Wall clock time and date at job start Sun Mar 7 2021 04:59:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.37790 * 119.84614 * 2 1 4 4 C 1.39705 * 119.90179 * 180.23376 * 3 2 1 5 5 C 1.47542 * 120.18693 * 179.78881 * 4 3 2 6 6 O 1.21591 * 120.00105 * 179.71916 * 5 4 3 7 7 N 1.34777 * 120.00161 * 359.72238 * 5 4 3 8 8 C 1.46500 * 120.00110 * 175.22269 * 7 5 4 9 9 C 1.50709 * 112.84745 * 305.60855 * 8 7 5 10 10 N 1.34773 * 120.00165 * 313.97526 * 9 8 7 11 11 O 1.21281 * 119.99657 * 133.97148 * 9 8 7 12 12 C 1.53779 * 113.61495 * 174.41548 * 8 7 5 13 13 C 1.53779 * 87.08277 * 219.93073 * 12 8 7 14 14 H 1.09001 * 113.61639 * 270.88921 * 13 12 8 15 15 O 1.42890 * 113.61528 * 140.06161 * 13 12 8 16 16 C 1.53780 * 113.69462 * 76.87800 * 8 7 5 17 17 C 1.40137 * 119.62366 * 359.51116 * 4 3 2 18 18 O 1.35647 * 120.15211 * 180.22952 * 17 4 3 19 19 C 1.38705 * 119.69294 * 0.25772 * 17 4 3 20 20 C 1.50704 * 119.95285 * 180.02562 * 19 17 4 21 21 O 1.42903 * 109.47242 * 74.99908 * 20 19 17 22 22 Si 1.86302 * 109.47037 * 194.99474 * 20 19 17 23 23 C 1.38059 * 120.09090 * 359.97438 * 19 17 4 24 24 H 1.09002 * 109.47261 * 270.23126 * 1 2 3 25 25 H 1.08996 * 109.47181 * 30.23684 * 1 2 3 26 26 H 1.09002 * 109.47156 * 150.23634 * 1 2 3 27 27 H 1.07994 * 120.05196 * 0.02562 * 3 2 1 28 28 H 0.96999 * 119.99819 * 355.21823 * 7 5 4 29 29 H 0.97008 * 120.00121 * 4.99277 * 10 9 8 30 30 H 0.96993 * 120.00373 * 184.99810 * 10 9 8 31 31 H 1.09007 * 113.61036 * 105.38494 * 12 8 7 32 32 H 1.09000 * 113.61482 * 334.48028 * 12 8 7 33 33 H 0.96707 * 114.00600 * 181.52827 * 15 13 12 34 34 H 1.08996 * 113.61424 * 25.44332 * 16 8 7 35 35 H 1.09003 * 113.61325 * 254.53941 * 16 8 7 36 36 H 0.96706 * 113.99979 * 90.00698 * 18 17 4 37 37 H 1.08995 * 109.47330 * 314.99519 * 20 19 17 38 38 H 0.96703 * 114.00062 * 180.02562 * 21 20 19 39 39 H 1.48500 * 110.00389 * 178.67883 * 22 20 19 40 40 H 1.48496 * 110.00097 * 299.99987 * 22 20 19 41 41 H 1.07996 * 119.80862 * 180.02562 * 23 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1928 1.1951 0.0000 4 6 3.5898 1.1965 -0.0049 5 6 4.3304 2.4726 -0.0097 6 8 5.5463 2.4698 -0.0088 7 7 3.6592 3.6413 -0.0149 8 6 4.3907 4.9066 0.0861 9 6 5.2988 4.9633 1.2876 10 7 4.8462 4.5669 2.4936 11 8 6.4368 5.3655 1.1691 12 6 3.4976 6.1487 -0.0702 13 6 4.6382 6.7681 -0.8949 14 1 5.3627 7.3180 -0.2941 15 8 4.1869 7.5056 -2.0325 16 6 5.0752 5.3309 -1.2240 17 6 4.2837 -0.0210 0.0005 18 8 5.6401 -0.0322 0.0005 19 6 3.5771 -1.2145 0.0054 20 6 4.3174 -2.5272 0.0118 21 8 4.8541 -2.7650 1.3147 22 14 3.1449 -3.9036 -0.4373 23 6 2.1966 -1.2016 0.0053 24 1 -0.3634 0.0041 1.0277 25 1 -0.3633 0.8878 -0.5175 26 1 -0.3633 -0.8921 -0.5102 27 1 1.6511 2.1294 0.0004 28 1 2.6918 3.6447 -0.0856 29 1 3.9615 4.1777 2.5757 30 1 5.4051 4.6709 3.2795 31 1 3.3050 6.6688 0.8682 32 1 2.5914 5.9650 -0.6473 33 1 4.9006 7.8781 -2.5683 34 1 4.6004 4.9237 -2.1165 35 1 6.1562 5.1908 -1.2170 36 1 6.0335 -0.0315 0.8839 37 1 5.1293 -2.4901 -0.7144 38 1 5.3452 -3.5944 1.3925 39 1 3.8697 -5.1994 -0.4656 40 1 2.0333 -3.9648 0.5454 41 1 1.6510 -2.1336 0.0095 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13422088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:24 Heat of formation + Delta-G solvation = -140.604791 kcal Electronic energy + Delta-G solvation = -28362.321209 eV Core-core repulsion = 24209.870688 eV Total energy + Delta-G solvation = -4152.450521 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -42.44481 -41.40868 -39.69670 -39.03012 -38.08124 -37.74936 -36.42893 -34.85251 -34.32156 -33.16365 -32.47912 -27.56195 -27.07259 -26.96045 -26.68807 -24.89838 -23.05966 -21.86180 -21.38357 -20.53288 -19.65240 -19.09930 -18.64477 -18.38019 -18.32458 -17.88810 -17.39836 -16.76196 -16.69363 -16.12318 -15.96085 -15.91073 -15.50541 -15.41402 -15.18539 -15.00919 -14.72527 -14.40045 -14.09691 -13.82824 -13.72680 -13.57874 -13.37954 -13.18474 -12.95963 -12.62458 -12.50483 -12.44904 -11.89992 -11.85903 -11.77722 -11.44361 -11.13542 -10.86465 -10.83904 -10.50840 -10.36757 -10.09105 -9.51321 -4.96536 -0.38085 0.05534 1.21136 1.25575 1.54554 1.62594 1.84055 1.89425 2.27422 2.49383 3.12883 3.14746 3.18462 3.26840 3.34322 3.47867 3.65625 3.68238 3.79050 3.81890 4.07249 4.11268 4.15957 4.33835 4.51900 4.54597 4.60321 4.62522 4.74374 4.81871 4.83757 4.89178 4.92295 4.97977 5.17471 5.19112 5.26312 5.42821 5.66815 5.70888 6.20523 6.34720 6.49655 6.63627 6.75057 7.04440 7.12599 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.092 4.092 3 C -0.056 4.056 4 C -0.177 4.177 5 C 0.557 3.443 6 O -0.548 6.548 7 N -0.694 5.694 8 C 0.132 3.868 9 C 0.536 3.464 10 N -0.831 5.831 11 O -0.574 6.574 12 C -0.100 4.100 13 C 0.083 3.917 14 H 0.082 0.918 15 O -0.565 6.565 16 C -0.158 4.158 17 C 0.161 3.839 18 O -0.492 6.492 19 C -0.118 4.118 20 C -0.089 4.089 21 O -0.556 6.556 22 Si 0.775 3.225 23 C -0.079 4.079 24 H 0.082 0.918 25 H 0.090 0.910 26 H 0.079 0.921 27 H 0.170 0.830 28 H 0.424 0.576 29 H 0.415 0.585 30 H 0.409 0.591 31 H 0.106 0.894 32 H 0.134 0.866 33 H 0.398 0.602 34 H 0.104 0.896 35 H 0.056 0.944 36 H 0.400 0.600 37 H 0.076 0.924 38 H 0.395 0.605 39 H -0.288 1.288 40 H -0.276 1.276 41 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.790 -1.130 0.222 10.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.092 4.092 3 C -0.075 4.075 4 C -0.181 4.181 5 C 0.346 3.654 6 O -0.425 6.425 7 N -0.351 5.351 8 C 0.042 3.958 9 C 0.319 3.681 10 N -0.395 5.395 11 O -0.452 6.452 12 C -0.138 4.138 13 C 0.023 3.977 14 H 0.100 0.900 15 O -0.373 6.373 16 C -0.198 4.198 17 C 0.115 3.885 18 O -0.304 6.304 19 C -0.119 4.119 20 C -0.196 4.196 21 O -0.366 6.366 22 Si 0.678 3.322 23 C -0.097 4.097 24 H 0.100 0.900 25 H 0.109 0.891 26 H 0.098 0.902 27 H 0.187 0.813 28 H 0.265 0.735 29 H 0.245 0.755 30 H 0.241 0.759 31 H 0.124 0.876 32 H 0.152 0.848 33 H 0.248 0.752 34 H 0.122 0.878 35 H 0.075 0.925 36 H 0.258 0.742 37 H 0.094 0.906 38 H 0.245 0.755 39 H -0.215 1.215 40 H -0.203 1.203 41 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges -10.508 -1.178 -0.008 10.574 hybrid contribution 1.889 -0.568 1.471 2.461 sum -8.619 -1.746 1.463 8.915 Atomic orbital electron populations 1.20933 0.87777 1.04916 1.03766 1.20121 0.98229 0.91578 0.99312 1.21475 0.90657 1.00049 0.95295 1.20279 0.95097 0.91861 1.10842 1.18412 0.86976 0.84218 0.75794 1.90898 1.15007 1.87565 1.49012 1.45602 1.11198 1.02787 1.75537 1.21371 0.94802 0.85834 0.93824 1.20208 0.86745 0.75927 0.85209 1.43593 1.22432 1.64553 1.08893 1.90747 1.20077 1.48642 1.85704 1.23355 0.97974 0.90516 1.01911 1.23059 0.96603 0.89675 0.88379 0.89978 1.86422 1.38539 1.72225 1.40106 1.23952 1.01327 0.97779 0.96708 1.18543 0.83529 0.90938 0.95526 1.84654 1.15541 1.96087 1.34101 1.19725 0.94191 0.93376 1.04574 1.25036 1.04485 1.02331 0.87784 1.86494 1.74071 1.45931 1.30114 0.93904 0.77359 0.73302 0.87660 1.21384 0.92141 0.99918 0.96249 0.89979 0.89142 0.90190 0.81320 0.73513 0.75464 0.75914 0.87587 0.84786 0.75200 0.87788 0.92467 0.74160 0.90577 0.75510 1.21531 1.20300 0.83371 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 1.27 10.00 71.24 0.71 1.98 16 2 C -0.09 0.49 5.87 -19.90 -0.12 0.37 16 3 C -0.06 0.31 9.18 22.52 0.21 0.51 16 4 C -0.18 -0.41 5.89 -20.01 -0.12 -0.53 16 5 C 0.56 2.90 7.44 86.70 0.64 3.54 16 6 O -0.55 -8.43 14.17 16.92 0.24 -8.19 16 7 N -0.69 1.97 5.00 -427.03 -2.14 -0.17 16 8 C 0.13 0.14 1.03 3.39 0.00 0.15 16 9 C 0.54 3.59 5.71 87.66 0.50 4.09 16 10 N -0.83 0.90 8.85 -173.53 -1.53 -0.63 16 11 O -0.57 -9.62 16.47 -3.03 -0.05 -9.67 16 12 C -0.10 0.45 7.18 31.12 0.22 0.67 16 13 C 0.08 0.10 4.85 31.12 0.15 0.25 16 14 H 0.08 0.27 7.96 -2.39 -0.02 0.25 16 15 O -0.56 -0.39 13.67 -148.98 -2.04 -2.43 16 16 C -0.16 -0.80 6.91 31.12 0.22 -0.58 16 17 C 0.16 1.01 6.69 22.84 0.15 1.17 16 18 O -0.49 -5.02 10.91 -68.70 -0.75 -5.77 16 19 C -0.12 -0.34 5.30 -19.79 -0.10 -0.44 16 20 C -0.09 -0.12 2.37 71.24 0.17 0.05 16 21 O -0.56 -1.55 12.86 -148.98 -1.92 -3.47 16 22 Si 0.77 -2.15 30.19 68.60 2.07 -0.08 16 23 C -0.08 0.14 8.30 22.30 0.19 0.33 16 24 H 0.08 -0.94 8.14 -2.39 -0.02 -0.95 16 25 H 0.09 -1.24 8.08 -2.39 -0.02 -1.26 16 26 H 0.08 -0.91 8.08 -2.39 -0.02 -0.93 16 27 H 0.17 -2.33 6.42 -2.91 -0.02 -2.35 16 28 H 0.42 -4.72 6.70 -92.71 -0.62 -5.34 16 29 H 0.41 -3.01 8.63 -92.70 -0.80 -3.81 16 30 H 0.41 -0.81 8.93 -92.71 -0.83 -1.64 16 31 H 0.11 -0.78 8.09 -2.38 -0.02 -0.79 16 32 H 0.13 -1.16 8.14 -2.39 -0.02 -1.18 16 33 H 0.40 -2.26 9.12 -74.05 -0.68 -2.94 16 34 H 0.10 0.41 8.14 -2.39 -0.02 0.39 16 35 H 0.06 0.71 7.47 -2.39 -0.02 0.69 16 36 H 0.40 2.60 9.06 -74.05 -0.67 1.93 16 37 H 0.08 0.14 7.83 -2.39 -0.02 0.12 16 38 H 0.39 -1.81 8.74 -74.06 -0.65 -2.46 16 39 H -0.29 -0.58 7.11 99.48 0.71 0.12 16 40 H -0.28 -0.28 6.74 99.48 0.67 0.39 16 41 H 0.15 -0.72 4.87 -2.91 -0.01 -0.73 16 Total: 0.00 -33.01 347.11 -6.36 -39.37 By element: Atomic # 1 Polarization: -17.44 SS G_CDS: -3.07 Total: -20.51 kcal Atomic # 6 Polarization: 8.73 SS G_CDS: 2.82 Total: 11.56 kcal Atomic # 7 Polarization: 2.87 SS G_CDS: -3.67 Total: -0.81 kcal Atomic # 8 Polarization: -25.02 SS G_CDS: -4.51 Total: -29.53 kcal Atomic # 14 Polarization: -2.15 SS G_CDS: 2.07 Total: -0.08 kcal Total: -33.01 -6.36 -39.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13422088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -101.233 kcal (2) G-P(sol) polarization free energy of solvation -33.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -134.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.356 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -140.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds