Wall clock time and date at job start Sun Mar 7 2021 04:58:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34771 * 1 3 3 O 1.21286 * 119.99755 * 2 1 4 4 C 1.50700 * 120.00136 * 179.97438 * 2 1 3 5 5 N 1.46494 * 112.84872 * 45.62130 * 4 2 1 6 6 C 1.34777 * 120.00301 * 54.36083 * 5 4 2 7 7 O 1.21628 * 119.99867 * 355.02829 * 6 5 4 8 8 C 1.47294 * 120.00151 * 175.02553 * 6 5 4 9 9 C 1.39878 * 120.04655 * 359.72416 * 8 6 5 10 10 C 1.36426 * 120.18071 * 179.71153 * 9 8 6 11 11 C 1.39923 * 120.28397 * 0.56606 * 10 9 8 12 12 C 1.47568 * 119.95611 * 179.73544 * 11 10 9 13 13 C 1.36098 * 125.94479 * 359.97438 * 12 11 10 14 14 C 1.40797 * 106.73337 * 179.97438 * 13 12 11 15 15 C 1.34839 * 107.05151 * 0.02562 * 14 13 12 16 16 C 1.50692 * 125.65690 * 180.02562 * 15 14 13 17 17 O 1.42900 * 109.47405 * 64.99820 * 16 15 14 18 18 Si 1.86292 * 109.47278 * 185.00040 * 16 15 14 19 19 O 1.34237 * 108.68935 * 359.75629 * 15 14 13 20 20 C 1.39606 * 120.08365 * 359.71344 * 11 10 9 21 21 C 1.38274 * 119.81711 * 0.02562 * 20 11 10 22 22 O 1.35673 * 120.13874 * 179.97438 * 21 20 11 23 23 C 1.53780 * 113.61443 * 274.42272 * 4 2 1 24 24 C 1.53773 * 87.08288 * 220.02070 * 23 4 2 25 25 H 1.09002 * 113.61958 * 139.98636 * 24 23 4 26 26 O 1.42909 * 113.61555 * 270.80299 * 24 23 4 27 27 C 1.53776 * 87.08370 * 25.43052 * 24 23 4 28 28 H 0.97007 * 120.00346 * 185.00678 * 1 2 3 29 29 H 0.96998 * 120.00574 * 5.00524 * 1 2 3 30 30 H 0.97003 * 120.00203 * 234.36048 * 5 4 2 31 31 H 1.08001 * 119.90463 * 0.02562 * 9 8 6 32 32 H 1.08007 * 119.85360 * 180.30163 * 10 9 8 33 33 H 1.07995 * 126.63615 * 0.02562 * 13 12 11 34 34 H 1.08004 * 126.47480 * 179.97438 * 14 13 12 35 35 H 1.09008 * 109.47130 * 305.00073 * 16 15 14 36 36 H 0.96701 * 114.00081 * 180.02562 * 17 16 15 37 37 H 1.48503 * 110.00252 * 299.99979 * 18 16 15 38 38 H 1.48504 * 110.00278 * 61.31682 * 18 16 15 39 39 H 1.08006 * 120.09116 * 179.97438 * 20 11 10 40 40 H 0.96698 * 114.00413 * 270.01825 * 22 21 20 41 41 H 1.09000 * 113.61307 * 105.47054 * 23 4 2 42 42 H 1.09001 * 113.61388 * 334.57546 * 23 4 2 43 43 H 0.96699 * 113.99835 * 178.47144 * 26 24 23 44 44 H 1.09005 * 113.61258 * 89.11365 * 27 24 23 45 45 H 1.08999 * 113.61941 * 220.01550 * 27 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1012 -1.3051 0.0006 5 7 1.5680 -2.2702 -0.9639 6 6 1.4365 -1.9253 -2.2601 7 8 1.6745 -0.7860 -2.6133 8 6 1.0045 -2.9279 -3.2489 9 6 0.7361 -4.2398 -2.8447 10 6 0.3302 -5.1691 -3.7572 11 6 0.1908 -4.8205 -5.1052 12 6 -0.2431 -5.8331 -6.0871 13 6 -0.5376 -7.1339 -5.8162 14 6 -0.9041 -7.7295 -7.0382 15 6 -0.8161 -6.7743 -7.9858 16 6 -1.1172 -6.9596 -9.4506 17 8 -2.5045 -7.2587 -9.6177 18 14 -0.7039 -5.3945 -10.3725 19 8 -0.4215 -5.6292 -7.4069 20 6 0.4612 -3.5159 -5.5222 21 6 0.8677 -2.5696 -4.5996 22 8 1.1328 -1.2999 -4.9978 23 6 2.3152 -1.8923 1.4057 24 6 3.7273 -2.2853 0.9408 25 1 4.4950 -2.1328 1.6994 26 8 3.7921 -3.5795 0.3382 27 6 3.6278 -1.1351 -0.0750 28 1 -0.4851 -0.8369 0.0733 29 1 -0.4851 0.8368 -0.0733 30 1 1.3095 -3.1577 -0.6696 31 1 0.8456 -4.5164 -1.8065 32 1 0.1197 -6.1794 -3.4385 33 1 -0.4986 -7.6159 -4.8505 34 1 -1.1991 -8.7576 -7.1884 35 1 -0.5185 -7.7816 -9.8434 36 1 -2.7702 -7.3913 -10.5380 37 1 -1.5135 -4.2662 -9.8464 38 1 0.7428 -5.0897 -10.2330 39 1 0.3540 -3.2468 -6.5627 40 1 2.0525 -1.1532 -5.2579 41 1 1.6740 -2.7462 1.6243 42 1 2.3087 -1.1432 2.1975 43 1 4.6732 -3.8227 0.0227 44 1 3.9803 -0.1790 0.3120 45 1 4.0463 -1.3777 -1.0518 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12807986.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:36 Heat of formation + Delta-G solvation = -114.286186 kcal Electronic energy + Delta-G solvation = -34220.255631 eV Core-core repulsion = 29365.585757 eV Total energy + Delta-G solvation = -4854.669874 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.129 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -43.88048 -42.39806 -41.18973 -39.50395 -39.12718 -38.12521 -37.83965 -36.10481 -34.75550 -34.55226 -34.19928 -33.07153 -31.44360 -30.60484 -27.53634 -27.04075 -26.55443 -24.54072 -24.15152 -22.83298 -22.42929 -21.97289 -21.45417 -20.46748 -19.80231 -19.12701 -18.85826 -18.69769 -18.12949 -18.07192 -17.88064 -17.19514 -17.12824 -16.67391 -16.55500 -16.26653 -16.04143 -15.88713 -15.72762 -15.60779 -15.34610 -15.10751 -14.69288 -14.53837 -14.35559 -14.21651 -14.00895 -13.78269 -13.68128 -13.65220 -13.52501 -13.24702 -12.84663 -12.74269 -12.55785 -12.27882 -12.03688 -11.71869 -11.40762 -11.25494 -11.11370 -10.87590 -10.80663 -10.75260 -10.46543 -10.17570 -10.07676 -9.12940 -5.15860 -0.91963 0.01813 0.50719 1.11203 1.28770 1.32628 1.48943 1.57684 1.76938 1.88848 1.95367 2.44292 2.53661 2.88530 2.98700 3.17934 3.25178 3.41183 3.48358 3.53305 3.67985 3.69292 3.71009 3.87839 3.89103 3.93162 4.09339 4.24724 4.31665 4.34179 4.53374 4.57678 4.58623 4.68304 4.69719 4.77687 4.79409 4.84150 4.86957 4.95426 4.98892 5.10137 5.27620 5.34294 5.42659 5.73782 5.85216 6.25944 6.37672 6.54125 6.80661 6.81911 7.04091 7.18777 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.836 5.836 2 C 0.528 3.472 3 O -0.584 6.584 4 C 0.129 3.871 5 N -0.676 5.676 6 C 0.558 3.442 7 O -0.550 6.550 8 C -0.173 4.173 9 C -0.042 4.042 10 C -0.105 4.105 11 C 0.025 3.975 12 C -0.006 4.006 13 C -0.164 4.164 14 C -0.174 4.174 15 C -0.031 4.031 16 C -0.034 4.034 17 O -0.559 6.559 18 Si 0.798 3.202 19 O -0.199 6.199 20 C -0.162 4.162 21 C 0.162 3.838 22 O -0.496 6.496 23 C -0.110 4.110 24 C 0.098 3.902 25 H 0.098 0.902 26 O -0.554 6.554 27 C -0.164 4.164 28 H 0.413 0.587 29 H 0.403 0.597 30 H 0.423 0.577 31 H 0.179 0.821 32 H 0.176 0.824 33 H 0.192 0.808 34 H 0.178 0.822 35 H 0.130 0.870 36 H 0.414 0.586 37 H -0.313 1.313 38 H -0.296 1.296 39 H 0.122 0.878 40 H 0.407 0.593 41 H 0.118 0.882 42 H 0.122 0.878 43 H 0.400 0.600 44 H 0.094 0.906 45 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.294 -12.541 1.135 12.596 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.399 5.399 2 C 0.312 3.688 3 O -0.463 6.463 4 C 0.038 3.962 5 N -0.333 5.333 6 C 0.347 3.653 7 O -0.428 6.428 8 C -0.177 4.177 9 C -0.060 4.060 10 C -0.123 4.123 11 C 0.025 3.975 12 C -0.055 4.055 13 C -0.183 4.183 14 C -0.193 4.193 15 C -0.080 4.080 16 C -0.144 4.144 17 O -0.371 6.371 18 Si 0.705 3.295 19 O -0.098 6.098 20 C -0.181 4.181 21 C 0.115 3.885 22 O -0.309 6.309 23 C -0.147 4.147 24 C 0.038 3.962 25 H 0.116 0.884 26 O -0.363 6.363 27 C -0.204 4.204 28 H 0.243 0.757 29 H 0.234 0.766 30 H 0.264 0.736 31 H 0.196 0.804 32 H 0.193 0.807 33 H 0.209 0.791 34 H 0.195 0.805 35 H 0.148 0.852 36 H 0.267 0.733 37 H -0.242 1.242 38 H -0.223 1.223 39 H 0.140 0.860 40 H 0.267 0.733 41 H 0.136 0.864 42 H 0.140 0.860 43 H 0.251 0.749 44 H 0.113 0.887 45 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -0.431 -9.952 1.677 10.102 hybrid contribution 0.504 0.080 -0.276 0.580 sum 0.073 -9.872 1.401 9.971 Atomic orbital electron populations 1.43688 1.06592 1.13797 1.75801 1.20805 0.83336 0.90927 0.73736 1.90717 1.69314 1.34722 1.51500 1.21484 0.94329 0.86938 0.93454 1.45266 1.65342 1.16990 1.05654 1.18242 0.77109 0.87247 0.82722 1.90908 1.50418 1.21537 1.79962 1.20414 1.08546 0.95647 0.93089 1.21226 0.93658 0.89314 1.01787 1.21092 0.99634 1.02369 0.89194 1.18013 0.97370 0.89902 0.92245 1.20749 1.08130 0.95884 0.80714 1.22333 1.02691 0.91995 1.01283 1.21920 1.04193 1.01863 0.91317 1.22228 1.05326 0.83852 0.96626 1.23889 0.88023 1.12543 0.89941 1.86413 1.21527 1.93899 1.35273 0.94475 0.76184 0.73281 0.85522 1.83959 1.68066 1.36184 1.21563 1.21475 1.03934 0.92675 1.00014 1.18459 0.95570 0.83820 0.90636 1.84729 1.34618 1.24685 1.86906 1.23381 0.97179 1.02174 0.92005 1.22548 0.97995 0.82128 0.93536 0.88446 1.86324 1.37916 1.31713 1.80299 1.23975 0.93149 1.01554 1.01713 0.75691 0.76572 0.73617 0.80390 0.80687 0.79070 0.80494 0.85218 0.73289 1.24165 1.22330 0.86039 0.73299 0.86385 0.85998 0.74939 0.88721 0.91656 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -1.80 8.81 -173.53 -1.53 -3.33 16 2 C 0.53 4.55 5.72 87.66 0.50 5.05 16 3 O -0.58 -10.97 16.72 -3.05 -0.05 -11.02 16 4 C 0.13 0.16 0.95 3.38 0.00 0.17 16 5 N -0.68 1.16 4.52 -427.28 -1.93 -0.77 16 6 C 0.56 3.34 7.51 86.62 0.65 3.99 16 7 O -0.55 -8.74 13.98 16.87 0.24 -8.50 16 8 C -0.17 -0.57 5.89 -19.97 -0.12 -0.69 16 9 C -0.04 0.20 9.47 22.24 0.21 0.41 16 10 C -0.11 0.40 9.48 22.25 0.21 0.61 16 11 C 0.03 0.09 5.87 -20.08 -0.12 -0.02 16 12 C -0.01 -0.04 7.02 24.24 0.17 0.13 16 13 C -0.16 -0.14 10.25 22.40 0.23 0.09 16 14 C -0.17 -0.40 10.78 22.11 0.24 -0.16 16 15 C -0.03 -0.17 6.24 24.90 0.16 -0.02 16 16 C -0.03 0.05 2.97 71.23 0.21 0.26 16 17 O -0.56 1.11 12.86 -148.98 -1.92 -0.81 16 18 Si 0.80 -0.10 32.11 68.60 2.20 2.10 16 19 O -0.20 -2.01 8.79 -6.07 -0.05 -2.06 16 20 C -0.16 -1.24 9.65 22.61 0.22 -1.02 16 21 C 0.16 1.29 6.71 22.81 0.15 1.44 16 22 O -0.50 -5.54 11.56 -68.91 -0.80 -6.34 16 23 C -0.11 0.66 7.16 31.12 0.22 0.89 16 24 C 0.10 -0.53 5.27 31.12 0.16 -0.37 16 25 H 0.10 -0.81 8.14 -2.39 -0.02 -0.83 16 26 O -0.55 3.98 13.08 -148.98 -1.95 2.03 16 27 C -0.16 -0.43 7.01 31.12 0.22 -0.21 16 28 H 0.41 -1.78 8.75 -92.70 -0.81 -2.59 16 29 H 0.40 0.89 8.93 -92.71 -0.83 0.06 16 30 H 0.42 -3.60 6.63 -92.71 -0.61 -4.22 16 31 H 0.18 -2.32 6.39 -2.91 -0.02 -2.34 16 32 H 0.18 -1.92 6.95 -2.91 -0.02 -1.94 16 33 H 0.19 -1.35 7.24 -2.91 -0.02 -1.37 16 34 H 0.18 -0.44 8.06 -2.91 -0.02 -0.47 16 35 H 0.13 -1.06 7.96 -2.38 -0.02 -1.08 16 36 H 0.41 -5.59 8.74 -74.06 -0.65 -6.24 16 37 H -0.31 -3.28 7.11 99.48 0.71 -2.58 16 38 H -0.30 -1.99 7.11 99.48 0.71 -1.28 16 39 H 0.12 1.21 7.90 -2.91 -0.02 1.18 16 40 H 0.41 1.82 9.06 -74.06 -0.67 1.15 16 41 H 0.12 -1.25 8.10 -2.39 -0.02 -1.27 16 42 H 0.12 -0.82 8.09 -2.39 -0.02 -0.84 16 43 H 0.40 -5.09 9.12 -74.06 -0.68 -5.77 16 44 H 0.09 0.60 7.40 -2.38 -0.02 0.58 16 45 H 0.06 0.38 8.14 -2.39 -0.02 0.36 16 Total: 0.00 -42.10 390.22 -5.52 -47.62 By element: Atomic # 1 Polarization: -26.42 SS G_CDS: -3.05 Total: -29.47 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 3.32 Total: 10.56 kcal Atomic # 7 Polarization: -0.64 SS G_CDS: -3.46 Total: -4.10 kcal Atomic # 8 Polarization: -22.17 SS G_CDS: -4.53 Total: -26.70 kcal Atomic # 14 Polarization: -0.10 SS G_CDS: 2.20 Total: 2.10 kcal Total: -42.10 -5.52 -47.62 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12807986.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.670 kcal (2) G-P(sol) polarization free energy of solvation -42.097 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.519 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds