Wall clock time and date at job start Sun Mar 7 2021 04:59:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34777 * 1 3 3 O 1.21281 * 120.00219 * 2 1 4 4 C 1.50697 * 119.99438 * 180.28023 * 2 1 3 5 5 N 1.46502 * 112.85016 * 312.67798 * 4 2 1 6 6 C 1.34776 * 120.00047 * 298.02484 * 5 4 2 7 7 O 1.21592 * 119.99740 * 354.98009 * 6 5 4 8 8 C 1.47556 * 119.99876 * 174.98164 * 6 5 4 9 9 C 1.39834 * 119.99990 * 359.72328 * 8 6 5 10 10 C 1.36569 * 119.99422 * 179.78735 * 9 8 6 11 11 C 1.39815 * 120.00205 * 0.46562 * 10 9 8 12 12 C 1.47561 * 120.00153 * 179.76504 * 11 10 9 13 13 C 1.34977 * 125.27456 * 359.74036 * 12 11 10 14 14 C 1.37798 * 114.70321 * 179.85974 * 13 12 11 15 15 C 1.33739 * 115.08061 * 0.43230 * 14 13 12 16 16 C 1.50699 * 125.12235 * 179.76495 * 15 14 13 17 17 O 1.42901 * 109.47141 * 300.03123 * 16 15 14 18 18 Si 1.86296 * 109.47291 * 180.02562 * 16 15 14 19 19 S 1.75862 * 109.76171 * 359.77157 * 15 14 13 20 20 C 1.39825 * 120.00487 * 359.78861 * 11 10 9 21 21 C 1.36563 * 120.00065 * 359.97438 * 20 11 10 22 22 C 1.53788 * 113.61149 * 181.37156 * 4 2 1 23 23 C 1.53779 * 87.08161 * 220.01587 * 22 4 2 24 24 H 1.09000 * 113.68917 * 139.99116 * 23 22 4 25 25 O 1.42900 * 113.62102 * 270.88532 * 23 22 4 26 26 C 1.53783 * 113.61755 * 83.87702 * 4 2 1 27 27 H 0.96995 * 120.00048 * 184.73973 * 1 2 3 28 28 H 0.97005 * 119.99404 * 4.74278 * 1 2 3 29 29 H 0.97000 * 119.99493 * 118.03348 * 5 4 2 30 30 H 1.07996 * 120.00243 * 0.02852 * 9 8 6 31 31 H 1.08001 * 119.99745 * 180.23551 * 10 9 8 32 32 H 1.08004 * 122.64575 * 0.02562 * 13 12 11 33 33 H 1.08005 * 122.46051 * 180.18016 * 14 13 12 34 34 H 1.09005 * 109.46861 * 60.02252 * 16 15 14 35 35 H 0.96706 * 114.00010 * 299.99584 * 17 16 15 36 36 H 1.48504 * 110.00008 * 180.02562 * 18 16 15 37 37 H 1.48494 * 110.00221 * 301.31974 * 18 16 15 38 38 H 1.08002 * 120.00314 * 179.97438 * 20 11 10 39 39 H 1.08001 * 120.00543 * 180.02562 * 21 20 11 40 40 H 1.08997 * 113.61496 * 334.56928 * 22 4 2 41 41 H 1.09004 * 113.61210 * 105.47213 * 22 4 2 42 42 H 0.96695 * 113.99678 * 277.50176 * 25 23 22 43 43 H 1.08995 * 113.61390 * 254.52765 * 26 4 2 44 44 H 1.09002 * 113.61138 * 25.42734 * 26 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1011 -1.3051 -0.0064 5 7 1.5929 -2.2602 0.9815 6 6 1.6375 -1.9595 2.2945 7 8 2.1814 -0.9374 2.6660 8 6 1.0263 -2.8706 3.2812 9 6 0.3958 -4.0432 2.8534 10 6 -0.1661 -4.8885 3.7671 11 6 -0.1194 -4.5768 5.1292 12 6 -0.7310 -5.4877 6.1160 13 6 -1.3647 -6.6428 5.8226 14 6 -1.8522 -7.3259 6.9155 15 6 -1.6320 -6.7376 8.0962 16 6 -2.0701 -7.2821 9.4314 17 8 -3.4929 -7.4141 9.4483 18 14 -1.5385 -6.1151 10.7827 19 16 -0.7542 -5.2327 7.8562 20 6 0.5065 -3.4017 5.5566 21 6 1.0726 -2.5587 4.6435 22 6 3.6291 -1.1345 0.0282 23 6 3.7027 -2.2954 -0.9777 24 1 4.4504 -2.1521 -1.7578 25 8 3.7828 -3.5824 -0.3620 26 6 2.2790 -1.9070 -1.4103 27 1 -0.4850 -0.8371 0.0694 28 1 -0.4849 0.8373 -0.0695 29 1 1.2245 -3.1090 0.6905 30 1 0.3565 -4.2821 1.8010 31 1 -0.6498 -5.7960 3.4371 32 1 -1.4781 -7.0045 4.8113 33 1 -2.3774 -8.2653 6.8250 34 1 -1.6128 -8.2582 9.5934 35 1 -3.9668 -6.5825 9.3099 36 1 -1.9642 -6.6411 12.1046 37 1 -0.0637 -5.9446 10.7555 38 1 0.5422 -3.1608 6.6088 39 1 1.5564 -1.6512 4.9735 40 1 3.9715 -0.1826 -0.3777 41 1 4.0726 -1.3671 0.9964 42 1 4.6757 -3.8322 -0.0877 43 1 1.6325 -2.7630 -1.6035 44 1 2.2522 -1.1662 -2.2095 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13308390.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:18 Heat of formation + Delta-G solvation = -59.070428 kcal Electronic energy + Delta-G solvation = -30844.746413 eV Core-core repulsion = 26435.223746 eV Total energy + Delta-G solvation = -4409.522668 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 375.102 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.34414 -40.87911 -39.70876 -39.23037 -38.87928 -37.35766 -36.16271 -34.75613 -34.30876 -33.18940 -32.17903 -30.45165 -27.62899 -27.02382 -26.60647 -24.72963 -23.97349 -23.43109 -22.45571 -21.79116 -20.45553 -20.24092 -19.31772 -19.08171 -18.62610 -18.06580 -17.88838 -17.56411 -16.84854 -16.66319 -16.35647 -16.21590 -16.08899 -16.00635 -15.86795 -15.56653 -15.34795 -15.13649 -14.82350 -14.46809 -14.46175 -14.29927 -13.89107 -13.76456 -13.60768 -13.53727 -13.33087 -13.19846 -13.07072 -12.60626 -12.55571 -12.29284 -12.06739 -11.70343 -11.56896 -11.45291 -11.22376 -10.86994 -10.81175 -10.77590 -10.53510 -10.18861 -10.13937 -9.54950 -9.03221 -5.16615 -0.89300 0.24615 0.34168 0.38859 0.76953 1.21969 1.31048 1.51165 1.57774 1.84403 1.91357 1.93825 2.45378 2.81819 3.00083 3.25035 3.38165 3.43787 3.48049 3.63302 3.69449 3.70732 3.76324 3.84549 3.95707 4.19625 4.29484 4.37016 4.37385 4.47192 4.56392 4.60289 4.62612 4.70194 4.79221 4.86537 4.91123 4.92698 5.02106 5.11169 5.22448 5.28334 5.30783 5.32837 5.49125 5.72717 5.76834 6.26807 6.39764 6.66540 6.80343 7.05755 7.19464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.833 5.833 2 C 0.522 3.478 3 O -0.581 6.581 4 C 0.129 3.871 5 N -0.675 5.675 6 C 0.559 3.441 7 O -0.571 6.571 8 C -0.147 4.147 9 C -0.062 4.062 10 C -0.107 4.107 11 C 0.009 3.991 12 C -0.159 4.159 13 C -0.114 4.114 14 C -0.110 4.110 15 C -0.221 4.221 16 C -0.024 4.024 17 O -0.546 6.546 18 Si 0.716 3.284 19 S 0.118 5.882 20 C -0.129 4.129 21 C -0.065 4.065 22 C -0.164 4.164 23 C 0.093 3.907 24 H 0.097 0.903 25 O -0.556 6.556 26 C -0.106 4.106 27 H 0.415 0.585 28 H 0.406 0.594 29 H 0.423 0.577 30 H 0.165 0.835 31 H 0.163 0.837 32 H 0.169 0.831 33 H 0.154 0.846 34 H 0.123 0.877 35 H 0.397 0.603 36 H -0.270 1.270 37 H -0.269 1.269 38 H 0.132 0.868 39 H 0.123 0.877 40 H 0.094 0.906 41 H 0.062 0.938 42 H 0.398 0.602 43 H 0.118 0.882 44 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.647 -6.392 -4.968 9.334 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.305 3.695 3 O -0.459 6.459 4 C 0.038 3.962 5 N -0.331 5.331 6 C 0.348 3.652 7 O -0.450 6.450 8 C -0.151 4.151 9 C -0.080 4.080 10 C -0.126 4.126 11 C 0.007 3.993 12 C -0.276 4.276 13 C -0.145 4.145 14 C -0.140 4.140 15 C -0.338 4.338 16 C -0.137 4.137 17 O -0.354 6.354 18 Si 0.619 3.381 19 S 0.385 5.615 20 C -0.148 4.148 21 C -0.084 4.084 22 C -0.203 4.203 23 C 0.034 3.966 24 H 0.115 0.885 25 O -0.364 6.364 26 C -0.144 4.144 27 H 0.246 0.754 28 H 0.238 0.762 29 H 0.264 0.736 30 H 0.183 0.817 31 H 0.181 0.819 32 H 0.186 0.814 33 H 0.172 0.828 34 H 0.140 0.860 35 H 0.247 0.753 36 H -0.195 1.195 37 H -0.195 1.195 38 H 0.150 0.850 39 H 0.141 0.859 40 H 0.112 0.888 41 H 0.080 0.920 42 H 0.249 0.751 43 H 0.137 0.863 44 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.222 -4.488 -2.986 6.280 hybrid contribution -0.130 -1.375 -0.614 1.511 sum -3.352 -5.864 -3.600 7.653 Atomic orbital electron populations 1.43695 1.06289 1.14049 1.75625 1.20884 0.83548 0.90866 0.74179 1.90735 1.69398 1.34640 1.51127 1.21470 0.94670 0.87050 0.92980 1.45247 1.63174 1.20916 1.03776 1.18580 0.78563 0.85170 0.82910 1.90860 1.45218 1.28570 1.80357 1.19905 1.04438 0.97427 0.93312 1.21262 0.93940 0.91249 1.01591 1.21210 0.99847 1.01031 0.90531 1.18457 0.95560 0.92456 0.92837 1.23157 1.07911 1.00534 0.96018 1.20644 0.98493 0.93584 1.01734 1.20196 1.01190 1.01973 0.90633 1.25153 1.08333 0.99807 1.00544 1.24378 0.85514 1.06305 0.97519 1.86493 1.15337 1.38565 1.95045 0.94196 0.80589 0.85850 0.77435 1.84238 1.55020 1.20951 1.01297 1.21001 0.99317 0.94270 1.00174 1.20903 0.96366 0.99023 0.92080 1.23914 0.93557 1.01324 1.01545 1.22600 0.98181 0.82224 0.93633 0.88528 1.86335 1.36444 1.32613 1.80959 1.23362 0.96964 1.02039 0.92036 0.75436 0.76211 0.73611 0.81727 0.81949 0.81401 0.82812 0.85989 0.75315 1.19497 1.19484 0.85028 0.85869 0.88777 0.91960 0.75133 0.86341 0.85826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 1.15 8.85 -173.53 -1.54 -0.39 16 2 C 0.52 3.48 6.46 87.66 0.57 4.05 16 3 O -0.58 -9.99 16.73 -3.03 -0.05 -10.04 16 4 C 0.13 0.11 0.90 3.39 0.00 0.12 16 5 N -0.68 1.47 4.42 -427.01 -1.89 -0.42 16 6 C 0.56 2.88 7.32 86.70 0.63 3.52 16 7 O -0.57 -8.92 15.05 -4.01 -0.06 -8.98 16 8 C -0.15 -0.20 5.88 -20.05 -0.12 -0.32 16 9 C -0.06 0.35 9.48 22.27 0.21 0.56 16 10 C -0.11 0.57 9.48 22.26 0.21 0.79 16 11 C 0.01 -0.01 5.88 -20.05 -0.12 -0.13 16 12 C -0.16 0.15 6.37 23.98 0.15 0.30 16 13 C -0.11 0.38 9.64 21.42 0.21 0.59 16 14 C -0.11 0.24 10.00 21.14 0.21 0.45 16 15 C -0.22 0.28 5.73 24.66 0.14 0.42 16 16 C -0.02 0.04 2.96 71.24 0.21 0.25 16 17 O -0.55 0.88 12.86 -148.98 -1.92 -1.04 16 18 Si 0.72 -1.07 30.96 68.60 2.12 1.06 16 19 S 0.12 -0.07 19.46 -56.49 -1.10 -1.17 16 20 C -0.13 -0.19 9.54 22.26 0.21 0.02 16 21 C -0.06 -0.26 9.53 22.26 0.21 -0.04 16 22 C -0.16 -0.63 6.62 31.12 0.21 -0.42 16 23 C 0.09 -0.40 5.28 31.12 0.16 -0.24 16 24 H 0.10 -0.70 8.14 -2.39 -0.02 -0.72 16 25 O -0.56 2.83 13.09 -148.98 -1.95 0.88 16 26 C -0.11 0.66 7.18 31.12 0.22 0.89 16 27 H 0.41 -3.26 8.66 -92.71 -0.80 -4.07 16 28 H 0.41 -0.90 8.93 -92.70 -0.83 -1.73 16 29 H 0.42 -3.83 6.67 -92.71 -0.62 -4.45 16 30 H 0.17 -2.17 6.40 -2.91 -0.02 -2.19 16 31 H 0.16 -1.81 6.74 -2.91 -0.02 -1.83 16 32 H 0.17 -1.46 6.88 -2.91 -0.02 -1.48 16 33 H 0.15 -0.61 8.06 -2.91 -0.02 -0.64 16 34 H 0.12 -0.19 7.96 -2.38 -0.02 -0.21 16 35 H 0.40 -3.62 8.70 -74.05 -0.64 -4.27 16 36 H -0.27 -1.21 7.11 99.48 0.71 -0.51 16 37 H -0.27 -0.96 7.11 99.48 0.71 -0.25 16 38 H 0.13 0.02 7.26 -2.91 -0.02 0.00 16 39 H 0.12 0.82 7.64 -2.91 -0.02 0.79 16 40 H 0.09 0.67 7.41 -2.39 -0.02 0.65 16 41 H 0.06 0.54 7.55 -2.38 -0.02 0.52 16 42 H 0.40 -4.12 9.12 -74.06 -0.68 -4.80 16 43 H 0.12 -1.29 8.09 -2.39 -0.02 -1.31 16 44 H 0.12 -0.91 8.09 -2.39 -0.02 -0.93 16 Total: 0.00 -31.27 386.16 -5.44 -36.70 By element: Atomic # 1 Polarization: -25.01 SS G_CDS: -2.39 Total: -27.41 kcal Atomic # 6 Polarization: 7.47 SS G_CDS: 3.33 Total: 10.80 kcal Atomic # 7 Polarization: 2.62 SS G_CDS: -3.42 Total: -0.81 kcal Atomic # 8 Polarization: -15.20 SS G_CDS: -3.98 Total: -19.18 kcal Atomic # 14 Polarization: -1.07 SS G_CDS: 2.12 Total: 1.06 kcal Atomic # 16 Polarization: -0.07 SS G_CDS: -1.10 Total: -1.17 kcal Total: -31.27 -5.44 -36.70 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13308390.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.366 kcal (2) G-P(sol) polarization free energy of solvation -31.268 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.437 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.704 kcal (6) G-S(sol) free energy of system = (1) + (5) -59.070 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds