 0.98869 1.02656 1.43409 1.38795 1.06866 1.19681 1.21807 1.04828 0.84521 0.99014 1.20826 1.04795 0.98269 0.99149 1.20650 1.06428 0.92498 1.01703 1.20617 1.02845 0.94936 0.94904 1.24795 1.12204 0.88774 0.89456 1.86351 1.62163 1.63812 1.22629 0.93927 0.81069 0.81121 0.82399 0.92363 0.92690 0.92135 0.90303 0.92080 0.89335 0.91787 0.91620 0.92210 0.82777 0.75489 0.77423 0.76650 0.88847 0.86583 0.76562 0.86866 0.89710 0.82346 0.84733 0.84592 0.86803 0.77271 1.17756 1.17940 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.38 9.72 37.16 0.36 0.74 16 2 C -0.14 0.23 4.09 -26.73 -0.11 0.12 16 3 C -0.09 0.23 2.26 -90.62 -0.20 0.02 16 4 C -0.15 0.21 8.96 37.15 0.33 0.54 16 5 C 0.10 -0.13 2.48 -69.07 -0.17 -0.30 16 6 C 0.51 -0.14 5.04 -10.99 -0.06 -0.20 16 7 O -0.50 -1.91 13.56 5.55 0.08 -1.83 16 8 N -0.70 1.72 4.03 -47.92 -0.19 1.53 16 9 C 0.13 -0.10 0.97 -132.16 -0.13 -0.23 16 10 C 0.53 1.07 6.31 -10.99 -0.07 1.01 16 11 N -0.85 0.79 8.83 31.22 0.28 1.07 16 12 O -0.53 -3.39 16.76 5.56 0.09 -3.30 16 13 C -0.12 0.32 7.18 -25.92 -0.19 0.13 16 14 C 0.08 -0.22 5.28 -25.78 -0.14 -0.35 16 15 H 0.08 -0.29 8.14 -51.93 -0.42 -0.71 16 16 O -0.55 1.67 13.09 -35.23 -0.46 1.21 16 17 C -0.15 0.02 6.78 -25.78 -0.17 -0.16 16 18 N -0.41 -0.32 1.65 -106.70 -0.18 -0.50 16 19 C 0.03 0.07 7.45 -16.75 -0.12 -0.05 16 20 C -0.21 -0.61 10.86 -39.78 -0.43 -1.04 16 21 C -0.19 -0.42 9.43 -39.78 -0.37 -0.80 16 22 C -0.02 -0.02 5.71 -81.79 -0.47 -0.49 16 23 C -0.04 0.03 2.99 36.01 0.11 0.14 16 24 O -0.54 0.88 9.77 -35.23 -0.34 0.54 16 25 Si 0.71 -0.68 31.30 -169.99 -5.32 -6.00 16 26 H 0.06 -0.12 8.14 -51.93 -0.42 -0.54 16 27 H 0.05 -0.19 8.14 -51.93 -0.42 -0.61 16 28 H 0.06 -0.12 6.58 -51.93 -0.34 -0.47 16 29 H 0.08 0.00 5.61 -51.93 -0.29 -0.29 16 30 H 0.06 -0.07 6.08 -51.93 -0.32 -0.39 16 31 H 0.09 -0.37 7.90 -51.93 -0.41 -0.78 16 32 H 0.06 0.04 6.99 -51.93 -0.36 -0.33 16 33 H 0.06 -0.12 6.49 -51.93 -0.34 -0.45 16 34 H 0.06 -0.08 8.14 -51.93 -0.42 -0.51 16 35 H 0.16 -0.28 4.96 -51.94 -0.26 -0.53 16 36 H 0.41 -1.79 8.42 -40.82 -0.34 -2.14 16 37 H 0.40 -1.22 7.54 -40.82 -0.31 -1.53 16 38 H 0.40 -0.54 8.93 -40.82 -0.36 -0.90 16 39 H 0.09 -0.36 8.09 -51.93 -0.42 -0.78 16 40 H 0.12 -0.33 8.09 -51.93 -0.42 -0.75 16 41 H 0.39 -2.33 9.12 45.56 0.42 -1.91 16 42 H 0.11 0.15 7.34 -51.93 -0.38 -0.23 16 43 H 0.08 0.09 7.77 -51.93 -0.40 -0.32 16 44 H 0.16 0.42 6.39 -52.49 -0.34 0.08 16 45 H 0.13 0.28 8.06 -52.49 -0.42 -0.14 16 46 H 0.14 0.21 6.67 -52.48 -0.35 -0.14 16 47 H 0.11 -0.06 7.96 -51.93 -0.41 -0.47 16 48 H 0.38 -1.49 8.69 45.56 0.40 -1.10 16 49 H -0.25 -0.38 6.78 56.52 0.38 0.00 16 50 H -0.25 -0.41 7.11 56.52 0.40 -0.01 16 LS Contribution 388.65 15.07 5.86 5.86 Total: 0.00 -9.69 388.65 -8.60 -18.29 By element: Atomic # 1 Polarization: -9.37 SS G_CDS: -6.57 Total: -15.94 kcal Atomic # 6 Polarization: 0.92 SS G_CDS: -1.83 Total: -0.91 kcal Atomic # 7 Polarization: 2.19 SS G_CDS: -0.09 Total: 2.10 kcal Atomic # 8 Polarization: -2.75 SS G_CDS: -0.64 Total: -3.39 kcal Atomic # 14 Polarization: -0.68 SS G_CDS: -5.32 Total: -6.00 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -9.69 -8.60 -18.29 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12360566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.846 kcal (2) G-P(sol) polarization free energy of solvation -9.688 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.290 kcal (6) G-S(sol) free energy of system = (1) + (5) -61.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds