Wall clock time and date at job start Sun Mar 7 2021 04:58:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47198 * 2 1 4 4 C 1.52993 * 109.47254 * 291.94954 * 3 2 1 5 5 C 1.53008 * 109.47097 * 171.95259 * 3 2 1 6 6 C 1.50703 * 109.47069 * 303.35546 * 5 3 2 7 7 O 1.21284 * 120.00219 * 114.06000 * 6 5 3 8 8 N 1.34773 * 119.99898 * 294.06253 * 6 5 3 9 9 C 1.46498 * 120.00205 * 185.27426 * 8 6 5 10 10 C 1.50701 * 112.85237 * 297.07048 * 9 8 6 11 11 N 1.34775 * 119.99887 * 325.36823 * 10 9 8 12 12 O 1.21276 * 119.99936 * 145.35457 * 10 9 8 13 13 C 1.53780 * 113.61532 * 165.87196 * 9 8 6 14 14 C 1.53779 * 87.08290 * 270.88516 * 13 9 8 15 15 H 1.09000 * 113.61350 * 220.01252 * 14 13 9 16 16 O 1.42902 * 113.61064 * 89.11781 * 14 13 9 17 17 C 1.53784 * 113.61178 * 68.26674 * 9 8 6 18 18 N 1.46504 * 109.46983 * 63.34919 * 5 3 2 19 19 C 1.36340 * 125.63768 * 290.81505 * 18 5 3 20 20 C 1.34853 * 108.21301 * 180.02562 * 19 18 5 21 21 C 1.40885 * 107.42038 * 359.97438 * 20 19 18 22 22 C 1.34846 * 107.41635 * 359.73670 * 21 20 19 23 23 C 1.50709 * 125.89136 * 180.25057 * 22 21 20 24 24 O 1.42897 * 109.47119 * 210.20243 * 23 22 21 25 25 Si 1.86302 * 109.46830 * 330.20337 * 23 22 21 26 26 H 1.08994 * 109.47127 * 179.97438 * 1 2 3 27 27 H 1.09006 * 109.47046 * 299.99581 * 1 2 3 28 28 H 1.08997 * 109.47067 * 59.99760 * 1 2 3 29 29 H 1.09006 * 109.47046 * 240.00419 * 2 1 3 30 30 H 1.08999 * 109.47581 * 120.00232 * 2 1 3 31 31 H 1.08994 * 109.46838 * 51.95268 * 3 2 1 32 32 H 1.09000 * 109.47742 * 295.51269 * 4 3 2 33 33 H 1.09006 * 109.46856 * 55.51285 * 4 3 2 34 34 H 1.08997 * 109.47330 * 175.51107 * 4 3 2 35 35 H 1.08989 * 109.46972 * 183.35264 * 5 3 2 36 36 H 0.97009 * 120.00080 * 5.27276 * 8 6 5 37 37 H 0.97001 * 120.00232 * 4.92662 * 11 10 9 38 38 H 0.96998 * 119.99728 * 184.93597 * 11 10 9 39 39 H 1.09002 * 113.61706 * 25.44061 * 13 9 8 40 40 H 1.09006 * 113.61222 * 156.25030 * 13 9 8 41 41 H 0.96706 * 113.99930 * 179.97438 * 16 14 13 42 42 H 1.09001 * 113.61426 * 203.66495 * 17 9 8 43 43 H 1.08999 * 113.61557 * 334.57147 * 17 9 8 44 44 H 1.07991 * 125.89130 * 0.02562 * 19 18 5 45 45 H 1.08002 * 126.28467 * 180.02562 * 20 19 18 46 46 H 1.08006 * 126.29445 * 179.97438 * 21 20 19 47 47 H 1.09000 * 109.46984 * 90.20327 * 23 22 21 48 48 H 0.96710 * 113.99889 * 60.00231 * 24 23 22 49 49 H 1.48494 * 110.00197 * 58.68363 * 25 23 22 50 50 H 1.48503 * 109.99719 * 180.02562 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 1.7017 2.1031 -1.3379 5 6 3.5567 1.4472 0.2019 6 6 3.8955 0.7238 1.4798 7 8 4.5152 -0.3181 1.4409 8 7 3.5100 1.2346 2.6659 9 6 3.9372 0.5948 3.9127 10 6 3.4138 -0.8108 4.0585 11 7 2.1943 -1.1287 3.5809 12 8 4.0901 -1.6560 4.6053 13 6 3.7161 1.4669 5.1598 14 6 5.1207 2.0412 4.9107 15 1 5.6988 2.1919 5.8225 16 8 5.1280 3.1837 4.0524 17 6 5.4455 0.7219 4.1848 18 7 4.2017 0.7722 -0.9270 19 6 4.1346 -0.5622 -1.1984 20 6 4.8535 -0.8022 -2.3138 21 6 5.3833 0.4292 -2.7472 22 6 4.9632 1.3757 -1.8835 23 6 5.2842 2.8463 -1.9595 24 8 5.3109 3.3968 -0.6411 25 14 6.9490 3.0778 -2.7630 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.8933 -0.5138 -0.8901 30 1 1.8934 -0.5138 0.8899 31 1 1.5640 1.9961 0.8093 32 1 2.2412 1.5982 -2.1392 33 1 0.6293 2.0288 -1.5188 34 1 1.9933 3.1529 -1.3088 35 1 3.9120 2.4758 0.2615 36 1 2.9495 2.0259 2.6941 37 1 1.6832 -0.4732 3.0808 38 1 1.8275 -2.0129 3.7373 39 1 2.9177 2.2000 5.0441 40 1 3.6344 0.8946 6.0839 41 1 6.0087 3.5497 3.8922 42 1 5.8372 -0.0536 4.8430 43 1 6.0424 0.8539 3.2824 44 1 3.5983 -1.2997 -0.6199 45 1 4.9961 -1.7619 -2.7882 46 1 6.0077 0.5869 -3.6143 47 1 4.5218 3.3545 -2.5500 48 1 5.9678 2.9911 -0.0587 49 1 6.9439 2.4813 -4.1229 50 1 7.2774 4.5238 -2.8434 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12360566.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:13 Heat of formation + Delta-G solvation = -66.368779 kcal Electronic energy + Delta-G solvation = -35350.673410 eV Core-core repulsion = 30960.773950 eV Total energy + Delta-G solvation = -4389.899460 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 352.188 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -42.97783 -42.06028 -40.04888 -39.18590 -37.81117 -37.62301 -36.10439 -34.77711 -33.89872 -33.21806 -31.16793 -30.39011 -28.55592 -27.04119 -26.60160 -26.12094 -24.83248 -22.81698 -22.17496 -21.64723 -21.33378 -20.38237 -20.31795 -19.12499 -18.83954 -18.13420 -17.97426 -17.83871 -16.98719 -16.76598 -16.63339 -16.23939 -16.07442 -15.86800 -15.68589 -15.38731 -15.31694 -14.95533 -14.76739 -14.56332 -14.41680 -14.20584 -13.86016 -13.72787 -13.55603 -13.44804 -13.35099 -13.25727 -13.18332 -12.96464 -12.59392 -12.49670 -12.20730 -11.99436 -11.89186 -11.77033 -11.69211 -11.55837 -11.46205 -11.13229 -10.86597 -10.76656 -10.56277 -10.12851 -9.53851 -8.87838 -4.92522 0.99893 1.33608 1.35491 1.45378 1.60940 1.73322 1.93535 2.10341 2.23272 2.46140 3.02019 3.23691 3.28724 3.34550 3.46673 3.58148 3.62577 3.70221 3.77962 3.87803 4.01052 4.21022 4.24851 4.33764 4.40758 4.45826 4.51143 4.55478 4.61543 4.64332 4.65334 4.71166 4.72394 4.81295 4.86547 4.91320 4.92293 5.01163 5.07884 5.09736 5.28328 5.30666 5.32946 5.37808 5.41295 5.74936 6.01385 6.20364 6.25191 6.31586 6.46652 6.52686 6.87153 7.02320 7.18462 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.132 4.132 3 C -0.090 4.090 4 C -0.145 4.145 5 C 0.105 3.895 6 C 0.514 3.486 7 O -0.546 6.546 8 N -0.678 5.678 9 C 0.133 3.867 10 C 0.527 3.473 11 N -0.835 5.835 12 O -0.583 6.583 13 C -0.110 4.110 14 C 0.097 3.903 15 H 0.094 0.906 16 O -0.552 6.552 17 C -0.160 4.160 18 N -0.406 5.406 19 C 0.021 3.979 20 C -0.228 4.228 21 C -0.208 4.208 22 C -0.015 4.015 23 C -0.038 4.038 24 O -0.543 6.543 25 Si 0.782 3.218 26 H 0.051 0.949 27 H 0.072 0.928 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.056 0.944 31 H 0.119 0.881 32 H 0.040 0.960 33 H 0.071 0.929 34 H 0.065 0.935 35 H 0.168 0.832 36 H 0.423 0.577 37 H 0.410 0.590 38 H 0.404 0.596 39 H 0.114 0.886 40 H 0.117 0.883 41 H 0.400 0.600 42 H 0.092 0.908 43 H 0.069 0.931 44 H 0.152 0.848 45 H 0.133 0.867 46 H 0.138 0.862 47 H 0.118 0.882 48 H 0.392 0.608 49 H -0.289 1.289 50 H -0.284 1.284 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.636 7.070 3.197 8.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.169 4.169 3 C -0.109 4.109 4 C -0.202 4.202 5 C -0.001 4.001 6 C 0.300 3.700 7 O -0.422 6.422 8 N -0.334 5.334 9 C 0.042 3.958 10 C 0.311 3.689 11 N -0.398 5.398 12 O -0.462 6.462 13 C -0.148 4.148 14 C 0.037 3.963 15 H 0.111 0.889 16 O -0.360 6.360 17 C -0.199 4.199 18 N -0.082 5.082 19 C -0.109 4.109 20 C -0.252 4.252 21 C -0.233 4.233 22 C -0.126 4.126 23 C -0.148 4.148 24 O -0.350 6.350 25 Si 0.686 3.314 26 H 0.071 0.929 27 H 0.091 0.909 28 H 0.076 0.924 29 H 0.075 0.925 30 H 0.074 0.926 31 H 0.137 0.863 32 H 0.059 0.941 33 H 0.090 0.910 34 H 0.084 0.916 35 H 0.185 0.815 36 H 0.262 0.738 37 H 0.240 0.760 38 H 0.236 0.764 39 H 0.133 0.867 40 H 0.135 0.865 41 H 0.250 0.750 42 H 0.110 0.890 43 H 0.088 0.912 44 H 0.170 0.830 45 H 0.151 0.849 46 H 0.156 0.844 47 H 0.136 0.864 48 H 0.241 0.759 49 H -0.216 1.216 50 H -0.211 1.211 Dipole moment (debyes) X Y Z Total from point charges -3.457 6.717 2.918 8.099 hybrid contribution -0.523 -0.628 -0.615 1.023 sum -3.980 6.089 2.302 7.630 Atomic orbital electron populations 1.21795 0.94002 1.02057 1.02858 1.21862 0.97509 0.95773 1.01770 1.21574 0.90415 0.97778 1.01178 1.21812 1.02307 1.00551 0.95514 1.22063 0.95814 0.99943 0.82272 1.20787 0.78637 0.85007 0.85566 1.90859 1.40566 1.23688 1.87064 1.45325 1.53510 1.32173 1.02349 1.21442 0.97696 0.89189 0.87498 1.20860 0.81264 0.90232 0.76541 1.43736 1.18967 1.19374 1.57724 1.90738 1.58369 1.51000 1.46076 1.23332 0.99094 0.97413 0.94965 1.22572 0.96629 0.84146 0.92914 0.88855 1.86358 1.36197 1.44224 1.69210 1.23946 0.93645 1.00239 1.02057 1.43486 1.38405 1.06312 1.19994 1.21724 1.04961 0.85335 0.98902 1.20994 1.05626 0.98754 0.99805 1.20757 1.07373 0.92671 1.02485 1.20852 1.01878 0.95600 0.94307 1.24794 1.12313 0.87515 0.90202 1.86323 1.62797 1.63703 1.22188 0.93072 0.79953 0.78101 0.80257 0.92946 0.90919 0.92367 0.92457 0.92581 0.86316 0.94066 0.91008 0.91599 0.81525 0.73750 0.75988 0.76442 0.86749 0.86478 0.74959 0.89000 0.91203 0.83028 0.84883 0.84427 0.86449 0.75851 1.21595 1.21096 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 0.88 9.72 71.98 0.70 1.57 16 2 C -0.13 0.47 4.09 30.59 0.13 0.59 16 3 C -0.09 0.56 2.26 -10.79 -0.02 0.53 16 4 C -0.14 0.57 8.96 71.98 0.64 1.21 16 5 C 0.10 -0.34 2.48 44.25 0.11 -0.23 16 6 C 0.51 -0.45 5.04 87.66 0.44 -0.01 16 7 O -0.55 -4.72 13.56 -3.04 -0.04 -4.76 16 8 N -0.68 4.18 4.03 -423.92 -1.71 2.47 16 9 C 0.13 -0.24 0.97 3.39 0.00 -0.23 16 10 C 0.53 2.54 6.31 87.66 0.55 3.09 16 11 N -0.84 1.44 8.83 -173.54 -1.53 -0.10 16 12 O -0.58 -8.70 16.76 -3.02 -0.05 -8.75 16 13 C -0.11 0.76 7.18 31.12 0.22 0.98 16 14 C 0.10 -0.64 5.28 31.21 0.16 -0.47 16 15 H 0.09 -0.81 8.14 -2.39 -0.02 -0.83 16 16 O -0.55 4.63 13.09 -148.98 -1.95 2.68 16 17 C -0.16 -0.06 6.78 31.21 0.21 0.15 16 18 N -0.41 -0.84 1.65 -491.50 -0.81 -1.65 16 19 C 0.02 0.15 7.45 83.21 0.62 0.77 16 20 C -0.23 -1.83 10.86 22.14 0.24 -1.59 16 21 C -0.21 -1.23 9.43 22.14 0.21 -1.03 16 22 C -0.02 -0.04 5.71 41.08 0.23 0.20 16 23 C -0.04 0.07 2.99 71.24 0.21 0.29 16 24 O -0.54 2.66 9.77 -148.98 -1.46 1.21 16 25 Si 0.78 -1.34 31.30 68.60 2.15 0.81 16 26 H 0.05 -0.23 8.14 -2.39 -0.02 -0.25 16 27 H 0.07 -0.66 8.14 -2.38 -0.02 -0.68 16 28 H 0.06 -0.29 6.58 -2.39 -0.02 -0.30 16 29 H 0.06 0.08 5.61 -2.38 -0.01 0.06 16 30 H 0.06 -0.14 6.08 -2.39 -0.01 -0.15 16 31 H 0.12 -1.40 7.90 -2.39 -0.02 -1.42 16 32 H 0.04 0.05 6.99 -2.39 -0.02 0.04 16 33 H 0.07 -0.35 6.49 -2.38 -0.02 -0.36 16 34 H 0.06 -0.31 8.14 -2.39 -0.02 -0.33 16 35 H 0.17 -0.94 4.96 -2.39 -0.01 -0.96 16 36 H 0.42 -4.91 8.42 -92.70 -0.78 -5.69 16 37 H 0.41 -2.88 7.54 -92.71 -0.70 -3.58 16 38 H 0.40 -0.86 8.93 -92.71 -0.83 -1.69 16 39 H 0.11 -1.24 8.09 -2.39 -0.02 -1.26 16 40 H 0.12 -0.78 8.09 -2.38 -0.02 -0.80 16 41 H 0.40 -5.67 9.12 -74.05 -0.68 -6.34 16 42 H 0.09 0.44 7.34 -2.39 -0.02 0.43 16 43 H 0.07 0.22 7.77 -2.39 -0.02 0.20 16 44 H 0.15 1.17 6.39 -2.92 -0.02 1.15 16 45 H 0.13 0.93 8.06 -2.91 -0.02 0.90 16 46 H 0.14 0.66 6.67 -2.91 -0.02 0.64 16 47 H 0.12 -0.23 7.96 -2.39 -0.02 -0.25 16 48 H 0.39 -3.78 8.69 -74.05 -0.64 -4.42 16 49 H -0.29 -1.25 6.78 99.48 0.67 -0.57 16 50 H -0.28 -0.97 7.11 99.48 0.71 -0.26 16 Total: 0.00 -25.68 388.65 -3.32 -29.00 By element: Atomic # 1 Polarization: -24.14 SS G_CDS: -2.58 Total: -26.73 kcal Atomic # 6 Polarization: 1.15 SS G_CDS: 4.67 Total: 5.82 kcal Atomic # 7 Polarization: 4.77 SS G_CDS: -4.05 Total: 0.72 kcal Atomic # 8 Polarization: -6.13 SS G_CDS: -3.50 Total: -9.62 kcal Atomic # 14 Polarization: -1.34 SS G_CDS: 2.15 Total: 0.81 kcal Total: -25.68 -3.32 -29.00 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12360566.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.371 kcal (2) G-P(sol) polarization free energy of solvation -25.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.054 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.997 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds