Wall clock time and date at job start Sun Mar 7 2021 04:59:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38979 * 119.95196 * 2 1 4 4 O 1.35706 * 119.91524 * 0.02562 * 3 2 1 5 5 C 1.39027 * 120.17314 * 180.27474 * 3 2 1 6 6 C 1.50699 * 119.95344 * 179.72347 * 5 3 2 7 7 O 1.42897 * 109.47060 * 74.72921 * 6 5 3 8 8 Si 1.86302 * 109.46725 * 194.72525 * 6 5 3 9 9 C 1.37681 * 120.08781 * 359.44970 * 5 3 2 10 10 C 1.39758 * 119.90745 * 0.27255 * 9 5 3 11 11 C 1.47604 * 120.08271 * 180.02562 * 10 9 5 12 12 O 1.21589 * 119.99874 * 0.02562 * 11 10 9 13 13 N 1.34778 * 120.00049 * 180.02562 * 11 10 9 14 14 C 1.46496 * 120.00073 * 175.06152 * 13 11 10 15 15 C 1.50696 * 112.85261 * 67.33157 * 14 13 11 16 16 N 1.34780 * 119.99667 * 36.12364 * 15 14 13 17 17 O 1.21279 * 119.99988 * 216.12220 * 15 14 13 18 18 C 1.53783 * 113.61100 * 296.13653 * 14 13 11 19 19 C 1.53781 * 87.08262 * 270.88625 * 18 14 13 20 20 H 1.09004 * 113.61243 * 219.93781 * 19 18 14 21 21 O 1.42900 * 113.61685 * 89.11812 * 19 18 14 22 22 C 1.53777 * 113.61263 * 198.64143 * 14 13 11 23 23 C 1.37720 * 119.96123 * 179.72301 * 2 1 3 24 24 H 1.08999 * 109.46970 * 270.27221 * 1 2 3 25 25 H 1.08999 * 109.47122 * 30.27657 * 1 2 3 26 26 H 1.08999 * 109.46569 * 150.27153 * 1 2 3 27 27 H 0.96704 * 114.00086 * 270.24931 * 4 3 2 28 28 H 1.08997 * 109.47279 * 314.72667 * 6 5 3 29 29 H 0.96707 * 113.99945 * 180.02562 * 7 6 5 30 30 H 1.48496 * 110.00089 * 299.99731 * 8 6 5 31 31 H 1.48499 * 109.99855 * 61.32171 * 8 6 5 32 32 H 1.07996 * 120.04133 * 180.25225 * 9 5 3 33 33 H 0.97006 * 119.99515 * 355.05667 * 13 11 10 34 34 H 0.96993 * 120.00238 * 355.00620 * 16 15 14 35 35 H 0.97000 * 119.99731 * 175.00489 * 16 15 14 36 36 H 1.08995 * 113.61784 * 25.43285 * 18 14 13 37 37 H 1.09005 * 113.61409 * 156.34099 * 18 14 13 38 38 H 0.96697 * 114.00417 * 180.02562 * 21 19 18 39 39 H 1.08998 * 113.61463 * 203.65732 * 22 14 13 40 40 H 1.09000 * 113.61558 * 334.56501 * 22 14 13 41 41 H 1.08009 * 120.03662 * 359.97438 * 23 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2009 1.2042 0.0000 4 8 1.5197 2.3778 0.0005 5 6 3.5912 1.2095 -0.0058 6 6 4.3385 2.5181 -0.0120 7 8 4.2720 3.1109 1.2865 8 14 6.1198 2.2137 -0.4651 9 6 4.2860 0.0210 -0.0001 10 6 3.5918 -1.1920 0.0058 11 6 4.3329 -2.4685 0.0125 12 8 5.5488 -2.4656 0.0134 13 7 3.6618 -3.6373 0.0176 14 6 4.3932 -4.9025 -0.0850 15 6 5.2422 -5.1876 1.1270 16 7 4.8062 -4.8360 2.3529 17 8 6.3176 -5.7334 0.9993 18 6 5.1432 -5.0741 -1.4165 19 6 3.8570 -5.7115 -1.9683 20 1 4.0378 -6.5715 -2.6132 21 8 2.9513 -4.7675 -2.5432 22 6 3.5150 -6.0885 -0.5171 23 6 2.1948 -1.1931 0.0058 24 1 -0.3633 0.0049 1.0277 25 1 -0.3633 0.8875 -0.5181 26 1 -0.3632 -0.8924 -0.5096 27 1 1.3185 2.7163 -0.8827 28 1 3.8877 3.1905 -0.7419 29 1 4.7326 3.9584 1.3561 30 1 6.7458 1.2984 0.5225 31 1 6.2043 1.6267 -1.8266 32 1 5.3660 0.0260 -0.0004 33 1 2.6944 -3.6408 0.0893 34 1 3.9810 -4.3355 2.4491 35 1 5.3177 -5.0836 3.1390 36 1 5.4032 -4.1305 -1.8961 37 1 5.9833 -5.7663 -1.3585 38 1 2.1403 -5.1623 -2.8916 39 1 3.9100 -7.0578 -0.2132 40 1 2.4606 -5.9637 -0.2705 41 1 1.6547 -2.1285 0.0107 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13287732.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:06 Heat of formation + Delta-G solvation = -142.348693 kcal Electronic energy + Delta-G solvation = -28510.809782 eV Core-core repulsion = 24358.283640 eV Total energy + Delta-G solvation = -4152.526142 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -42.50554 -41.47177 -40.07135 -39.26627 -37.80007 -37.59430 -36.26946 -34.89913 -34.34068 -33.99205 -31.76092 -28.08312 -27.43285 -27.09022 -26.73669 -24.87462 -22.48725 -22.08660 -21.71104 -20.53274 -19.62604 -19.23150 -18.91964 -18.48386 -18.14925 -18.03649 -17.47238 -16.76990 -16.67433 -16.26353 -16.13138 -16.04101 -15.64725 -15.39929 -15.16544 -14.96786 -14.87099 -14.30497 -14.01548 -13.94817 -13.77929 -13.58752 -13.44019 -13.31831 -13.01713 -12.90758 -12.68732 -12.46428 -12.23543 -12.00614 -11.55294 -11.51963 -11.24519 -11.10646 -10.87123 -10.37652 -10.28377 -10.08751 -9.77672 -5.12952 -0.54197 -0.07632 1.17170 1.24582 1.39366 1.49692 1.73856 1.88558 2.32569 2.45178 2.95496 2.99655 3.19221 3.25250 3.32475 3.40468 3.51416 3.59675 3.77356 3.83346 3.87940 4.04676 4.24267 4.28017 4.36034 4.50925 4.54799 4.63071 4.65484 4.70918 4.76809 4.81404 4.82094 4.91143 4.96006 5.14029 5.17847 5.23471 5.51658 5.67517 6.15455 6.25408 6.68687 6.85619 6.89396 6.89732 7.09252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.115 4.115 3 C 0.164 3.836 4 O -0.487 6.487 5 C -0.127 4.127 6 C -0.055 4.055 7 O -0.558 6.558 8 Si 0.759 3.241 9 C -0.083 4.083 10 C -0.151 4.151 11 C 0.562 3.438 12 O -0.575 6.575 13 N -0.672 5.672 14 C 0.126 3.874 15 C 0.523 3.477 16 N -0.835 5.835 17 O -0.582 6.582 18 C -0.135 4.135 19 C 0.098 3.902 20 H 0.100 0.900 21 O -0.559 6.559 22 C -0.133 4.133 23 C -0.047 4.047 24 H 0.078 0.922 25 H 0.078 0.922 26 H 0.092 0.908 27 H 0.413 0.587 28 H 0.104 0.896 29 H 0.403 0.597 30 H -0.311 1.311 31 H -0.294 1.294 32 H 0.107 0.893 33 H 0.424 0.576 34 H 0.412 0.588 35 H 0.406 0.594 36 H 0.054 0.946 37 H 0.104 0.896 38 H 0.403 0.597 39 H 0.116 0.884 40 H 0.126 0.874 41 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.712 1.504 -2.369 12.044 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.116 4.116 3 C 0.118 3.882 4 O -0.301 6.301 5 C -0.128 4.128 6 C -0.166 4.166 7 O -0.368 6.368 8 Si 0.668 3.332 9 C -0.102 4.102 10 C -0.155 4.155 11 C 0.351 3.649 12 O -0.455 6.455 13 N -0.328 5.328 14 C 0.035 3.965 15 C 0.306 3.694 16 N -0.397 5.397 17 O -0.461 6.461 18 C -0.174 4.174 19 C 0.038 3.962 20 H 0.117 0.883 21 O -0.368 6.368 22 C -0.171 4.171 23 C -0.066 4.066 24 H 0.097 0.903 25 H 0.097 0.903 26 H 0.111 0.889 27 H 0.274 0.726 28 H 0.122 0.878 29 H 0.254 0.746 30 H -0.240 1.240 31 H -0.222 1.222 32 H 0.124 0.876 33 H 0.265 0.735 34 H 0.243 0.757 35 H 0.238 0.762 36 H 0.073 0.927 37 H 0.122 0.878 38 H 0.254 0.746 39 H 0.135 0.865 40 H 0.144 0.856 41 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -9.495 0.414 -1.981 9.708 hybrid contribution -0.443 -0.275 -0.044 0.523 sum -9.938 0.140 -2.026 10.144 Atomic orbital electron populations 1.20774 0.87225 1.04698 1.03652 1.20554 0.98853 0.91355 1.00838 1.18400 0.88063 0.86454 0.95295 1.84765 1.75045 1.35191 1.35101 1.19899 0.94295 0.94025 1.04561 1.24393 1.08619 0.93644 0.89920 1.86480 1.79704 1.41869 1.28703 0.94857 0.76967 0.85857 0.75512 1.20943 0.99108 0.92369 0.97755 1.19704 0.94917 0.91724 1.09106 1.18452 0.86711 0.84615 0.75146 1.90848 1.15730 1.88028 1.50886 1.45167 1.11021 1.02423 1.74157 1.21544 0.95299 0.87295 0.92318 1.20919 0.85607 0.76845 0.85996 1.43693 1.29504 1.58759 1.07785 1.90728 1.23099 1.45524 1.86719 1.23356 0.98240 1.02188 0.93578 1.22520 0.88985 0.91595 0.93087 0.88269 1.86482 1.34343 1.36363 1.79564 1.23913 1.01463 0.95381 0.96358 1.21402 0.90765 0.99641 0.94744 0.90300 0.90312 0.88896 0.72557 0.87783 0.74587 1.23995 1.22152 0.87561 0.73474 0.75727 0.76227 0.92716 0.87781 0.74560 0.86546 0.85611 0.80964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 0.82 9.78 71.24 0.70 1.52 16 2 C -0.12 0.21 5.89 -19.81 -0.12 0.09 16 3 C 0.16 0.33 6.66 22.64 0.15 0.48 16 4 O -0.49 0.73 11.85 -90.27 -1.07 -0.34 16 5 C -0.13 -0.81 5.30 -19.81 -0.11 -0.92 16 6 C -0.05 -0.11 2.36 71.24 0.17 0.06 16 7 O -0.56 -1.55 12.86 -148.98 -1.92 -3.47 16 8 Si 0.76 3.02 30.19 68.60 2.07 5.09 16 9 C -0.08 -0.91 8.20 22.51 0.18 -0.72 16 10 C -0.15 -0.98 5.87 -20.08 -0.12 -1.09 16 11 C 0.56 5.20 7.24 86.72 0.63 5.82 16 12 O -0.58 -11.64 15.05 -3.99 -0.06 -11.70 16 13 N -0.67 0.04 4.02 -426.99 -1.72 -1.68 16 14 C 0.13 0.35 0.96 3.38 0.00 0.36 16 15 C 0.52 4.71 6.61 87.66 0.58 5.29 16 16 N -0.83 -1.58 8.83 -173.53 -1.53 -3.11 16 17 O -0.58 -10.86 16.74 -3.03 -0.05 -10.91 16 18 C -0.13 -0.92 6.66 31.12 0.21 -0.72 16 19 C 0.10 -0.34 5.28 31.12 0.16 -0.17 16 20 H 0.10 -0.66 8.14 -2.39 -0.02 -0.68 16 21 O -0.56 2.64 13.09 -148.98 -1.95 0.69 16 22 C -0.13 0.84 7.20 31.12 0.22 1.07 16 23 C -0.05 0.10 9.17 22.50 0.21 0.31 16 24 H 0.08 -0.57 8.14 -2.39 -0.02 -0.58 16 25 H 0.08 -0.66 7.53 -2.39 -0.02 -0.68 16 26 H 0.09 -1.09 8.08 -2.39 -0.02 -1.11 16 27 H 0.41 -4.67 9.06 -74.05 -0.67 -5.34 16 28 H 0.10 -0.45 7.83 -2.39 -0.02 -0.47 16 29 H 0.40 -3.20 8.74 -74.05 -0.65 -3.84 16 30 H -0.31 -4.57 6.75 99.48 0.67 -3.89 16 31 H -0.29 -3.06 7.11 99.48 0.71 -2.36 16 32 H 0.11 1.76 4.47 -2.91 -0.01 1.74 16 33 H 0.42 -3.63 6.71 -92.70 -0.62 -4.25 16 34 H 0.41 -1.61 8.33 -92.71 -0.77 -2.38 16 35 H 0.41 0.34 8.93 -92.71 -0.83 -0.49 16 36 H 0.05 0.74 7.38 -2.39 -0.02 0.73 16 37 H 0.10 0.98 7.35 -2.38 -0.02 0.97 16 38 H 0.40 -5.85 9.12 -74.06 -0.68 -6.53 16 39 H 0.12 -0.74 8.10 -2.39 -0.02 -0.76 16 40 H 0.13 -1.67 8.10 -2.39 -0.02 -1.69 16 41 H 0.17 -1.88 6.41 -2.91 -0.02 -1.90 16 Total: 0.00 -41.19 346.08 -6.39 -47.58 By element: Atomic # 1 Polarization: -30.47 SS G_CDS: -3.04 Total: -33.51 kcal Atomic # 6 Polarization: 8.50 SS G_CDS: 2.87 Total: 11.37 kcal Atomic # 7 Polarization: -1.54 SS G_CDS: -3.25 Total: -4.79 kcal Atomic # 8 Polarization: -20.69 SS G_CDS: -5.05 Total: -25.74 kcal Atomic # 14 Polarization: 3.02 SS G_CDS: 2.07 Total: 5.09 kcal Total: -41.19 -6.39 -47.58 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13287732.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.772 kcal (2) G-P(sol) polarization free energy of solvation -41.187 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -135.959 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.576 kcal (6) G-S(sol) free energy of system = (1) + (5) -142.349 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds