Wall clock time and date at job start Sun Mar 7 2021 04:58:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.39285 * 121.03383 * 2 1 4 4 C 1.46490 * 134.20227 * 359.94821 * 3 2 1 5 5 C 1.50703 * 126.60208 * 0.02562 * 4 3 2 6 6 O 1.42902 * 109.46896 * 74.99723 * 5 4 3 7 7 Si 1.86299 * 109.47268 * 195.00164 * 5 4 3 8 8 C 1.34179 * 106.80553 * 180.26735 * 4 3 2 9 9 N 1.36951 * 109.94823 * 359.60510 * 8 4 3 10 10 C 1.37154 * 110.11541 * 0.41256 * 9 8 4 11 11 N 1.32815 * 132.96561 * 179.73676 * 10 9 8 12 12 C 1.31312 * 121.89098 * 180.02562 * 11 10 9 13 13 C 1.39756 * 121.02881 * 179.97438 * 2 1 3 14 14 C 1.47664 * 120.45222 * 359.97438 * 13 2 1 15 15 O 1.21574 * 120.00089 * 5.24067 * 14 13 2 16 16 N 1.34779 * 119.99624 * 185.23266 * 14 13 2 17 17 C 1.46504 * 119.99500 * 185.10628 * 16 14 13 18 18 C 1.50696 * 112.84795 * 284.92649 * 17 16 14 19 19 N 1.34778 * 120.00538 * 322.70663 * 18 17 16 20 20 O 1.21281 * 119.99761 * 142.70362 * 18 17 16 21 21 C 1.53785 * 113.61024 * 153.62624 * 17 16 14 22 22 C 1.53784 * 87.07887 * 220.01292 * 21 17 16 23 23 H 1.08992 * 113.61966 * 270.88529 * 22 21 17 24 24 O 1.42897 * 113.68965 * 139.98936 * 22 21 17 25 25 C 1.53777 * 113.61749 * 56.12951 * 17 16 14 26 26 H 1.09000 * 109.46848 * 96.48919 * 1 2 3 27 27 H 1.09001 * 109.46884 * 216.49016 * 1 2 3 28 28 H 1.08999 * 109.46745 * 336.49139 * 1 2 3 29 29 H 1.09002 * 109.46952 * 314.99897 * 5 4 3 30 30 H 0.96704 * 113.99650 * 180.02562 * 6 5 4 31 31 H 1.48505 * 109.99592 * 178.67980 * 7 5 4 32 32 H 1.48501 * 109.99954 * 299.99694 * 7 5 4 33 33 H 1.08001 * 125.02740 * 179.76240 * 8 4 3 34 34 H 0.97001 * 124.94710 * 180.16882 * 9 8 4 35 35 H 1.07997 * 119.31074 * 180.02562 * 12 11 10 36 36 H 0.96993 * 120.00331 * 5.10188 * 16 14 13 37 37 H 0.96999 * 119.99472 * 5.00189 * 19 18 17 38 38 H 0.97001 * 120.00148 * 184.99798 * 19 18 17 39 39 H 1.08998 * 113.61431 * 334.56320 * 21 17 16 40 40 H 1.08995 * 113.61238 * 105.46986 * 21 17 16 41 41 H 0.96696 * 114.00112 * 82.46494 * 24 22 21 42 42 H 1.08997 * 113.61135 * 254.52953 * 25 17 16 43 43 H 1.08998 * 113.61749 * 25.42468 * 25 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2251 1.1935 0.0000 4 6 1.8518 2.6100 -0.0009 5 6 0.4529 3.1706 -0.0018 6 8 -0.1194 3.0248 1.2995 7 14 0.5077 4.9762 -0.4574 8 6 2.9950 3.3125 -0.0064 9 7 4.0671 2.4603 -0.0001 10 6 3.6349 1.1586 0.0005 11 7 4.2721 -0.0067 0.0010 12 6 3.6267 -1.1503 0.0010 13 6 2.2274 -1.1976 0.0005 14 6 1.5224 -2.4950 0.0017 15 8 0.3109 -2.5286 -0.0940 16 7 2.2221 -3.6420 0.1086 17 6 1.5359 -4.9316 -0.0024 18 6 0.7424 -5.2804 1.2304 19 7 1.2196 -4.9646 2.4507 20 8 -0.3256 -5.8451 1.1244 21 6 2.4426 -6.0712 -0.4966 22 6 1.2476 -6.5518 -1.3369 23 1 0.5954 -7.2483 -0.8103 24 8 1.6100 -7.0091 -2.6413 25 6 0.7458 -5.0984 -1.3112 26 1 -0.3633 -0.1161 -1.0211 27 1 -0.3633 -0.8262 0.6112 28 1 -0.3633 0.9424 0.4099 29 1 -0.1544 2.6308 -0.7283 30 1 -1.0217 3.3647 1.3727 31 1 -0.8686 5.5330 -0.4928 32 1 1.3327 5.7233 0.5256 33 1 3.0601 4.3905 -0.0121 34 1 4.9968 2.7370 0.0000 35 1 4.1869 -2.0736 0.0018 36 1 3.1799 -3.6136 0.2591 37 1 2.0373 -4.4494 2.5332 38 1 0.7453 -5.2526 3.2463 39 1 3.2873 -5.7291 -1.0944 40 1 2.7332 -6.7694 0.2883 41 1 1.9265 -7.9226 -2.6640 42 1 -0.3332 -5.0112 -1.1839 43 1 1.1267 -4.4903 -2.1317 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_12890568.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:40 Heat of formation + Delta-G solvation = -47.812412 kcal Electronic energy + Delta-G solvation = -31189.725663 eV Core-core repulsion = 26817.139392 eV Total energy + Delta-G solvation = -4372.586271 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 347.136 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.89462 -42.27919 -40.46663 -39.04345 -38.64836 -37.86465 -36.52877 -35.09084 -34.86835 -34.10017 -32.05575 -30.99108 -28.95480 -27.12696 -26.80933 -26.20931 -24.66797 -23.96281 -22.95145 -21.88152 -20.45212 -20.36945 -19.44317 -19.12642 -18.73216 -18.49952 -18.34752 -17.75869 -17.51863 -16.95051 -16.64332 -16.46749 -16.16027 -15.91337 -15.78948 -15.45057 -15.16769 -15.09606 -14.75667 -14.69331 -14.17020 -14.11001 -13.82839 -13.75633 -13.58503 -13.51225 -13.31792 -13.21524 -13.01758 -12.67959 -12.49082 -12.00454 -11.79965 -11.56062 -11.17900 -11.11783 -10.98039 -10.80745 -10.53117 -10.29424 -10.26697 -9.64558 -9.14487 -4.86354 -0.37681 -0.07925 1.27233 1.32269 1.39253 1.61436 1.69361 1.70807 1.86053 1.99378 2.32686 2.73708 3.09817 3.26453 3.30483 3.35327 3.44446 3.57837 3.60534 3.66078 3.69017 3.77304 3.85312 4.11151 4.14001 4.18049 4.32748 4.43436 4.57550 4.58259 4.64559 4.66726 4.74552 4.79728 4.86602 4.92260 4.99459 5.16049 5.22262 5.26904 5.38877 5.71794 5.73471 6.21196 6.24099 6.36668 6.63095 6.82262 6.85892 7.06633 7.15234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.065 3.935 3 C -0.168 4.168 4 C -0.161 4.161 5 C -0.061 4.061 6 O -0.558 6.558 7 Si 0.776 3.224 8 C 0.088 3.912 9 N -0.559 5.559 10 C 0.291 3.709 11 N -0.513 5.513 12 C 0.185 3.815 13 C -0.239 4.239 14 C 0.573 3.427 15 O -0.551 6.551 16 N -0.696 5.696 17 C 0.134 3.866 18 C 0.531 3.469 19 N -0.830 5.830 20 O -0.575 6.575 21 C -0.131 4.131 22 C 0.080 3.920 23 H 0.085 0.915 24 O -0.569 6.569 25 C -0.113 4.113 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.079 0.921 30 H 0.392 0.608 31 H -0.292 1.292 32 H -0.276 1.276 33 H 0.216 0.784 34 H 0.439 0.561 35 H 0.202 0.798 36 H 0.423 0.577 37 H 0.415 0.585 38 H 0.409 0.591 39 H 0.133 0.867 40 H 0.105 0.895 41 H 0.399 0.601 42 H 0.059 0.941 43 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.562 2.860 -0.371 9.034 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.057 3.943 3 C -0.175 4.175 4 C -0.168 4.168 5 C -0.169 4.169 6 O -0.367 6.367 7 Si 0.679 3.321 8 C -0.039 4.039 9 N -0.166 5.166 10 C 0.058 3.942 11 N -0.226 5.226 12 C 0.016 3.984 13 C -0.246 4.246 14 C 0.362 3.638 15 O -0.429 6.429 16 N -0.353 5.353 17 C 0.044 3.956 18 C 0.314 3.686 19 N -0.393 5.393 20 O -0.453 6.453 21 C -0.169 4.169 22 C 0.021 3.979 23 H 0.103 0.897 24 O -0.378 6.378 25 C -0.151 4.151 26 H 0.096 0.904 27 H 0.097 0.903 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.242 0.758 31 H -0.219 1.219 32 H -0.202 1.202 33 H 0.232 0.768 34 H 0.281 0.719 35 H 0.218 0.782 36 H 0.264 0.736 37 H 0.246 0.754 38 H 0.241 0.759 39 H 0.152 0.848 40 H 0.123 0.877 41 H 0.250 0.750 42 H 0.078 0.922 43 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 8.324 3.788 -0.479 9.158 hybrid contribution -1.063 -0.624 1.552 1.982 sum 7.261 3.163 1.073 7.992 Atomic orbital electron populations 1.21086 0.89621 1.03841 1.03208 1.20038 0.96989 0.90185 0.87136 1.19734 0.93458 0.94237 1.10108 1.19711 0.94399 0.90204 1.12470 1.24480 0.91649 1.13371 0.87426 1.86590 1.34878 1.84444 1.30834 0.94121 0.80424 0.70490 0.87107 1.22222 0.84172 0.97109 1.00378 1.41570 1.10498 1.01819 1.62696 1.18750 0.89359 0.86872 0.99231 1.66541 1.40680 0.96333 1.19034 1.23067 0.89440 0.95458 0.90465 1.20383 0.95500 0.92694 1.16039 1.18081 0.86491 0.83834 0.75382 1.90813 1.15028 1.87253 1.49783 1.45548 1.12319 1.02734 1.74692 1.21351 0.96099 0.85722 0.92473 1.20390 0.84878 0.77444 0.85878 1.43615 1.30772 1.57710 1.07243 1.90762 1.22936 1.44460 1.87153 1.23942 0.98027 0.94507 1.00441 1.23104 0.95829 0.94757 0.84239 0.89740 1.86492 1.87201 1.35865 1.28218 1.23149 1.00443 0.96342 0.95206 0.90358 0.90288 0.90124 0.90354 0.75841 1.21878 1.20208 0.76751 0.71936 0.78153 0.73616 0.75421 0.75890 0.84849 0.87690 0.75009 0.92199 0.88545 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.95 8.47 71.24 0.60 -0.34 16 2 C 0.06 0.46 5.98 -19.24 -0.12 0.35 16 3 C -0.17 -1.00 6.16 -20.19 -0.12 -1.12 16 4 C -0.16 -0.31 5.61 -18.64 -0.10 -0.42 16 5 C -0.06 0.03 1.87 71.24 0.13 0.16 16 6 O -0.56 -1.37 11.65 -148.98 -1.73 -3.11 16 7 Si 0.78 -3.78 30.79 68.60 2.11 -1.67 16 8 C 0.09 -0.29 10.44 82.97 0.87 0.58 16 9 N -0.56 1.30 6.04 -192.25 -1.16 0.14 16 10 C 0.29 1.16 8.42 134.03 1.13 2.28 16 11 N -0.51 -1.61 10.37 -191.75 -1.99 -3.60 16 12 C 0.18 -0.16 10.66 85.20 0.91 0.75 16 13 C -0.24 -0.84 5.89 -19.99 -0.12 -0.96 16 14 C 0.57 2.41 7.38 86.73 0.64 3.05 16 15 O -0.55 -6.90 12.50 -3.95 -0.05 -6.94 16 16 N -0.70 2.49 4.62 -426.93 -1.97 0.52 16 17 C 0.13 0.06 1.07 3.38 0.00 0.06 16 18 C 0.53 2.83 6.89 87.66 0.60 3.43 16 19 N -0.83 1.87 8.83 -173.53 -1.53 0.34 16 20 O -0.58 -8.66 16.23 -3.03 -0.05 -8.71 16 21 C -0.13 0.73 7.25 31.12 0.23 0.95 16 22 C 0.08 0.13 4.82 31.12 0.15 0.28 16 23 H 0.08 0.31 7.67 -2.39 -0.02 0.29 16 24 O -0.57 -0.82 13.67 -148.98 -2.04 -2.86 16 25 C -0.11 -0.73 5.83 31.12 0.18 -0.55 16 26 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 27 H 0.08 0.92 5.94 -2.39 -0.01 0.91 16 28 H 0.08 0.52 4.78 -2.39 -0.01 0.51 16 29 H 0.08 -0.12 7.13 -2.39 -0.02 -0.14 16 30 H 0.39 -1.97 8.74 -74.05 -0.65 -2.62 16 31 H -0.29 -0.21 7.11 99.48 0.71 0.50 16 32 H -0.28 0.27 7.05 99.48 0.70 0.97 16 33 H 0.22 -2.27 6.31 -2.91 -0.02 -2.29 16 34 H 0.44 -3.59 8.96 -92.71 -0.83 -4.42 16 35 H 0.20 -2.10 6.46 -2.91 -0.02 -2.12 16 36 H 0.42 -5.01 6.87 -92.71 -0.64 -5.64 16 37 H 0.41 -3.39 8.36 -92.71 -0.78 -4.17 16 38 H 0.41 -1.30 8.93 -92.71 -0.83 -2.13 16 39 H 0.13 -1.26 8.14 -2.39 -0.02 -1.27 16 40 H 0.10 -0.94 8.10 -2.39 -0.02 -0.96 16 41 H 0.40 -3.06 9.12 -74.06 -0.68 -3.73 16 42 H 0.06 0.82 7.61 -2.39 -0.02 0.80 16 43 H 0.10 0.66 8.14 -2.39 -0.02 0.64 16 Total: 0.00 -35.06 355.00 -6.61 -41.66 By element: Atomic # 1 Polarization: -21.11 SS G_CDS: -3.18 Total: -24.29 kcal Atomic # 6 Polarization: 3.53 SS G_CDS: 4.98 Total: 8.52 kcal Atomic # 7 Polarization: 4.05 SS G_CDS: -6.65 Total: -2.60 kcal Atomic # 8 Polarization: -17.74 SS G_CDS: -3.87 Total: -21.62 kcal Atomic # 14 Polarization: -3.78 SS G_CDS: 2.11 Total: -1.67 kcal Total: -35.06 -6.61 -41.66 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_12890568.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.148 kcal (2) G-P(sol) polarization free energy of solvation -35.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -41.205 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.608 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.664 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.812 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds