Wall clock time and date at job start Sun Mar 7 2021 04:59:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.36408 * 125.80256 * 2 1 4 4 C 1.47378 * 127.19298 * 0.02562 * 3 2 1 5 5 O 1.21609 * 119.99857 * 359.70391 * 4 3 2 6 6 N 1.34774 * 120.00111 * 179.70821 * 4 3 2 7 7 C 1.46497 * 120.00204 * 174.85040 * 6 4 3 8 8 C 1.50694 * 112.85131 * 57.80621 * 7 6 4 9 9 N 1.34782 * 119.99960 * 35.43893 * 8 7 6 10 10 O 1.21283 * 120.00678 * 215.44127 * 8 7 6 11 11 C 1.53784 * 113.61425 * 286.61494 * 7 6 4 12 12 C 1.54058 * 86.98526 * 219.97779 * 11 7 6 13 13 H 1.08991 * 113.60925 * 270.88108 * 12 11 7 14 14 O 1.42903 * 113.69134 * 139.98700 * 12 11 7 15 15 C 1.53781 * 87.07420 * 25.43289 * 12 11 7 16 16 C 1.47026 * 105.61586 * 179.75373 * 3 2 1 17 17 C 1.34174 * 105.95339 * 0.22588 * 16 3 2 18 18 C 1.50703 * 125.43812 * 180.02562 * 17 16 3 19 19 O 1.42898 * 109.46979 * 299.99666 * 18 17 16 20 20 Si 1.86300 * 109.47177 * 180.02562 * 18 17 16 21 21 O 1.33662 * 125.80130 * 180.14209 * 2 1 3 22 22 H 1.09002 * 109.47479 * 90.00274 * 1 2 3 23 23 H 1.09004 * 109.47478 * 209.99778 * 1 2 3 24 24 H 1.08998 * 109.47500 * 330.00029 * 1 2 3 25 25 H 0.97004 * 120.00394 * 354.85515 * 6 4 3 26 26 H 0.96993 * 120.00551 * 174.98721 * 9 8 7 27 27 H 0.97008 * 119.99495 * 354.72220 * 9 8 7 28 28 H 1.09007 * 113.61626 * 334.47711 * 11 7 6 29 29 H 1.08996 * 113.61901 * 105.38199 * 11 7 6 30 30 H 0.96702 * 113.99592 * 82.47453 * 14 12 11 31 31 H 1.09008 * 113.60841 * 220.02402 * 15 12 11 32 32 H 1.08997 * 113.69505 * 89.13195 * 15 12 11 33 33 H 1.08005 * 127.02379 * 180.24546 * 16 3 2 34 34 H 1.08989 * 109.47540 * 59.99705 * 18 17 16 35 35 H 0.96703 * 114.00559 * 179.97438 * 19 18 17 36 36 H 1.48497 * 110.00382 * 59.99349 * 20 18 17 37 37 H 1.48500 * 110.00028 * 181.31638 * 20 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3049 1.1063 0.0000 4 6 1.8739 2.5157 0.0005 5 8 0.6890 2.7891 -0.0044 6 7 2.7930 3.5014 0.0064 7 6 2.3688 4.8991 -0.1069 8 6 1.4107 5.3099 0.9812 9 7 1.5477 4.8081 2.2246 10 8 0.5163 6.0922 0.7382 11 6 1.9006 5.2881 -1.5191 12 6 2.6337 6.6262 -1.3054 13 1 2.0130 7.3954 -0.8459 14 8 3.3280 7.0921 -2.4642 15 6 3.5344 5.8825 -0.3051 16 6 3.6849 0.5990 0.0061 17 6 3.5858 -0.7391 0.0040 18 6 4.7458 -1.7012 0.0090 19 8 5.5486 -1.4854 -1.1533 20 14 4.1026 -3.4496 0.0028 21 8 2.2888 -1.0841 -0.0027 22 1 -0.3634 0.0000 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5138 25 1 3.7354 3.2855 0.0856 26 1 0.9777 5.1267 2.9418 27 1 2.2138 4.1254 2.4013 28 1 2.3347 4.6737 -2.3079 29 1 0.8191 5.3905 -1.6079 30 1 2.7666 7.5607 -3.0971 31 1 3.7710 6.4644 0.5857 32 1 4.4149 5.4298 -0.7612 33 1 4.5928 1.1839 0.0115 34 1 5.3488 -1.5387 0.9023 35 1 6.3156 -2.0710 -1.2159 36 1 3.2790 -3.6836 -1.2105 37 1 5.2363 -4.4080 0.0398 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13308374.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:16 Heat of formation + Delta-G solvation = -108.187920 kcal Electronic energy + Delta-G solvation = -24728.691735 eV Core-core repulsion = 20861.410675 eV Total energy + Delta-G solvation = -3867.281060 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 297.114 amu Computer time = 0.69 seconds Orbital eigenvalues (eV) -43.79085 -42.28314 -39.99889 -39.00004 -38.06907 -36.47465 -34.86525 -34.47475 -33.64387 -33.10118 -29.52346 -27.11713 -26.98172 -25.56180 -24.22187 -23.05100 -22.07465 -20.83551 -20.36801 -19.09637 -18.85609 -18.46520 -18.33730 -17.80588 -17.34667 -17.08390 -16.79469 -16.12017 -15.91972 -15.78211 -15.72811 -15.46981 -15.01678 -14.79794 -14.27399 -14.15503 -14.01544 -13.85808 -13.71434 -13.55259 -13.39190 -13.13692 -12.65786 -12.53887 -12.16460 -11.94191 -11.45362 -11.28076 -10.96969 -10.91332 -10.78462 -10.63421 -10.28849 -9.58160 -4.94848 0.17931 0.79434 1.17872 1.27747 1.37754 1.67100 1.87586 1.95707 2.12059 2.35292 3.14772 3.18042 3.22550 3.34546 3.51703 3.61990 3.66341 3.72397 3.83977 4.10325 4.13096 4.30220 4.47454 4.52886 4.55706 4.60464 4.64084 4.73430 4.76575 4.81708 4.90132 5.10870 5.20861 5.22703 5.74814 5.89546 6.23582 6.36202 6.52776 6.75381 7.02818 7.15410 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.087 3.913 3 C -0.265 4.265 4 C 0.593 3.407 5 O -0.557 6.557 6 N -0.694 5.694 7 C 0.132 3.868 8 C 0.540 3.460 9 N -0.829 5.829 10 O -0.575 6.575 11 C -0.155 4.155 12 C 0.084 3.916 13 H 0.087 0.913 14 O -0.567 6.567 15 C -0.102 4.102 16 C -0.142 4.142 17 C -0.024 4.024 18 C -0.034 4.034 19 O -0.553 6.553 20 Si 0.758 3.242 21 O -0.175 6.175 22 H 0.092 0.908 23 H 0.102 0.898 24 H 0.099 0.901 25 H 0.423 0.577 26 H 0.410 0.590 27 H 0.412 0.588 28 H 0.102 0.898 29 H 0.061 0.939 30 H 0.398 0.602 31 H 0.103 0.897 32 H 0.129 0.871 33 H 0.184 0.816 34 H 0.135 0.865 35 H 0.407 0.593 36 H -0.315 1.315 37 H -0.264 1.264 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.645 -3.638 4.810 8.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.034 3.966 3 C -0.269 4.269 4 C 0.382 3.618 5 O -0.437 6.437 6 N -0.350 5.350 7 C 0.042 3.958 8 C 0.324 3.676 9 N -0.392 5.392 10 O -0.454 6.454 11 C -0.194 4.194 12 C 0.024 3.976 13 H 0.105 0.895 14 O -0.375 6.375 15 C -0.140 4.140 16 C -0.161 4.161 17 C -0.071 4.071 18 C -0.143 4.143 19 O -0.365 6.365 20 Si 0.663 3.337 21 O -0.072 6.072 22 H 0.110 0.890 23 H 0.120 0.880 24 H 0.117 0.883 25 H 0.262 0.738 26 H 0.241 0.759 27 H 0.242 0.758 28 H 0.120 0.880 29 H 0.080 0.920 30 H 0.248 0.752 31 H 0.121 0.879 32 H 0.147 0.853 33 H 0.201 0.799 34 H 0.152 0.848 35 H 0.259 0.741 36 H -0.244 1.244 37 H -0.189 1.189 Dipole moment (debyes) X Y Z Total from point charges 5.296 -3.835 4.266 7.807 hybrid contribution 0.679 0.123 -0.774 1.037 sum 5.974 -3.712 3.492 7.853 Atomic orbital electron populations 1.20704 0.82732 1.05810 1.04903 1.23191 0.94656 0.83003 0.95777 1.21054 0.94255 0.92922 1.18702 1.17399 0.85145 0.84286 0.74945 1.90836 1.17849 1.84200 1.50799 1.45525 1.10955 1.03196 1.75292 1.21402 0.97200 0.82638 0.94570 1.20115 0.83725 0.79612 0.84198 1.43566 1.41675 1.43936 1.10044 1.90742 1.34300 1.37855 1.82469 1.23976 1.01587 0.98789 0.95086 1.23128 0.93534 0.93451 0.87488 0.89537 1.86430 1.40281 1.77654 1.33115 1.23315 0.96072 0.94682 0.99883 1.22797 0.96390 0.93392 1.03489 1.21484 0.82163 0.95052 1.08404 1.23899 0.90659 1.07382 0.92366 1.86505 1.43162 1.63205 1.43650 0.93749 0.80627 0.72635 0.86711 1.83666 1.16829 1.35175 1.71549 0.88998 0.87951 0.88259 0.73754 0.75859 0.75751 0.87993 0.91977 0.75188 0.87886 0.85286 0.79858 0.84771 0.74084 1.24357 1.18899 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.05 9.89 71.23 0.70 0.65 16 2 C 0.09 0.29 7.37 25.26 0.19 0.47 16 3 C -0.26 -0.66 6.31 -18.99 -0.12 -0.78 16 4 C 0.59 2.38 7.47 86.65 0.65 3.03 16 5 O -0.56 -6.30 13.80 -4.06 -0.06 -6.35 16 6 N -0.69 1.49 4.69 -427.21 -2.00 -0.51 16 7 C 0.13 0.18 1.10 3.38 0.00 0.18 16 8 C 0.54 3.40 5.82 87.65 0.51 3.91 16 9 N -0.83 0.54 8.77 -173.53 -1.52 -0.98 16 10 O -0.58 -8.73 16.19 -3.04 -0.05 -8.77 16 11 C -0.16 -0.73 6.90 31.22 0.22 -0.52 16 12 C 0.08 0.16 4.83 31.22 0.15 0.32 16 13 H 0.09 0.34 7.60 -2.39 -0.02 0.33 16 14 O -0.57 -0.92 13.68 -148.98 -2.04 -2.96 16 15 C -0.10 0.29 7.19 31.12 0.22 0.52 16 16 C -0.14 0.21 10.46 23.65 0.25 0.46 16 17 C -0.02 0.00 6.24 24.76 0.15 0.15 16 18 C -0.03 0.17 2.97 71.24 0.21 0.38 16 19 O -0.55 1.62 12.84 -148.98 -1.91 -0.30 16 20 Si 0.76 -2.53 32.08 68.60 2.20 -0.33 16 21 O -0.17 -0.50 8.89 4.43 0.04 -0.46 16 22 H 0.09 0.05 8.14 -2.39 -0.02 0.03 16 23 H 0.10 -0.38 8.14 -2.38 -0.02 -0.40 16 24 H 0.10 0.33 6.49 -2.39 -0.02 0.32 16 25 H 0.42 -3.66 7.85 -92.70 -0.73 -4.39 16 26 H 0.41 -0.82 8.93 -92.71 -0.83 -1.65 16 27 H 0.41 -2.35 8.31 -92.70 -0.77 -3.12 16 28 H 0.10 0.41 8.14 -2.38 -0.02 0.39 16 29 H 0.06 0.66 7.65 -2.39 -0.02 0.64 16 30 H 0.40 -2.05 9.12 -74.06 -0.68 -2.72 16 31 H 0.10 -0.54 8.09 -2.38 -0.02 -0.56 16 32 H 0.13 -0.80 8.14 -2.39 -0.02 -0.82 16 33 H 0.18 -1.39 7.75 -2.91 -0.02 -1.41 16 34 H 0.13 -1.60 7.96 -2.39 -0.02 -1.62 16 35 H 0.41 -4.71 8.74 -74.06 -0.65 -5.35 16 36 H -0.32 -2.34 7.11 99.48 0.71 -1.63 16 37 H -0.26 0.39 7.11 99.48 0.71 1.10 16 Total: 0.00 -28.14 322.76 -4.63 -32.77 By element: Atomic # 1 Polarization: -18.46 SS G_CDS: -2.43 Total: -20.88 kcal Atomic # 6 Polarization: 5.64 SS G_CDS: 3.13 Total: 8.77 kcal Atomic # 7 Polarization: 2.04 SS G_CDS: -3.52 Total: -1.49 kcal Atomic # 8 Polarization: -14.82 SS G_CDS: -4.02 Total: -18.84 kcal Atomic # 14 Polarization: -2.53 SS G_CDS: 2.20 Total: -0.33 kcal Total: -28.14 -4.63 -32.77 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13308374.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.418 kcal (2) G-P(sol) polarization free energy of solvation -28.139 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.557 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.770 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.69 seconds