Wall clock time and date at job start Sun Mar 7 2021 04:59:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46504 * 1 3 3 C 1.34660 * 124.85035 * 2 1 4 4 C 1.36765 * 108.39333 * 180.02562 * 3 2 1 5 5 C 1.47267 * 126.93738 * 179.97438 * 4 3 2 6 6 O 1.21624 * 120.00002 * 180.02562 * 5 4 3 7 7 N 1.34773 * 120.00049 * 0.02562 * 5 4 3 8 8 C 1.46500 * 119.99851 * 175.03371 * 7 5 4 9 9 C 1.50699 * 112.90742 * 54.31125 * 8 7 5 10 10 N 1.34773 * 120.00275 * 45.66872 * 9 8 7 11 11 O 1.21283 * 119.99603 * 225.67493 * 9 8 7 12 12 C 1.53958 * 113.61603 * 282.98017 * 8 7 5 13 13 C 1.53778 * 87.11019 * 270.84026 * 12 8 7 14 14 H 1.08998 * 113.61784 * 220.08555 * 13 12 8 15 15 O 1.42907 * 113.61229 * 89.18994 * 13 12 8 16 16 C 1.53781 * 87.08527 * 334.63825 * 13 12 8 17 17 C 1.46678 * 106.11955 * 0.26024 * 4 3 2 18 18 C 1.34491 * 106.33429 * 359.56942 * 17 4 3 19 19 C 1.50694 * 125.57462 * 180.14769 * 18 17 4 20 20 O 1.42904 * 109.47038 * 150.33731 * 19 18 17 21 21 Si 1.86302 * 109.47336 * 30.33603 * 19 18 17 22 22 H 1.09003 * 109.46750 * 89.97762 * 1 2 3 23 23 H 1.09001 * 109.47357 * 209.97307 * 1 2 3 24 24 H 1.08993 * 109.47347 * 329.97772 * 1 2 3 25 25 H 1.07999 * 125.80181 * 359.97438 * 3 2 1 26 26 H 0.96996 * 120.00358 * 355.04038 * 7 5 4 27 27 H 0.97005 * 119.99997 * 5.00801 * 10 9 8 28 28 H 0.97002 * 120.00011 * 185.00553 * 10 9 8 29 29 H 1.08999 * 113.53347 * 156.29204 * 12 8 7 30 30 H 1.08993 * 113.74187 * 25.42549 * 12 8 7 31 31 H 0.96693 * 114.00404 * 82.49842 * 15 13 12 32 32 H 1.09002 * 113.61363 * 139.97966 * 16 13 12 33 33 H 1.08991 * 113.61366 * 270.79984 * 16 13 12 34 34 H 1.08000 * 126.83744 * 179.73886 * 17 4 3 35 35 H 1.09003 * 109.47054 * 270.33414 * 19 18 17 36 36 H 0.96697 * 113.99957 * 299.99459 * 20 19 18 37 37 H 1.48503 * 110.00039 * 180.02562 * 21 19 18 38 38 H 1.48508 * 109.99791 * 301.31849 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2345 1.1051 0.0000 4 6 3.5462 0.7176 -0.0006 5 6 4.7283 1.5958 -0.0013 6 8 5.8446 1.1129 -0.0023 7 7 4.5733 2.9346 -0.0009 8 6 5.7448 3.8076 0.1082 9 6 6.7913 3.5182 -0.9369 10 7 6.4291 3.3445 -2.2233 11 8 7.9595 3.4416 -0.6201 12 6 6.3091 3.9067 1.5371 13 6 5.3457 5.0858 1.7523 14 1 5.7808 5.9069 2.3219 15 8 4.0597 4.6933 2.2364 16 6 5.3921 5.2995 0.2301 17 6 3.5375 -0.7491 -0.0074 18 6 2.2447 -1.1198 -0.0006 19 6 1.7398 -2.5396 -0.0007 20 8 0.4811 -2.5976 0.6734 21 14 2.9652 -3.6346 0.8769 22 1 -0.3633 0.0004 -1.0277 23 1 -0.3634 -0.8902 0.5134 24 1 -0.3633 0.8897 0.5141 25 1 1.8767 2.1241 -0.0004 26 1 3.6862 3.3202 -0.0728 27 1 5.5057 3.4772 -2.4894 28 1 7.0917 3.0869 -2.8832 29 1 7.3609 4.1905 1.5709 30 1 6.0843 3.0401 2.1588 31 1 4.0242 4.5574 3.1931 32 1 4.4260 5.5567 -0.2043 33 1 6.1922 5.9651 -0.0932 34 1 4.3981 -1.4017 -0.0135 35 1 1.6177 -2.8817 -1.0284 36 1 0.5147 -2.3068 1.5950 37 1 2.4791 -5.0378 0.8830 38 1 4.2871 -3.5585 0.2043 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13287730.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:03 Heat of formation + Delta-G solvation = -69.863655 kcal Electronic energy + Delta-G solvation = -24797.733126 eV Core-core repulsion = 21029.832593 eV Total energy + Delta-G solvation = -3767.900533 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.55984 -41.98167 -39.66352 -39.11637 -37.80310 -36.03190 -34.69011 -34.06706 -33.52126 -31.30297 -27.80849 -26.99167 -26.85029 -26.04089 -23.87098 -22.31593 -21.09009 -20.79294 -20.23644 -19.07465 -18.97094 -17.97935 -17.85669 -17.29221 -16.99784 -16.74192 -16.68048 -15.87189 -15.66080 -15.54954 -15.42434 -15.37481 -15.24313 -14.80659 -14.55903 -14.09045 -13.72654 -13.58263 -13.40998 -13.23909 -13.18526 -12.98557 -12.50767 -12.16073 -12.10312 -11.67784 -11.33863 -11.11738 -10.82754 -10.70931 -10.70258 -10.11440 -9.58522 -9.22834 -5.02008 0.71547 1.00720 1.36850 1.41568 1.60802 1.87598 2.00054 2.16642 2.43042 2.58703 3.04364 3.28826 3.33227 3.50569 3.55139 3.73918 3.84856 3.94913 4.01513 4.29120 4.39064 4.42652 4.47319 4.53653 4.62865 4.73305 4.81343 4.85360 4.90099 4.92196 4.96474 5.01624 5.40141 5.60257 5.78824 5.95612 6.24436 6.34304 6.57751 6.59621 6.87159 7.23570 7.29454 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.419 5.419 3 C 0.083 3.917 4 C -0.258 4.258 5 C 0.589 3.411 6 O -0.587 6.587 7 N -0.678 5.678 8 C 0.129 3.871 9 C 0.528 3.472 10 N -0.836 5.836 11 O -0.586 6.586 12 C -0.166 4.166 13 C 0.099 3.901 14 H 0.098 0.902 15 O -0.553 6.553 16 C -0.109 4.109 17 C -0.169 4.169 18 C -0.013 4.013 19 C -0.031 4.031 20 O -0.543 6.543 21 Si 0.782 3.218 22 H 0.075 0.925 23 H 0.118 0.882 24 H 0.109 0.891 25 H 0.211 0.789 26 H 0.421 0.579 27 H 0.413 0.587 28 H 0.403 0.597 29 H 0.092 0.908 30 H 0.063 0.937 31 H 0.400 0.600 32 H 0.117 0.883 33 H 0.120 0.880 34 H 0.126 0.874 35 H 0.116 0.884 36 H 0.398 0.602 37 H -0.283 1.283 38 H -0.303 1.303 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.360 5.484 2.343 12.830 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 N -0.092 5.092 3 C -0.055 4.055 4 C -0.268 4.268 5 C 0.380 3.620 6 O -0.467 6.467 7 N -0.333 5.333 8 C 0.038 3.962 9 C 0.312 3.688 10 N -0.398 5.398 11 O -0.465 6.465 12 C -0.206 4.206 13 C 0.040 3.960 14 H 0.116 0.884 15 O -0.362 6.362 16 C -0.147 4.147 17 C -0.193 4.193 18 C -0.123 4.123 19 C -0.142 4.142 20 O -0.351 6.351 21 Si 0.688 3.312 22 H 0.094 0.906 23 H 0.136 0.864 24 H 0.127 0.873 25 H 0.228 0.772 26 H 0.261 0.739 27 H 0.243 0.757 28 H 0.234 0.766 29 H 0.110 0.890 30 H 0.082 0.918 31 H 0.250 0.750 32 H 0.135 0.865 33 H 0.138 0.862 34 H 0.144 0.856 35 H 0.133 0.867 36 H 0.249 0.751 37 H -0.210 1.210 38 H -0.231 1.231 Dipole moment (debyes) X Y Z Total from point charges -10.124 4.236 1.478 11.073 hybrid contribution 0.233 -0.146 -0.674 0.728 sum -9.891 4.090 0.804 10.733 Atomic orbital electron populations 1.22812 0.74101 1.07672 1.04886 1.43722 1.08171 1.04216 1.53102 1.22421 0.88651 0.93327 1.01069 1.20133 0.92188 0.93267 1.21224 1.17777 0.87949 0.81937 0.74332 1.90833 1.27856 1.75940 1.52079 1.45159 1.09007 1.03893 1.75265 1.21467 0.86316 0.94091 0.94322 1.20840 0.89244 0.74273 0.84412 1.43663 1.15256 1.71688 1.09200 1.90705 1.21400 1.52573 1.81849 1.24003 1.01231 1.00958 0.94381 1.22524 0.83599 0.94573 0.95351 0.88438 1.86321 1.28976 1.90976 1.29884 1.23359 1.05349 0.90224 0.95756 1.21682 0.95417 0.93895 1.08304 1.20694 0.89953 0.90039 1.11605 1.24607 0.93560 0.94033 1.01990 1.86429 1.28889 1.89153 1.30641 0.93275 0.73463 0.75593 0.88913 0.90643 0.86405 0.87297 0.77201 0.73921 0.75674 0.76624 0.88950 0.91843 0.74982 0.86504 0.86165 0.85596 0.86697 0.75098 1.20974 1.23094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 -0.47 10.71 127.77 1.37 0.89 16 2 N -0.42 1.86 3.09 -533.24 -1.65 0.21 16 3 C 0.08 -0.37 10.83 83.91 0.91 0.54 16 4 C -0.26 -1.08 6.29 -19.04 -0.12 -1.20 16 5 C 0.59 4.84 7.57 86.62 0.66 5.50 16 6 O -0.59 -11.47 15.80 -4.11 -0.06 -11.54 16 7 N -0.68 0.12 4.57 -427.02 -1.95 -1.84 16 8 C 0.13 0.35 0.96 3.45 0.00 0.36 16 9 C 0.53 5.23 5.73 87.66 0.50 5.73 16 10 N -0.84 -2.40 8.82 -173.53 -1.53 -3.93 16 11 O -0.59 -11.80 16.73 -3.04 -0.05 -11.85 16 12 C -0.17 -0.71 7.01 31.18 0.22 -0.49 16 13 C 0.10 -0.44 5.28 31.12 0.16 -0.28 16 14 H 0.10 -0.74 8.14 -2.39 -0.02 -0.76 16 15 O -0.55 3.54 13.08 -148.98 -1.95 1.59 16 16 C -0.11 0.55 7.16 31.12 0.22 0.78 16 17 C -0.17 -1.08 9.50 23.62 0.22 -0.86 16 18 C -0.01 0.00 6.13 40.98 0.25 0.25 16 19 C -0.03 0.07 2.98 71.23 0.21 0.28 16 20 O -0.54 3.16 9.95 -148.98 -1.48 1.68 16 21 Si 0.78 -0.34 31.31 68.60 2.15 1.80 16 22 H 0.07 -0.76 8.14 -2.39 -0.02 -0.78 16 23 H 0.12 -1.30 4.94 -2.39 -0.01 -1.31 16 24 H 0.11 -1.67 8.13 -2.39 -0.02 -1.69 16 25 H 0.21 -2.76 7.46 -2.91 -0.02 -2.78 16 26 H 0.42 -3.05 7.57 -92.71 -0.70 -3.75 16 27 H 0.41 -1.53 8.75 -92.70 -0.81 -2.34 16 28 H 0.40 1.06 8.93 -92.71 -0.83 0.23 16 29 H 0.09 0.73 7.40 -2.39 -0.02 0.71 16 30 H 0.06 0.51 8.14 -2.39 -0.02 0.49 16 31 H 0.40 -4.85 9.12 -74.06 -0.68 -5.53 16 32 H 0.12 -1.14 8.10 -2.39 -0.02 -1.16 16 33 H 0.12 -0.70 8.09 -2.39 -0.02 -0.71 16 34 H 0.13 1.33 6.68 -2.91 -0.02 1.31 16 35 H 0.12 -0.15 7.96 -2.39 -0.02 -0.17 16 36 H 0.40 -5.28 8.38 -74.06 -0.62 -5.90 16 37 H -0.28 -1.34 7.11 99.48 0.71 -0.63 16 38 H -0.30 -2.47 6.77 99.48 0.67 -1.80 16 Total: 0.00 -34.56 323.31 -4.38 -38.93 By element: Atomic # 1 Polarization: -24.10 SS G_CDS: -2.46 Total: -26.56 kcal Atomic # 6 Polarization: 6.88 SS G_CDS: 4.61 Total: 11.49 kcal Atomic # 7 Polarization: -0.43 SS G_CDS: -5.13 Total: -5.56 kcal Atomic # 8 Polarization: -16.57 SS G_CDS: -3.55 Total: -20.12 kcal Atomic # 14 Polarization: -0.34 SS G_CDS: 2.15 Total: 1.80 kcal Total: -34.56 -4.38 -38.93 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13287730.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.929 kcal (2) G-P(sol) polarization free energy of solvation -34.556 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.485 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds