Wall clock time and date at job start Sun Mar 7 2021 04:58:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34769 * 1 3 3 O 1.21278 * 120.00032 * 2 1 4 4 C 1.50704 * 120.00251 * 179.97438 * 2 1 3 5 5 N 1.46505 * 112.84744 * 325.54895 * 4 2 1 6 6 C 1.34782 * 119.99589 * 298.29064 * 5 4 2 7 7 O 1.21693 * 120.00116 * 355.00008 * 6 5 4 8 8 C 1.46425 * 119.99687 * 175.00203 * 6 5 4 9 9 C 1.34809 * 120.00189 * 180.02562 * 8 6 5 10 10 C 1.47203 * 120.00385 * 179.97438 * 9 8 6 11 11 C 1.39840 * 120.17391 * 180.02562 * 10 9 8 12 12 C 1.37887 * 119.82714 * 179.97438 * 11 10 9 13 13 C 1.38398 * 120.17448 * 359.97438 * 12 11 10 14 14 C 1.50695 * 119.83085 * 179.97438 * 13 12 11 15 15 O 1.42902 * 109.46870 * 65.00074 * 14 13 12 16 16 Si 1.86303 * 109.47387 * 185.00163 * 14 13 12 17 17 C 1.38407 * 120.34300 * 0.25462 * 13 12 11 18 18 C 1.37893 * 120.17148 * 359.48962 * 17 13 12 19 19 C 1.53777 * 113.61853 * 194.35037 * 4 2 1 20 20 C 1.54049 * 86.98613 * 219.98227 * 19 4 2 21 21 H 1.08997 * 113.62309 * 139.98019 * 20 19 4 22 22 O 1.42902 * 113.68781 * 270.87267 * 20 19 4 23 23 C 1.53779 * 87.07834 * 25.42934 * 20 19 4 24 24 H 0.97008 * 120.00400 * 175.08536 * 1 2 3 25 25 H 0.97002 * 120.00254 * 355.08394 * 1 2 3 26 26 H 0.97000 * 120.00302 * 118.29212 * 5 4 2 27 27 H 1.08006 * 120.00038 * 359.97438 * 8 6 5 28 28 H 1.07997 * 119.99643 * 0.02562 * 9 8 6 29 29 H 1.08002 * 120.08137 * 359.95645 * 11 10 9 30 30 H 1.08003 * 119.91250 * 180.02562 * 12 11 10 31 31 H 1.09000 * 109.47076 * 305.00106 * 14 13 12 32 32 H 0.96703 * 114.00163 * 179.97438 * 15 14 13 33 33 H 1.48501 * 110.00093 * 178.68485 * 16 14 13 34 34 H 1.48504 * 109.99543 * 300.00023 * 16 14 13 35 35 H 1.07998 * 119.91443 * 179.74319 * 17 13 12 36 36 H 1.07991 * 120.08816 * 180.24945 * 18 17 13 37 37 H 1.09007 * 113.61016 * 334.48530 * 19 4 2 38 38 H 1.08991 * 113.61423 * 105.38329 * 19 4 2 39 39 H 0.96698 * 113.99772 * 277.52827 * 22 20 19 40 40 H 1.09004 * 113.61388 * 220.02492 * 23 20 19 41 41 H 1.09003 * 113.61357 * 89.12016 * 23 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9541 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 7 1.4216 -2.3541 0.7648 6 6 1.2042 -2.1924 2.0851 7 8 1.6517 -1.2180 2.6607 8 6 0.4296 -3.1892 2.8269 9 6 0.2116 -3.0274 4.1474 10 6 -0.5676 -4.0292 4.8931 11 6 -0.7963 -3.8646 6.2628 12 6 -1.5276 -4.8071 6.9542 13 6 -2.0353 -5.9137 6.2960 14 6 -2.8330 -6.9393 7.0593 15 8 -4.0428 -6.3450 7.5338 16 14 -3.2420 -8.3690 5.9370 17 6 -1.8093 -6.0861 4.9414 18 6 -1.0843 -5.1497 4.2350 19 6 3.5914 -1.1559 0.3497 20 6 3.8689 -2.2059 -0.7429 21 1 4.7523 -1.9884 -1.3433 22 8 3.8402 -3.5525 -0.2656 23 6 2.5525 -1.7565 -1.3985 24 1 -0.4851 -0.8370 -0.0720 25 1 -0.4850 0.8370 0.0720 26 1 1.1281 -3.1649 0.3206 27 1 0.0321 -4.0538 2.3160 28 1 0.6081 -2.1622 4.6580 29 1 -0.4008 -3.0015 6.7778 30 1 -1.7054 -4.6812 8.0120 31 1 -2.2479 -7.2980 7.9061 32 1 -4.6076 -6.9491 8.0350 33 1 -4.0013 -9.4019 6.6865 34 1 -4.0397 -7.8930 4.7784 35 1 -2.2052 -6.9543 4.4356 36 1 -0.9122 -5.2836 3.1774 37 1 3.9969 -0.1702 0.1211 38 1 3.8402 -1.4941 1.3555 39 1 4.6654 -3.8409 0.1478 40 1 1.9631 -2.5793 -1.8031 41 1 2.6744 -0.9347 -2.1042 There are 58 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 58 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12360594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:17 Heat of formation + Delta-G solvation = -78.819520 kcal Electronic energy + Delta-G solvation = -26112.785667 eV Core-core repulsion = 22153.470408 eV Total energy + Delta-G solvation = -3959.315259 eV No. of doubly occupied orbitals = 58 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 319.130 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.23763 -40.64188 -39.97564 -39.17099 -37.86933 -36.12185 -35.17305 -34.78771 -33.78055 -32.20300 -31.29011 -27.66296 -27.03114 -26.53569 -24.19394 -23.86871 -22.44004 -21.96351 -20.50836 -20.35717 -19.13896 -18.65170 -18.54029 -18.08816 -17.90067 -17.41554 -16.75717 -16.68465 -16.16356 -15.93669 -15.70478 -15.64335 -15.44657 -15.25847 -14.97345 -14.63445 -14.33274 -14.03970 -13.87768 -13.77378 -13.56506 -13.49383 -13.19002 -13.02067 -12.53602 -12.29515 -12.05537 -11.72194 -11.69699 -11.46223 -11.32505 -11.16040 -10.86357 -10.75527 -10.49466 -10.11159 -9.97633 -9.24518 -4.92143 -0.55846 0.40087 0.86565 1.29897 1.36103 1.60955 1.94878 1.97257 2.15753 2.49532 2.77546 3.01312 3.30814 3.37529 3.46741 3.55432 3.70439 3.74520 3.84517 3.91764 3.95695 4.15370 4.22025 4.32604 4.36892 4.40378 4.55896 4.61283 4.70347 4.81342 4.84094 4.88284 4.91029 4.97259 5.09477 5.16063 5.33889 5.39128 5.48781 5.59474 5.74511 5.89738 6.28701 6.48976 6.56433 6.82765 7.14733 7.19766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.524 3.476 3 O -0.584 6.584 4 C 0.129 3.871 5 N -0.677 5.677 6 C 0.545 3.455 7 O -0.581 6.581 8 C -0.204 4.204 9 C -0.018 4.018 10 C -0.081 4.081 11 C -0.104 4.104 12 C -0.109 4.109 13 C -0.074 4.074 14 C -0.092 4.092 15 O -0.559 6.559 16 Si 0.769 3.231 17 C -0.125 4.125 18 C -0.092 4.092 19 C -0.163 4.163 20 C 0.095 3.905 21 H 0.095 0.905 22 O -0.554 6.554 23 C -0.108 4.108 24 H 0.414 0.586 25 H 0.405 0.595 26 H 0.426 0.574 27 H 0.168 0.832 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.130 0.870 31 H 0.094 0.906 32 H 0.395 0.605 33 H -0.290 1.290 34 H -0.293 1.293 35 H 0.147 0.853 36 H 0.161 0.839 37 H 0.092 0.908 38 H 0.065 0.935 39 H 0.399 0.601 40 H 0.116 0.884 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.630 -9.469 -3.055 9.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.308 3.692 3 O -0.463 6.463 4 C 0.038 3.962 5 N -0.332 5.332 6 C 0.336 3.664 7 O -0.462 6.462 8 C -0.224 4.224 9 C -0.038 4.038 10 C -0.081 4.081 11 C -0.122 4.122 12 C -0.127 4.127 13 C -0.074 4.074 14 C -0.201 4.201 15 O -0.369 6.369 16 Si 0.674 3.326 17 C -0.142 4.142 18 C -0.109 4.109 19 C -0.202 4.202 20 C 0.035 3.965 21 H 0.113 0.887 22 O -0.362 6.362 23 C -0.145 4.145 24 H 0.245 0.755 25 H 0.236 0.764 26 H 0.265 0.735 27 H 0.186 0.814 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.147 0.853 31 H 0.112 0.888 32 H 0.245 0.755 33 H -0.217 1.217 34 H -0.221 1.221 35 H 0.164 0.836 36 H 0.179 0.821 37 H 0.111 0.889 38 H 0.084 0.916 39 H 0.249 0.751 40 H 0.134 0.866 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.774 -8.166 -3.570 8.946 hybrid contribution -0.984 0.414 1.454 1.804 sum -1.758 -7.752 -2.116 8.225 Atomic orbital electron populations 1.43704 1.06509 1.13951 1.75578 1.20919 0.83494 0.90966 0.73866 1.90724 1.69362 1.34556 1.51669 1.21410 0.92535 0.85548 0.96683 1.45272 1.59248 1.20916 1.07742 1.18811 0.79529 0.85926 0.82128 1.90879 1.52437 1.33490 1.69372 1.22937 1.03274 1.01037 0.95123 1.22321 0.91547 0.95798 0.94159 1.19093 0.99699 0.95624 0.93707 1.21608 0.97559 0.99303 0.93686 1.21090 0.97132 0.93687 1.00802 1.19690 0.97429 0.96112 0.94209 1.25120 0.87587 1.02576 1.04777 1.86547 1.33235 1.42036 1.75108 0.94100 0.87351 0.74484 0.76680 1.21178 0.99754 1.00202 0.93078 1.21644 0.95690 0.92242 1.01365 1.23955 0.93452 1.01677 1.01115 1.22614 0.98644 0.81753 0.93449 0.88679 1.86344 1.43068 1.26577 1.80219 1.23327 0.96299 1.02773 0.92150 0.75526 0.76402 0.73457 0.81447 0.86310 0.84605 0.85252 0.88826 0.75455 1.21739 1.22069 0.83612 0.82110 0.88914 0.91630 0.75076 0.86564 0.86304 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -0.23 8.78 -173.54 -1.52 -1.75 16 2 C 0.52 3.91 6.48 87.66 0.57 4.48 16 3 O -0.58 -10.08 16.76 -3.02 -0.05 -10.13 16 4 C 0.13 0.17 0.95 3.38 0.00 0.18 16 5 N -0.68 1.89 4.16 -428.09 -1.78 0.11 16 6 C 0.55 1.70 7.30 86.37 0.63 2.33 16 7 O -0.58 -7.94 14.95 -4.33 -0.06 -8.00 16 8 C -0.20 0.49 9.41 23.62 0.22 0.71 16 9 C -0.02 -0.01 9.46 23.84 0.23 0.21 16 10 C -0.08 0.00 5.87 -20.15 -0.12 -0.12 16 11 C -0.10 -0.14 9.80 22.57 0.22 0.09 16 12 C -0.11 -0.20 9.66 22.22 0.21 0.02 16 13 C -0.07 -0.05 5.40 -19.79 -0.11 -0.16 16 14 C -0.09 0.17 2.79 71.23 0.20 0.36 16 15 O -0.56 -0.81 12.81 -148.98 -1.91 -2.72 16 16 Si 0.77 -2.97 29.83 68.60 2.05 -0.93 16 17 C -0.12 0.24 8.65 22.23 0.19 0.43 16 18 C -0.09 0.29 9.41 22.58 0.21 0.50 16 19 C -0.16 -0.65 6.72 31.21 0.21 -0.44 16 20 C 0.10 -0.35 5.28 31.21 0.16 -0.19 16 21 H 0.10 -0.61 8.14 -2.39 -0.02 -0.63 16 22 O -0.55 2.75 13.10 -148.98 -1.95 0.80 16 23 C -0.11 0.51 7.18 31.12 0.22 0.73 16 24 H 0.41 -2.50 8.42 -92.70 -0.78 -3.29 16 25 H 0.40 -0.09 8.93 -92.71 -0.83 -0.92 16 26 H 0.43 -4.00 8.62 -92.71 -0.80 -4.80 16 27 H 0.17 -1.72 6.07 -2.91 -0.02 -1.74 16 28 H 0.12 0.50 7.52 -2.91 -0.02 0.48 16 29 H 0.14 -0.11 8.06 -2.91 -0.02 -0.13 16 30 H 0.13 0.08 8.06 -2.91 -0.02 0.05 16 31 H 0.09 -0.50 7.96 -2.39 -0.02 -0.52 16 32 H 0.40 -2.56 8.74 -74.06 -0.65 -3.20 16 33 H -0.29 -0.25 7.11 99.48 0.71 0.46 16 34 H -0.29 -0.74 7.05 99.48 0.70 -0.04 16 35 H 0.15 -0.85 4.84 -2.91 -0.01 -0.87 16 36 H 0.16 -1.57 6.17 -2.92 -0.02 -1.59 16 37 H 0.09 0.71 7.34 -2.38 -0.02 0.70 16 38 H 0.06 0.53 7.56 -2.39 -0.02 0.51 16 39 H 0.40 -4.23 9.12 -74.06 -0.68 -4.90 16 40 H 0.12 -1.06 8.09 -2.38 -0.02 -1.08 16 41 H 0.12 -0.59 8.09 -2.39 -0.02 -0.61 16 Total: 0.00 -30.88 350.61 -4.73 -35.61 By element: Atomic # 1 Polarization: -19.57 SS G_CDS: -2.55 Total: -22.13 kcal Atomic # 6 Polarization: 6.08 SS G_CDS: 3.06 Total: 9.14 kcal Atomic # 7 Polarization: 1.66 SS G_CDS: -3.30 Total: -1.64 kcal Atomic # 8 Polarization: -16.08 SS G_CDS: -3.97 Total: -20.05 kcal Atomic # 14 Polarization: -2.97 SS G_CDS: 2.05 Total: -0.93 kcal Total: -30.88 -4.73 -35.61 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12360594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.212 kcal (2) G-P(sol) polarization free energy of solvation -30.882 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.725 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.820 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds