Wall clock time and date at job start Sun Mar 7 2021 04:59:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46907 * 110.99901 * 2 1 4 4 C 1.39046 * 111.00645 * 236.04404 * 2 1 3 5 5 C 1.39200 * 119.93237 * 239.73126 * 4 2 1 6 6 C 1.50693 * 119.96220 * 359.97438 * 5 4 2 7 7 O 1.42900 * 109.47490 * 284.99968 * 6 5 4 8 8 Si 1.86306 * 109.46810 * 165.00134 * 6 5 4 9 9 C 1.37628 * 120.06680 * 179.71768 * 5 4 2 10 10 C 1.39780 * 119.93094 * 0.54923 * 9 5 4 11 11 C 1.47514 * 120.06729 * 179.74490 * 10 9 5 12 12 O 1.21603 * 120.00312 * 359.97438 * 11 10 9 13 13 N 1.34778 * 120.00104 * 179.97438 * 11 10 9 14 14 C 1.46500 * 120.00273 * 175.05785 * 13 11 10 15 15 C 1.50700 * 112.85250 * 67.38977 * 14 13 11 16 16 N 1.34782 * 119.99525 * 36.12099 * 15 14 13 17 17 O 1.21278 * 120.00336 * 216.11852 * 15 14 13 18 18 C 1.53787 * 113.61332 * 296.19538 * 14 13 11 19 19 C 1.53779 * 87.08212 * 270.88236 * 18 14 13 20 20 H 1.08998 * 113.61736 * 220.01650 * 19 18 14 21 21 O 1.42906 * 113.61062 * 89.19976 * 19 18 14 22 22 C 1.53783 * 87.08348 * 334.56965 * 19 18 14 23 23 C 1.39814 * 119.86357 * 359.72236 * 10 9 5 24 24 C 1.37585 * 119.92839 * 359.97438 * 23 10 9 25 25 H 1.09002 * 109.46899 * 183.95490 * 1 2 3 26 26 H 1.08996 * 109.47017 * 63.95935 * 1 2 3 27 27 H 1.08996 * 109.47124 * 303.95898 * 1 2 3 28 28 H 1.08991 * 109.47126 * 56.04461 * 3 2 1 29 29 H 1.09003 * 109.46990 * 176.04857 * 3 2 1 30 30 H 1.09000 * 109.46826 * 296.04332 * 3 2 1 31 31 H 1.08998 * 109.47487 * 45.00744 * 6 5 4 32 32 H 0.96698 * 114.00235 * 179.97438 * 7 6 5 33 33 H 1.48504 * 109.99909 * 60.00089 * 8 6 5 34 34 H 1.48500 * 109.99785 * 181.31728 * 8 6 5 35 35 H 1.07999 * 120.03654 * 180.25153 * 9 5 4 36 36 H 0.97001 * 119.99918 * 355.06442 * 13 11 10 37 37 H 0.97006 * 119.99708 * 355.00429 * 16 15 14 38 38 H 0.96998 * 119.99582 * 175.00848 * 16 15 14 39 39 H 1.08995 * 113.61460 * 25.43248 * 18 14 13 40 40 H 1.08998 * 113.61432 * 156.25158 * 18 14 13 41 41 H 0.96706 * 113.99997 * 180.02562 * 21 19 18 42 42 H 1.08997 * 113.60976 * 270.88173 * 22 19 18 43 43 H 1.08997 * 113.61610 * 139.97639 * 22 19 18 44 44 H 1.07998 * 120.03547 * 180.02562 * 23 10 9 45 45 H 1.08002 * 119.96678 * 180.02562 * 24 23 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.9674 -0.7250 -1.0767 5 6 2.7840 -1.8297 -0.8518 6 6 3.1270 -2.2375 0.5578 7 8 4.0943 -1.3325 1.0936 8 14 3.8281 -3.9636 0.5516 9 6 3.2742 -2.5527 -1.9153 10 6 2.9605 -2.1701 -3.2226 11 6 3.4889 -2.9396 -4.3648 12 8 4.1984 -3.9077 -4.1697 13 7 3.1852 -2.5697 -5.6248 14 6 3.7957 -3.2661 -6.7600 15 6 3.3343 -4.6951 -6.8868 16 7 2.0612 -5.0212 -6.5877 17 8 4.1086 -5.5516 -7.2579 18 6 5.3231 -3.1030 -6.8336 19 6 5.0691 -1.8416 -7.6755 20 1 5.7633 -1.7249 -8.5078 21 8 4.9319 -0.6514 -6.8964 22 6 3.7267 -2.4753 -8.0771 23 6 2.1447 -1.0567 -3.4453 24 6 1.6527 -0.3417 -2.3778 25 1 -0.3633 -1.0252 0.0709 26 1 -0.3633 0.4511 -0.9233 27 1 -0.3633 0.5740 0.8523 28 1 1.5898 1.9164 0.8523 29 1 3.0828 1.3433 0.0708 30 1 1.7043 1.8723 -0.9233 31 1 2.2271 -2.2132 1.1723 32 1 4.3621 -1.5345 2.0006 33 1 5.0556 -4.0102 -0.2829 34 1 4.1409 -4.3897 1.9393 35 1 3.9044 -3.4121 -1.7401 36 1 2.5625 -1.8423 -5.7800 37 1 1.4621 -4.3515 -6.2222 38 1 1.7442 -5.9255 -6.7380 39 1 5.7873 -2.8980 -5.8689 40 1 5.8216 -3.9024 -7.3818 41 1 4.7715 0.1454 -7.4204 42 1 3.7887 -3.1023 -8.9666 43 1 2.9022 -1.7635 -8.1164 44 1 1.9003 -0.7588 -4.4542 45 1 1.0221 0.5182 -2.5491 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_13422196.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 04:59:27 Heat of formation + Delta-G solvation = -74.194542 kcal Electronic energy + Delta-G solvation = -30471.307899 eV Core-core repulsion = 26263.918186 eV Total energy + Delta-G solvation = -4207.389713 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.39014 -41.34726 -39.95130 -39.18528 -37.84723 -37.28140 -36.18397 -34.80301 -34.12487 -32.74190 -31.22586 -28.48373 -27.39567 -27.00976 -26.89922 -25.76642 -23.46329 -22.80686 -22.32637 -21.30762 -20.40335 -19.17774 -19.01191 -18.51509 -18.00729 -17.94165 -17.72312 -17.19395 -16.56278 -16.35987 -16.18484 -15.99388 -15.81939 -15.75993 -15.32959 -15.10242 -15.05198 -14.85108 -14.57977 -14.05003 -13.91133 -13.80338 -13.61732 -13.38854 -13.32632 -13.24212 -13.00507 -12.71165 -12.58942 -12.39861 -12.11927 -11.97951 -11.91886 -11.41394 -11.13056 -11.03586 -10.76394 -10.43122 -10.17997 -10.10010 -9.76352 -9.48142 -5.03544 -0.38219 0.15960 1.23628 1.35056 1.47260 1.58280 1.84762 1.88638 2.45161 2.62130 2.82528 3.01871 3.25997 3.38120 3.41673 3.55642 3.67446 3.75469 3.78869 3.94948 4.06511 4.15384 4.25432 4.32836 4.41768 4.47905 4.49513 4.60422 4.64892 4.69674 4.70451 4.77263 4.80596 4.82797 4.89481 5.00563 5.03339 5.07331 5.14657 5.25983 5.27592 5.56657 5.78470 5.90359 6.27496 6.31030 6.38622 6.62368 6.92211 7.04392 7.20419 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.522 5.522 3 C 0.034 3.966 4 C 0.141 3.859 5 C -0.076 4.076 6 C -0.046 4.046 7 O -0.546 6.546 8 Si 0.725 3.275 9 C -0.069 4.069 10 C -0.147 4.147 11 C 0.562 3.438 12 O -0.570 6.570 13 N -0.675 5.675 14 C 0.129 3.871 15 C 0.524 3.476 16 N -0.832 5.832 17 O -0.584 6.584 18 C -0.135 4.135 19 C 0.095 3.905 20 H 0.096 0.904 21 O -0.559 6.559 22 C -0.134 4.134 23 C -0.048 4.048 24 C -0.154 4.154 25 H 0.073 0.927 26 H 0.045 0.955 27 H 0.083 0.917 28 H 0.084 0.916 29 H 0.055 0.945 30 H 0.042 0.958 31 H 0.099 0.901 32 H 0.391 0.609 33 H -0.314 1.314 34 H -0.275 1.275 35 H 0.120 0.880 36 H 0.423 0.577 37 H 0.414 0.586 38 H 0.407 0.593 39 H 0.054 0.946 40 H 0.103 0.897 41 H 0.402 0.598 42 H 0.115 0.885 43 H 0.125 0.875 44 H 0.167 0.833 45 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.481 8.146 -2.805 13.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.243 5.243 3 C -0.112 4.112 4 C 0.046 3.954 5 C -0.077 4.077 6 C -0.157 4.157 7 O -0.355 6.355 8 Si 0.633 3.367 9 C -0.088 4.088 10 C -0.150 4.150 11 C 0.351 3.649 12 O -0.450 6.450 13 N -0.331 5.331 14 C 0.039 3.961 15 C 0.308 3.692 16 N -0.395 5.395 17 O -0.462 6.462 18 C -0.174 4.174 19 C 0.035 3.965 20 H 0.114 0.886 21 O -0.367 6.367 22 C -0.172 4.172 23 C -0.067 4.067 24 C -0.174 4.174 25 H 0.092 0.908 26 H 0.063 0.937 27 H 0.102 0.898 28 H 0.103 0.897 29 H 0.074 0.926 30 H 0.061 0.939 31 H 0.117 0.883 32 H 0.241 0.759 33 H -0.243 1.243 34 H -0.202 1.202 35 H 0.138 0.862 36 H 0.264 0.736 37 H 0.244 0.756 38 H 0.238 0.762 39 H 0.073 0.927 40 H 0.121 0.879 41 H 0.253 0.747 42 H 0.133 0.867 43 H 0.143 0.857 44 H 0.184 0.816 45 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges -8.535 6.211 -2.365 10.817 hybrid contribution 0.128 1.065 0.104 1.078 sum -8.407 7.276 -2.261 11.346 Atomic orbital electron populations 1.22571 0.84110 1.03343 1.02196 1.59337 1.09594 1.14879 1.40510 1.22419 1.00426 0.86496 1.01909 1.18945 0.93896 0.92558 0.89951 1.19189 0.98685 0.96197 0.93607 1.24440 0.95934 1.01625 0.93659 1.86538 1.61150 1.52900 1.34906 0.94616 0.84644 0.79033 0.78443 1.21102 0.96967 0.98837 0.91931 1.19704 1.03796 0.99363 0.92106 1.18476 0.79558 0.83245 0.83657 1.90859 1.39189 1.29107 1.85831 1.45192 1.47416 1.37760 1.02712 1.21467 0.95563 0.88752 0.90349 1.20859 0.82363 0.90692 0.75314 1.43662 1.12312 1.17011 1.66529 1.90731 1.54960 1.51258 1.49298 1.23343 0.94186 0.98346 1.01526 1.22534 0.96132 0.84760 0.93046 0.88616 1.86493 1.94800 1.17750 1.37706 1.23895 1.00920 0.99170 0.93220 1.21443 0.92893 0.91470 1.00940 1.21874 1.01990 1.01548 0.91981 0.90822 0.93688 0.89834 0.89726 0.92591 0.93916 0.88313 0.75865 1.24335 1.20165 0.86226 0.73582 0.75577 0.76191 0.92697 0.87897 0.74695 0.86668 0.85708 0.81595 0.82689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.13 9.34 127.69 1.19 1.06 16 2 N -0.52 0.45 4.20 -745.11 -3.13 -2.68 16 3 C 0.03 -0.07 9.38 127.69 1.20 1.13 16 4 C 0.14 0.12 4.70 38.47 0.18 0.30 16 5 C -0.08 -0.35 5.31 -19.78 -0.10 -0.45 16 6 C -0.05 -0.15 2.32 71.23 0.17 0.02 16 7 O -0.55 -2.81 12.86 -148.98 -1.92 -4.72 16 8 Si 0.72 3.46 30.18 68.60 2.07 5.53 16 9 C -0.07 -0.49 8.19 22.50 0.18 -0.31 16 10 C -0.15 -0.48 5.88 -20.08 -0.12 -0.60 16 11 C 0.56 3.63 7.24 86.69 0.63 4.26 16 12 O -0.57 -9.72 15.04 -4.04 -0.06 -9.79 16 13 N -0.68 1.28 4.03 -427.04 -1.72 -0.44 16 14 C 0.13 0.20 0.96 3.39 0.00 0.20 16 15 C 0.52 3.75 6.61 87.66 0.58 4.32 16 16 N -0.83 0.56 8.83 -173.53 -1.53 -0.97 16 17 O -0.58 -10.01 16.74 -3.02 -0.05 -10.06 16 18 C -0.14 -0.86 6.66 31.12 0.21 -0.65 16 19 C 0.09 -0.32 5.27 31.12 0.16 -0.16 16 20 H 0.10 -0.60 8.14 -2.39 -0.02 -0.62 16 21 O -0.56 2.40 13.09 -148.98 -1.95 0.45 16 22 C -0.13 0.91 7.20 31.12 0.22 1.14 16 23 C -0.05 0.22 9.52 22.50 0.21 0.43 16 24 C -0.15 0.60 8.53 22.36 0.19 0.79 16 25 H 0.07 -0.40 8.14 -2.39 -0.02 -0.42 16 26 H 0.04 -0.35 7.09 -2.39 -0.02 -0.36 16 27 H 0.08 -0.56 8.12 -2.39 -0.02 -0.58 16 28 H 0.08 -0.34 8.12 -2.39 -0.02 -0.36 16 29 H 0.06 0.12 8.14 -2.39 -0.02 0.10 16 30 H 0.04 -0.20 7.32 -2.39 -0.02 -0.21 16 31 H 0.10 -0.01 7.77 -2.39 -0.02 -0.03 16 32 H 0.39 -0.93 8.74 -74.06 -0.65 -1.57 16 33 H -0.31 -4.75 6.76 99.48 0.67 -4.08 16 34 H -0.28 -1.98 7.11 99.48 0.71 -1.27 16 35 H 0.12 1.36 4.46 -2.91 -0.01 1.35 16 36 H 0.42 -4.28 6.71 -92.71 -0.62 -4.91 16 37 H 0.41 -2.84 8.33 -92.70 -0.77 -3.61 16 38 H 0.41 -0.70 8.93 -92.71 -0.83 -1.53 16 39 H 0.05 0.72 7.38 -2.39 -0.02 0.71 16 40 H 0.10 0.93 7.34 -2.39 -0.02 0.91 16 41 H 0.40 -5.57 9.12 -74.05 -0.68 -6.25 16 42 H 0.12 -0.78 8.10 -2.39 -0.02 -0.80 16 43 H 0.12 -1.71 8.10 -2.39 -0.02 -1.73 16 44 H 0.17 -2.13 6.40 -2.91 -0.02 -2.15 16 45 H 0.16 -1.36 6.99 -2.91 -0.02 -1.39 16 Total: 0.00 -34.17 369.39 -5.82 -39.99 By element: Atomic # 1 Polarization: -26.35 SS G_CDS: -2.44 Total: -28.79 kcal Atomic # 6 Polarization: 6.58 SS G_CDS: 4.91 Total: 11.48 kcal Atomic # 7 Polarization: 2.29 SS G_CDS: -6.38 Total: -4.09 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -3.98 Total: -24.12 kcal Atomic # 14 Polarization: 3.46 SS G_CDS: 2.07 Total: 5.53 kcal Total: -34.17 -5.82 -39.99 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_13422196.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.207 kcal (2) G-P(sol) polarization free energy of solvation -34.166 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.821 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.987 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds