Wall clock time and date at job start Sun Mar 7 2021 04:58:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34780 * 1 3 3 O 1.21280 * 119.99511 * 2 1 4 4 C 1.50695 * 120.00046 * 180.02562 * 2 1 3 5 5 N 1.46502 * 112.85116 * 36.11933 * 4 2 1 6 6 C 1.34772 * 119.99955 * 67.35731 * 5 4 2 7 7 O 1.21589 * 120.00054 * 355.05742 * 6 5 4 8 8 C 1.47565 * 120.00364 * 175.05517 * 6 5 4 9 9 C 1.39431 * 120.11785 * 0.25610 * 8 6 5 10 10 C 1.39215 * 119.75756 * 180.27394 * 9 8 6 11 11 C 1.47816 * 119.99798 * 179.75197 * 10 9 8 12 12 C 1.35937 * 125.92475 * 179.72174 * 11 10 9 13 13 C 1.40973 * 106.73829 * 179.72882 * 12 11 10 14 14 C 1.34701 * 107.03090 * 0.40276 * 13 12 11 15 15 C 1.50701 * 125.66632 * 179.85326 * 14 13 12 16 16 O 1.42900 * 109.47050 * 299.71649 * 15 14 13 17 17 Si 1.86306 * 109.47067 * 179.71995 * 15 14 13 18 18 O 1.34345 * 108.66882 * 359.59179 * 14 13 12 19 19 C 1.39799 * 119.99972 * 359.46819 * 10 9 8 20 20 C 1.37817 * 120.24381 * 0.25832 * 19 10 9 21 21 C 1.38774 * 120.24220 * 0.02562 * 20 19 10 22 22 O 1.35652 * 119.99885 * 179.97438 * 21 20 19 23 23 C 1.53782 * 113.69218 * 264.85135 * 4 2 1 24 24 C 1.53777 * 87.08385 * 220.00880 * 23 4 2 25 25 H 1.08998 * 113.61825 * 139.97582 * 24 23 4 26 26 O 1.42899 * 113.69293 * 270.87230 * 24 23 4 27 27 C 1.53781 * 113.61577 * 167.31473 * 4 2 1 28 28 H 0.97001 * 119.99828 * 175.00701 * 1 2 3 29 29 H 0.97002 * 120.00437 * 355.00188 * 1 2 3 30 30 H 0.97000 * 119.99942 * 247.35864 * 5 4 2 31 31 H 1.08005 * 120.12260 * 359.97438 * 9 8 6 32 32 H 1.08000 * 126.63604 * 359.94410 * 12 11 10 33 33 H 1.08000 * 126.48614 * 180.29660 * 13 12 11 34 34 H 1.08999 * 109.47281 * 59.72604 * 15 14 13 35 35 H 0.96697 * 114.00488 * 300.00292 * 16 15 14 36 36 H 1.48505 * 109.99991 * 58.68064 * 17 15 14 37 37 H 1.48496 * 110.00101 * 179.97438 * 17 15 14 38 38 H 1.07997 * 119.88038 * 180.27535 * 19 10 9 39 39 H 1.08006 * 119.88045 * 179.97438 * 20 19 10 40 40 H 0.96702 * 113.99872 * 89.99958 * 22 21 20 41 41 H 1.08998 * 113.61194 * 334.55491 * 23 4 2 42 42 H 1.09003 * 113.61768 * 105.45950 * 23 4 2 43 43 H 0.96696 * 113.99713 * 277.53761 * 26 24 23 44 44 H 1.08996 * 113.61614 * 254.61720 * 27 4 2 45 45 H 1.09003 * 113.60907 * 25.51510 * 27 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9541 1.0504 0.0000 4 6 2.1013 -1.3050 -0.0006 5 7 1.4413 -2.3427 -0.7969 6 6 1.3585 -2.2139 -2.1358 7 8 1.7506 -1.1966 -2.6742 8 6 0.7922 -3.3075 -2.9487 9 6 0.3370 -4.4731 -2.3336 10 6 -0.1906 -5.5024 -3.1082 11 6 -0.6696 -6.7426 -2.4621 12 6 -1.2088 -7.8163 -3.0981 13 6 -1.5163 -8.7657 -2.1024 14 6 -1.1617 -8.2264 -0.9201 15 6 -1.3113 -8.8858 0.4267 16 8 -2.6911 -9.1688 0.6679 17 14 -0.6708 -7.7437 1.7520 18 8 -0.6472 -7.0052 -1.1415 19 6 -0.2729 -5.3608 -4.4966 20 6 0.1718 -4.2064 -5.1041 21 6 0.7050 -3.1764 -4.3422 22 8 1.1416 -2.0425 -4.9454 23 6 2.5197 -1.7776 1.4017 24 6 3.8519 -2.2157 0.7708 25 1 4.7204 -2.0067 1.3953 26 8 3.8375 -3.5541 0.2702 27 6 3.5998 -1.1511 -0.3099 28 1 -0.4850 -0.8369 -0.0731 29 1 -0.4851 0.8368 0.0732 30 1 1.0639 -3.1224 -0.3603 31 1 0.3981 -4.5790 -1.2605 32 1 -1.3674 -7.9230 -4.1610 33 1 -1.9550 -9.7402 -2.2578 34 1 -0.7417 -9.8150 0.4416 35 1 -3.2589 -8.3860 0.6688 36 1 -1.4180 -6.4607 1.7214 37 1 -0.8133 -8.3822 3.0851 38 1 -0.6867 -6.1587 -5.0953 39 1 0.1058 -4.1034 -6.1772 40 1 0.4634 -1.3592 -5.0365 41 1 2.6238 -0.9668 2.1227 42 1 1.9218 -2.6071 1.7795 43 1 3.9955 -4.2281 0.9453 44 1 3.8738 -1.4747 -1.3140 45 1 3.9991 -0.1689 -0.0569 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13259648.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:58:54 Heat of formation + Delta-G solvation = -112.988506 kcal Electronic energy + Delta-G solvation = -35079.153393 eV Core-core repulsion = 30224.539791 eV Total energy + Delta-G solvation = -4854.613602 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.129 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.66340 -42.36999 -41.08352 -39.51281 -39.02356 -38.18702 -37.82760 -36.09409 -34.81367 -34.34317 -33.93037 -32.71238 -32.07359 -30.02284 -27.24641 -26.93121 -26.36779 -25.20012 -23.57529 -23.01182 -22.36885 -21.89545 -21.19542 -20.40285 -19.70071 -19.18188 -19.12287 -18.41897 -18.01120 -17.89765 -17.56601 -17.43957 -16.97398 -16.62029 -16.48434 -16.26573 -16.09058 -15.80666 -15.73190 -15.53038 -15.20362 -14.99553 -14.59533 -14.42682 -14.30962 -13.93263 -13.83371 -13.75740 -13.52665 -13.40696 -13.23207 -13.17409 -13.09947 -12.84843 -12.37110 -12.08816 -11.98795 -11.79412 -11.36929 -11.04148 -11.01670 -10.90183 -10.79038 -10.78032 -10.43636 -10.28682 -10.04098 -8.87918 -4.90664 -0.55053 -0.19120 0.79249 1.20629 1.34152 1.49993 1.51446 1.74372 1.78430 1.92781 1.97344 2.45097 2.64853 3.04753 3.11055 3.23327 3.27840 3.32040 3.44074 3.49210 3.67511 3.67942 3.89662 3.95486 4.04463 4.07734 4.22825 4.33739 4.38765 4.47951 4.61844 4.65495 4.69278 4.72270 4.80300 4.82784 4.84809 4.90522 4.92282 5.04553 5.15447 5.22364 5.29539 5.46485 5.51703 5.75211 6.00875 6.24844 6.37366 6.38901 6.70786 6.97855 7.07165 7.17792 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.525 3.475 3 O -0.582 6.582 4 C 0.131 3.869 5 N -0.681 5.681 6 C 0.561 3.439 7 O -0.548 6.548 8 C -0.175 4.175 9 C -0.044 4.044 10 C -0.040 4.040 11 C 0.026 3.974 12 C -0.192 4.192 13 C -0.184 4.184 14 C -0.051 4.051 15 C -0.044 4.044 16 O -0.537 6.537 17 Si 0.779 3.221 18 O -0.168 6.168 19 C -0.045 4.045 20 C -0.148 4.148 21 C 0.161 3.839 22 O -0.496 6.496 23 C -0.139 4.139 24 C 0.096 3.904 25 H 0.097 0.903 26 O -0.558 6.558 27 C -0.132 4.132 28 H 0.412 0.588 29 H 0.406 0.594 30 H 0.419 0.581 31 H 0.155 0.845 32 H 0.171 0.829 33 H 0.159 0.841 34 H 0.149 0.851 35 H 0.390 0.610 36 H -0.281 1.281 37 H -0.289 1.289 38 H 0.164 0.836 39 H 0.161 0.839 40 H 0.409 0.591 41 H 0.115 0.885 42 H 0.122 0.878 43 H 0.403 0.597 44 H 0.056 0.944 45 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.634 -7.202 3.477 8.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.309 3.691 3 O -0.461 6.461 4 C 0.040 3.960 5 N -0.337 5.337 6 C 0.349 3.651 7 O -0.426 6.426 8 C -0.179 4.179 9 C -0.062 4.062 10 C -0.040 4.040 11 C -0.023 4.023 12 C -0.211 4.211 13 C -0.204 4.204 14 C -0.101 4.101 15 C -0.152 4.152 16 O -0.345 6.345 17 Si 0.682 3.318 18 O -0.065 6.065 19 C -0.063 4.063 20 C -0.167 4.167 21 C 0.115 3.885 22 O -0.310 6.310 23 C -0.177 4.177 24 C 0.036 3.964 25 H 0.115 0.885 26 O -0.367 6.367 27 C -0.171 4.171 28 H 0.242 0.758 29 H 0.237 0.763 30 H 0.259 0.741 31 H 0.172 0.828 32 H 0.189 0.811 33 H 0.176 0.824 34 H 0.166 0.834 35 H 0.240 0.760 36 H -0.207 1.207 37 H -0.216 1.216 38 H 0.181 0.819 39 H 0.178 0.822 40 H 0.269 0.731 41 H 0.133 0.867 42 H 0.140 0.860 43 H 0.254 0.746 44 H 0.075 0.925 45 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.265 -5.857 3.489 7.184 hybrid contribution -2.179 -0.068 -0.090 2.182 sum -4.445 -5.926 3.399 8.150 Atomic orbital electron populations 1.43681 1.06468 1.13877 1.75670 1.20876 0.83482 0.90871 0.73866 1.90732 1.69333 1.34458 1.51552 1.21449 0.92482 0.85601 0.96485 1.45273 1.59007 1.24061 1.05401 1.18305 0.78081 0.86438 0.82271 1.90875 1.48614 1.30831 1.72271 1.20149 1.07618 0.96429 0.93684 1.21417 0.93614 0.90296 1.00907 1.17667 1.02614 0.90601 0.93113 1.20364 1.05113 0.96182 0.80668 1.22144 1.03962 0.93078 1.01892 1.21772 1.05044 1.02092 0.91452 1.23034 1.03774 0.84498 0.98790 1.24605 0.86940 1.07839 0.95839 1.86645 1.17245 1.37741 1.92915 0.93627 0.89712 0.74632 0.73878 1.83891 1.64922 1.32196 1.25526 1.21410 0.95016 0.97444 0.92413 1.21548 0.99892 0.93243 1.01989 1.18917 0.91998 0.88640 0.88942 1.84727 1.41082 1.25556 1.79605 1.23925 0.98320 1.03638 0.91788 1.22520 0.97014 0.83000 0.93816 0.88510 1.86493 1.94883 1.15003 1.40280 1.23316 0.93176 1.00105 1.00454 0.75803 0.76264 0.74114 0.82761 0.81107 0.82378 0.83376 0.76012 1.20662 1.21566 0.81872 0.82166 0.73095 0.86717 0.85996 0.74602 0.92489 0.87925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 0.36 8.83 -173.53 -1.53 -1.17 16 2 C 0.53 3.67 6.61 87.65 0.58 4.25 16 3 O -0.58 -9.75 16.74 -3.03 -0.05 -9.80 16 4 C 0.13 0.21 0.96 3.38 0.00 0.21 16 5 N -0.68 0.92 4.03 -427.03 -1.72 -0.80 16 6 C 0.56 3.11 7.24 86.70 0.63 3.74 16 7 O -0.55 -7.99 13.85 16.99 0.24 -7.75 16 8 C -0.18 -0.35 5.88 -20.04 -0.12 -0.47 16 9 C -0.04 0.12 9.20 22.79 0.21 0.33 16 10 C -0.04 0.11 5.87 -20.13 -0.12 -0.01 16 11 C 0.03 -0.05 7.03 24.27 0.17 0.12 16 12 C -0.19 0.53 10.26 22.41 0.23 0.76 16 13 C -0.18 0.32 10.77 22.13 0.24 0.56 16 14 C -0.05 0.13 6.22 24.87 0.15 0.28 16 15 C -0.04 0.21 2.98 71.24 0.21 0.42 16 16 O -0.54 1.06 12.87 -148.98 -1.92 -0.86 16 17 Si 0.78 -4.88 32.10 68.60 2.20 -2.67 16 18 O -0.17 0.36 8.78 -6.53 -0.06 0.30 16 19 C -0.04 0.21 9.54 22.55 0.22 0.42 16 20 C -0.15 0.36 9.96 22.30 0.22 0.58 16 21 C 0.16 0.45 6.72 22.88 0.15 0.61 16 22 O -0.50 -2.99 11.55 -68.68 -0.79 -3.79 16 23 C -0.14 0.88 7.20 31.12 0.22 1.10 16 24 C 0.10 -0.34 5.27 31.12 0.16 -0.18 16 25 H 0.10 -0.64 8.14 -2.39 -0.02 -0.66 16 26 O -0.56 2.51 13.09 -148.98 -1.95 0.56 16 27 C -0.13 -0.77 6.66 31.12 0.21 -0.56 16 28 H 0.41 -2.47 8.33 -92.71 -0.77 -3.24 16 29 H 0.41 -0.62 8.93 -92.71 -0.83 -1.45 16 30 H 0.42 -3.34 6.71 -92.71 -0.62 -3.96 16 31 H 0.15 -1.18 6.25 -2.91 -0.02 -1.20 16 32 H 0.17 -1.23 7.24 -2.91 -0.02 -1.25 16 33 H 0.16 -0.51 8.06 -2.91 -0.02 -0.53 16 34 H 0.15 -1.11 7.96 -2.39 -0.02 -1.13 16 35 H 0.39 -2.88 8.70 -74.06 -0.64 -3.52 16 36 H -0.28 0.60 7.11 99.48 0.71 1.31 16 37 H -0.29 -0.10 7.11 99.48 0.71 0.61 16 38 H 0.16 -1.60 6.96 -2.91 -0.02 -1.62 16 39 H 0.16 -0.96 8.06 -2.91 -0.02 -0.98 16 40 H 0.41 -0.36 9.06 -74.06 -0.67 -1.03 16 41 H 0.11 -0.73 8.10 -2.39 -0.02 -0.75 16 42 H 0.12 -1.54 8.10 -2.39 -0.02 -1.56 16 43 H 0.40 -5.72 9.12 -74.06 -0.68 -6.40 16 44 H 0.06 0.71 7.38 -2.39 -0.02 0.69 16 45 H 0.10 0.87 7.35 -2.39 -0.02 0.85 16 Total: 0.00 -34.41 388.87 -5.23 -39.64 By element: Atomic # 1 Polarization: -22.80 SS G_CDS: -3.02 Total: -25.82 kcal Atomic # 6 Polarization: 8.78 SS G_CDS: 3.38 Total: 12.16 kcal Atomic # 7 Polarization: 1.28 SS G_CDS: -3.25 Total: -1.97 kcal Atomic # 8 Polarization: -16.80 SS G_CDS: -4.53 Total: -21.33 kcal Atomic # 14 Polarization: -4.88 SS G_CDS: 2.20 Total: -2.67 kcal Total: -34.41 -5.23 -39.64 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13259648.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.353 kcal (2) G-P(sol) polarization free energy of solvation -34.410 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.636 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.989 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds