Wall clock time and date at job start Sat Mar 6 2021 22:40:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34771 * 1 3 3 O 1.21280 * 120.00389 * 2 1 4 4 C 1.50708 * 119.99861 * 179.97438 * 2 1 3 5 5 N 1.46497 * 112.84656 * 24.88983 * 4 2 1 6 6 C 1.34782 * 120.00284 * 65.93394 * 5 4 2 7 7 O 1.21284 * 119.99483 * 5.00271 * 6 5 4 8 8 C 1.50696 * 120.00366 * 184.99839 * 6 5 4 9 9 C 1.50701 * 109.47336 * 180.02562 * 8 6 5 10 10 C 1.34852 * 125.88473 * 85.02720 * 9 8 6 11 11 C 1.40895 * 107.41194 * 180.02562 * 10 9 8 12 12 C 1.34845 * 107.41646 * 359.97438 * 11 10 9 13 13 C 1.50705 * 125.88922 * 179.97438 * 12 11 10 14 14 O 1.42899 * 109.46967 * 120.02852 * 13 12 11 15 15 Si 1.86299 * 109.47009 * 0.02820 * 13 12 11 16 16 N 1.36338 * 108.22279 * 359.73828 * 12 11 10 17 17 C 1.53776 * 113.69117 * 253.62086 * 4 2 1 18 18 C 1.53786 * 87.07773 * 220.00901 * 17 4 2 19 19 H 1.08999 * 113.61121 * 139.98742 * 18 17 4 20 20 O 1.42904 * 113.61295 * 270.88220 * 18 17 4 21 21 C 1.53778 * 87.08088 * 25.43388 * 18 17 4 22 22 H 0.96995 * 120.00500 * 175.01197 * 1 2 3 23 23 H 0.97010 * 119.99626 * 355.00886 * 1 2 3 24 24 H 0.97000 * 120.00239 * 245.94093 * 5 4 2 25 25 H 1.09000 * 109.46905 * 300.00822 * 8 6 5 26 26 H 1.09007 * 109.47008 * 60.00294 * 8 6 5 27 27 H 1.08000 * 126.29527 * 359.97438 * 10 9 8 28 28 H 1.07996 * 126.28831 * 180.02562 * 11 10 9 29 29 H 1.09001 * 109.47322 * 240.02562 * 13 12 11 30 30 H 0.96704 * 114.00025 * 299.99987 * 14 13 12 31 31 H 1.48502 * 110.00226 * 180.02562 * 15 13 12 32 32 H 1.48504 * 110.00086 * 301.31796 * 15 13 12 33 33 H 0.97005 * 125.64090 * 180.25875 * 16 12 11 34 34 H 1.09000 * 113.61535 * 334.55316 * 17 4 2 35 35 H 1.08999 * 113.61350 * 105.37515 * 17 4 2 36 36 H 0.96700 * 114.00036 * 277.50278 * 20 18 17 37 37 H 1.09005 * 113.61104 * 220.02143 * 21 18 17 38 38 H 1.08992 * 113.61526 * 89.12132 * 21 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3477 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1012 -1.3052 0.0006 5 7 1.3250 -2.4103 -0.5671 6 6 0.9919 -2.3989 -1.8731 7 8 1.4106 -1.5213 -2.5980 8 6 0.0994 -3.4765 -2.4326 9 6 -0.1173 -3.2356 -3.9043 10 6 0.6986 -3.6381 -4.8997 11 6 0.1270 -3.2078 -6.1135 12 6 -1.0165 -2.5592 -5.8135 13 6 -1.9598 -1.9272 -6.8044 14 8 -3.2480 -2.5351 -6.6903 15 14 -1.3058 -2.1773 -8.5308 16 7 -1.1750 -2.5784 -4.4595 17 6 2.7540 -1.6412 1.3518 18 6 3.9644 -2.1503 0.5512 19 1 4.9240 -1.8883 0.9967 20 8 3.8750 -3.5313 0.1948 21 6 3.5247 -1.1948 -0.5707 22 1 -0.4850 -0.8368 -0.0730 23 1 -0.4850 0.8370 0.0731 24 1 1.0507 -3.1503 -0.0031 25 1 0.5704 -4.4490 -2.2893 26 1 -0.8603 -3.4581 -1.9159 27 1 1.6210 -4.1885 -4.7872 28 1 0.5302 -3.3686 -7.1023 29 1 -2.0421 -0.8601 -6.5981 30 1 -3.2503 -3.4869 -6.8612 31 1 -2.2267 -1.5580 -9.5176 32 1 0.0471 -1.5773 -8.6534 33 1 -1.9162 -2.1866 -3.9715 34 1 2.9716 -0.7643 1.9616 35 1 2.2345 -2.4234 1.9052 36 1 4.1502 -4.1371 0.8965 37 1 3.6281 -1.6179 -1.5700 38 1 3.9529 -0.1961 -0.4864 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_14644196.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:40:53 Heat of formation + Delta-G solvation = -82.878030 kcal Electronic energy + Delta-G solvation = -24551.002253 eV Core-core repulsion = 20782.537374 eV Total energy + Delta-G solvation = -3768.464879 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 296.125 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.47704 -42.07720 -39.94820 -39.17972 -37.70021 -36.10858 -34.88661 -33.99243 -32.77674 -31.92513 -29.45277 -27.15347 -26.84166 -25.14159 -22.64119 -22.07923 -21.36559 -21.02050 -20.40502 -19.20228 -18.96889 -18.27893 -18.03866 -17.87225 -17.02398 -16.61919 -16.31402 -16.17236 -16.09119 -15.54720 -15.31033 -15.06681 -14.88044 -14.60503 -14.33801 -14.06480 -13.87422 -13.81013 -13.67596 -13.29107 -13.24912 -12.74449 -12.36235 -12.10858 -12.01338 -11.96097 -11.38576 -11.01874 -10.94869 -10.84193 -10.65877 -10.07778 -9.79805 -8.96186 -4.98535 1.07925 1.24737 1.34799 1.54179 1.67217 1.80597 1.93775 2.16826 2.43682 2.48518 3.02974 3.29778 3.44993 3.49375 3.63333 3.67106 3.78031 3.83815 4.04675 4.21758 4.37443 4.38358 4.48402 4.59979 4.63987 4.69701 4.78883 4.82979 4.83756 4.91064 5.25028 5.28917 5.33210 5.69942 5.98925 6.12271 6.23528 6.47076 6.67048 6.70267 6.92583 7.11478 7.22588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.834 5.834 2 C 0.523 3.477 3 O -0.586 6.586 4 C 0.133 3.867 5 N -0.684 5.684 6 C 0.511 3.489 7 O -0.565 6.565 8 C -0.063 4.063 9 C 0.035 3.965 10 C -0.201 4.201 11 C -0.204 4.204 12 C -0.020 4.020 13 C -0.051 4.051 14 O -0.556 6.556 15 Si 0.808 3.192 16 N -0.534 5.534 17 C -0.137 4.137 18 C 0.096 3.904 19 H 0.092 0.908 20 O -0.556 6.556 21 C -0.133 4.133 22 H 0.412 0.588 23 H 0.405 0.595 24 H 0.426 0.574 25 H 0.145 0.855 26 H 0.138 0.862 27 H 0.138 0.862 28 H 0.148 0.852 29 H 0.099 0.901 30 H 0.398 0.602 31 H -0.292 1.292 32 H -0.297 1.297 33 H 0.419 0.581 34 H 0.107 0.893 35 H 0.122 0.878 36 H 0.402 0.598 37 H 0.062 0.938 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.313 -9.824 6.724 12.357 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.306 3.694 3 O -0.466 6.466 4 C 0.042 3.958 5 N -0.340 5.340 6 C 0.298 3.702 7 O -0.443 6.443 8 C -0.103 4.103 9 C -0.079 4.079 10 C -0.226 4.226 11 C -0.229 4.229 12 C -0.134 4.134 13 C -0.160 4.160 14 O -0.364 6.364 15 Si 0.713 3.287 16 N -0.129 5.129 17 C -0.175 4.175 18 C 0.037 3.963 19 H 0.110 0.890 20 O -0.364 6.364 21 C -0.172 4.172 22 H 0.243 0.757 23 H 0.236 0.764 24 H 0.266 0.734 25 H 0.163 0.837 26 H 0.156 0.844 27 H 0.155 0.845 28 H 0.166 0.834 29 H 0.117 0.883 30 H 0.248 0.752 31 H -0.219 1.219 32 H -0.225 1.225 33 H 0.257 0.743 34 H 0.125 0.875 35 H 0.140 0.860 36 H 0.253 0.747 37 H 0.080 0.920 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -2.754 -7.358 5.155 9.397 hybrid contribution -0.492 0.562 1.169 1.388 sum -3.247 -6.796 6.325 9.835 Atomic orbital electron populations 1.43687 1.06554 1.13865 1.75591 1.20988 0.83547 0.91052 0.73765 1.90737 1.69395 1.34540 1.51882 1.21342 0.90817 0.84552 0.99122 1.45384 1.55163 1.23682 1.09810 1.21214 0.80833 0.86585 0.81567 1.90817 1.54723 1.39647 1.59072 1.20245 1.01921 0.99270 0.88851 1.19888 0.90755 1.02513 0.94739 1.20839 1.01433 1.08079 0.92202 1.20896 0.96979 1.05655 0.99347 1.20928 1.00208 1.07896 0.84368 1.24870 0.85430 0.98107 1.07630 1.86438 1.27135 1.28773 1.94068 0.93116 0.74882 0.89377 0.71315 1.41823 1.20483 1.44495 1.06140 1.23865 0.96877 1.03925 0.92826 1.22492 0.97609 0.82423 0.93802 0.89045 1.86467 1.89983 1.14848 1.45124 1.23302 0.93786 1.00286 0.99807 0.75708 0.76402 0.73368 0.83731 0.84398 0.84457 0.83415 0.88346 0.75203 1.21928 1.22491 0.74296 0.87468 0.85958 0.74692 0.91964 0.88685 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 0.93 8.76 -173.53 -1.52 -0.59 16 2 C 0.52 3.35 6.75 87.66 0.59 3.94 16 3 O -0.59 -9.63 16.89 -3.03 -0.05 -9.69 16 4 C 0.13 0.03 1.00 3.38 0.00 0.03 16 5 N -0.68 3.89 3.85 -423.92 -1.63 2.26 16 6 C 0.51 0.05 7.07 87.65 0.62 0.67 16 7 O -0.57 -6.97 14.58 -3.04 -0.04 -7.01 16 8 C -0.06 0.42 6.24 29.10 0.18 0.60 16 9 C 0.04 0.05 5.66 41.08 0.23 0.29 16 10 C -0.20 -1.05 10.77 22.14 0.24 -0.82 16 11 C -0.20 -1.03 9.37 22.14 0.21 -0.82 16 12 C -0.02 -0.08 6.50 41.08 0.27 0.19 16 13 C -0.05 -0.09 3.08 71.24 0.22 0.13 16 14 O -0.56 -0.17 12.88 -148.98 -1.92 -2.09 16 15 Si 0.81 0.33 30.58 68.60 2.10 2.42 16 16 N -0.53 -0.82 6.07 -171.12 -1.04 -1.86 16 17 C -0.14 0.87 7.19 31.12 0.22 1.09 16 18 C 0.10 -0.36 5.28 31.12 0.16 -0.19 16 19 H 0.09 -0.54 8.14 -2.39 -0.02 -0.56 16 20 O -0.56 3.08 13.09 -148.98 -1.95 1.13 16 21 C -0.13 -0.71 6.67 31.12 0.21 -0.51 16 22 H 0.41 -3.09 7.84 -92.71 -0.73 -3.82 16 23 H 0.40 -0.71 8.93 -92.70 -0.83 -1.54 16 24 H 0.43 -5.79 8.67 -92.71 -0.80 -6.59 16 25 H 0.14 -1.63 8.14 -2.39 -0.02 -1.65 16 26 H 0.14 -1.97 8.14 -2.38 -0.02 -1.99 16 27 H 0.14 0.53 8.06 -2.91 -0.02 0.51 16 28 H 0.15 0.31 6.22 -2.91 -0.02 0.29 16 29 H 0.10 0.38 7.96 -2.39 -0.02 0.36 16 30 H 0.40 -3.02 8.70 -74.05 -0.64 -3.67 16 31 H -0.29 -1.84 7.11 99.48 0.71 -1.13 16 32 H -0.30 -2.21 7.11 99.48 0.71 -1.50 16 33 H 0.42 -0.98 8.96 -92.70 -0.83 -1.81 16 34 H 0.11 -0.53 8.10 -2.39 -0.02 -0.55 16 35 H 0.12 -1.58 8.09 -2.39 -0.02 -1.60 16 36 H 0.40 -5.89 9.12 -74.06 -0.68 -6.57 16 37 H 0.06 0.71 7.19 -2.38 -0.02 0.69 16 38 H 0.09 0.86 7.38 -2.39 -0.02 0.84 16 Total: 0.00 -34.91 326.14 -6.19 -41.10 By element: Atomic # 1 Polarization: -26.99 SS G_CDS: -3.29 Total: -30.27 kcal Atomic # 6 Polarization: 1.45 SS G_CDS: 3.16 Total: 4.60 kcal Atomic # 7 Polarization: 4.00 SS G_CDS: -4.19 Total: -0.19 kcal Atomic # 8 Polarization: -13.70 SS G_CDS: -3.96 Total: -17.66 kcal Atomic # 14 Polarization: 0.33 SS G_CDS: 2.10 Total: 2.42 kcal Total: -34.91 -6.19 -41.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_14644196.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.782 kcal (2) G-P(sol) polarization free energy of solvation -34.909 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.692 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.096 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds