Wall clock time and date at job start Sat Mar 6 2021 22:41:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34785 * 1 3 3 O 1.21279 * 120.00076 * 2 1 4 4 C 1.50702 * 119.99735 * 180.02562 * 2 1 3 5 5 N 1.46501 * 112.85050 * 325.54759 * 4 2 1 6 6 C 1.34771 * 119.99968 * 298.34166 * 5 4 2 7 7 O 1.21633 * 119.99885 * 354.99811 * 6 5 4 8 8 C 1.47260 * 120.00186 * 174.99864 * 6 5 4 9 9 C 1.36342 * 126.96924 * 179.97438 * 8 6 5 10 10 C 1.50997 * 126.79157 * 0.06250 * 9 8 6 11 11 C 1.53393 * 108.25290 * 164.30303 * 10 9 8 12 12 C 1.53164 * 109.04631 * 48.46135 * 11 10 9 13 13 C 1.53136 * 109.52364 * 290.42968 * 12 11 10 14 14 N 1.35206 * 108.66042 * 180.02562 * 9 8 6 15 15 C 1.36431 * 109.90164 * 359.70456 * 14 9 8 16 16 C 1.50696 * 125.49871 * 180.30133 * 15 14 9 17 17 O 1.42901 * 109.47074 * 30.21517 * 16 15 14 18 18 Si 1.86305 * 109.47270 * 150.21168 * 16 15 14 19 19 C 1.34499 * 109.00886 * 0.46745 * 15 14 9 20 20 C 1.53772 * 113.61374 * 194.34905 * 4 2 1 21 21 C 1.54054 * 86.98583 * 219.98150 * 20 4 2 22 22 H 1.09008 * 113.61913 * 139.98029 * 21 20 4 23 23 O 1.42903 * 113.68727 * 270.87081 * 21 20 4 24 24 C 1.53778 * 87.07506 * 25.43325 * 21 20 4 25 25 H 0.97001 * 120.00105 * 175.08276 * 1 2 3 26 26 H 0.96993 * 119.99615 * 355.07635 * 1 2 3 27 27 H 0.97002 * 119.99825 * 118.34331 * 5 4 2 28 28 H 1.09002 * 109.70872 * 283.99296 * 10 9 8 29 29 H 1.09000 * 109.70784 * 44.61667 * 10 9 8 30 30 H 1.08997 * 109.54269 * 168.32871 * 11 10 9 31 31 H 1.08997 * 109.54406 * 288.50569 * 11 10 9 32 32 H 1.08997 * 109.45947 * 50.44192 * 12 11 10 33 33 H 1.08996 * 109.46400 * 170.41257 * 12 11 10 34 34 H 1.08993 * 109.56218 * 170.83000 * 13 12 11 35 35 H 1.09004 * 109.56050 * 291.05750 * 13 12 11 36 36 H 1.08997 * 109.47633 * 270.21963 * 16 15 14 37 37 H 0.96708 * 113.99659 * 59.99640 * 17 16 15 38 38 H 1.48496 * 110.00085 * 180.02562 * 18 16 15 39 39 H 1.48499 * 109.99908 * 301.32594 * 18 16 15 40 40 H 1.07997 * 126.81544 * 179.82642 * 19 15 14 41 41 H 1.09007 * 113.61727 * 334.48159 * 20 4 2 42 42 H 1.08999 * 113.61668 * 105.38813 * 20 4 2 43 43 H 0.96696 * 114.00217 * 277.52985 * 23 21 20 44 44 H 1.09004 * 113.60980 * 220.02107 * 24 21 20 45 45 H 1.09000 * 113.61539 * 89.12253 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3479 0.0000 0.0000 3 8 1.9543 1.0503 0.0000 4 6 2.1013 -1.3052 -0.0006 5 7 1.4216 -2.3548 0.7627 6 6 1.2033 -2.1939 2.0828 7 8 1.6499 -1.2202 2.6589 8 6 0.4242 -3.1971 2.8279 9 6 0.1198 -3.1773 4.1568 10 6 0.5145 -2.1194 5.1593 11 6 -0.3564 -2.2939 6.4100 12 6 -0.3460 -3.7684 6.8244 13 6 -1.1178 -4.5956 5.7923 14 7 -0.6093 -4.2775 4.4500 15 6 -0.7967 -5.0243 3.3237 16 6 -1.5649 -6.3186 3.2496 17 8 -2.6028 -6.3133 4.2319 18 14 -2.3156 -6.4991 1.5541 19 6 -0.1821 -4.4208 2.2907 20 6 3.5914 -1.1563 0.3487 21 6 3.8689 -2.2053 -0.7449 22 1 4.7523 -1.9873 -1.3451 23 8 3.8402 -3.5524 -0.2687 24 6 2.5525 -1.7553 -1.4001 25 1 -0.4850 -0.8370 -0.0720 26 1 -0.4849 0.8369 0.0721 27 1 1.1287 -3.1655 0.3179 28 1 1.5653 -2.2372 5.4237 29 1 0.3509 -1.1297 4.7328 30 1 0.0433 -1.6846 7.2205 31 1 -1.3775 -1.9831 6.1895 32 1 0.6832 -4.1233 6.8780 33 1 -0.8179 -3.8744 7.8012 34 1 -0.9751 -5.6570 5.9949 35 1 -2.1788 -4.3524 5.8494 36 1 -0.8899 -7.1532 3.4389 37 1 -3.2420 -5.5955 4.1249 38 1 -3.0765 -7.7714 1.4684 39 1 -3.2136 -5.3506 1.2714 40 1 -0.1458 -4.7659 1.2680 41 1 3.9970 -0.1705 0.1209 42 1 3.8402 -1.4955 1.3542 43 1 4.6654 -3.8412 0.1444 44 1 1.9631 -2.5777 -1.8054 45 1 2.6745 -0.9329 -2.1051 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14243910_16915396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:01 Heat of formation + Delta-G solvation = -76.948312 kcal Electronic energy + Delta-G solvation = -30977.969129 eV Core-core repulsion = 26770.460004 eV Total energy + Delta-G solvation = -4207.509125 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.81703 -41.91841 -39.42315 -38.93671 -38.14509 -36.93656 -35.96427 -34.55959 -33.68869 -33.30195 -31.20930 -29.51983 -27.05496 -26.94383 -26.37568 -24.69304 -23.95796 -22.21930 -21.74972 -21.24039 -20.16396 -19.67361 -19.00928 -18.90048 -17.87480 -17.74354 -17.26873 -17.06411 -16.73317 -16.43915 -15.96448 -15.57959 -15.52333 -15.42543 -15.31413 -15.26708 -15.19185 -14.85513 -14.66814 -14.41829 -14.27623 -13.92053 -13.70303 -13.45922 -13.26691 -12.94460 -12.77552 -12.45152 -12.35291 -12.18235 -12.09413 -11.93142 -11.81557 -11.67496 -11.17213 -10.97858 -10.88543 -10.59637 -10.50775 -9.87022 -9.56355 -9.02063 -5.05335 0.82688 0.97336 1.38700 1.56018 1.62423 1.72781 1.95162 2.30638 2.56305 2.74382 2.98342 3.06203 3.40260 3.40737 3.48561 3.59387 3.60119 3.72929 3.74154 3.74711 3.96649 4.15698 4.18814 4.28200 4.35008 4.40074 4.41879 4.53043 4.59591 4.63304 4.65883 4.71026 4.77707 4.85953 4.87253 4.97978 5.01349 5.12609 5.14263 5.17633 5.54822 5.73278 5.92317 6.00264 6.19039 6.20638 6.45024 6.63088 6.70791 7.39018 7.49344 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.849 5.849 2 C 0.534 3.466 3 O -0.534 6.534 4 C 0.137 3.863 5 N -0.699 5.699 6 C 0.596 3.404 7 O -0.537 6.537 8 C -0.233 4.233 9 C 0.122 3.878 10 C -0.056 4.056 11 C -0.129 4.129 12 C -0.139 4.139 13 C 0.108 3.892 14 N -0.427 5.427 15 C -0.012 4.012 16 C -0.052 4.052 17 O -0.534 6.534 18 Si 0.712 3.288 19 C -0.160 4.160 20 C -0.152 4.152 21 C 0.082 3.918 22 H 0.078 0.922 23 O -0.547 6.547 24 C -0.120 4.120 25 H 0.400 0.600 26 H 0.401 0.599 27 H 0.407 0.593 28 H 0.088 0.912 29 H 0.099 0.901 30 H 0.080 0.920 31 H 0.067 0.933 32 H 0.075 0.925 33 H 0.088 0.912 34 H 0.096 0.904 35 H 0.082 0.918 36 H 0.121 0.879 37 H 0.376 0.624 38 H -0.255 1.255 39 H -0.257 1.257 40 H 0.154 0.846 41 H 0.110 0.890 42 H 0.087 0.913 43 H 0.385 0.615 44 H 0.093 0.907 45 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.464 -4.908 -1.305 5.285 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.412 5.412 2 C 0.316 3.684 3 O -0.409 6.409 4 C 0.046 3.954 5 N -0.353 5.353 6 C 0.386 3.614 7 O -0.414 6.414 8 C -0.242 4.242 9 C 0.004 3.996 10 C -0.094 4.094 11 C -0.166 4.166 12 C -0.177 4.177 13 C -0.013 4.013 14 N -0.104 5.104 15 C -0.121 4.121 16 C -0.161 4.161 17 O -0.340 6.340 18 Si 0.611 3.389 19 C -0.184 4.184 20 C -0.191 4.191 21 C 0.022 3.978 22 H 0.096 0.904 23 O -0.353 6.353 24 C -0.158 4.158 25 H 0.228 0.772 26 H 0.232 0.768 27 H 0.244 0.756 28 H 0.107 0.893 29 H 0.118 0.882 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.094 0.906 33 H 0.107 0.893 34 H 0.114 0.886 35 H 0.100 0.900 36 H 0.138 0.862 37 H 0.224 0.776 38 H -0.180 1.180 39 H -0.181 1.181 40 H 0.171 0.829 41 H 0.128 0.872 42 H 0.105 0.895 43 H 0.233 0.767 44 H 0.111 0.889 45 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -1.780 -4.324 -1.048 4.792 hybrid contribution -0.806 -0.061 0.964 1.258 sum -2.586 -4.385 -0.084 5.092 Atomic orbital electron populations 1.43782 1.07303 1.12898 1.77210 1.20434 0.82686 0.90691 0.74544 1.90747 1.68241 1.32724 1.49187 1.21318 0.93283 0.86125 0.94710 1.45324 1.60772 1.20706 1.08526 1.17329 0.78538 0.84684 0.80887 1.90822 1.50933 1.31315 1.68352 1.19737 1.11868 0.99471 0.93149 1.20374 0.95410 0.89495 0.94317 1.20519 1.00279 0.96646 0.91929 1.21722 1.00816 0.95956 0.98155 1.21943 1.01656 0.95510 0.98578 1.22104 0.98704 1.01511 0.78952 1.43851 1.40736 1.17710 1.08065 1.20675 1.07446 0.97456 0.86476 1.24830 0.91099 0.95278 1.04883 1.86592 1.40160 1.55409 1.51795 0.94545 0.85532 0.80513 0.78340 1.21644 1.03255 0.95455 0.98073 1.23946 0.92623 1.01305 1.01217 1.22689 0.97645 0.82498 0.94939 0.90420 1.86398 1.41667 1.27062 1.80127 1.23308 0.96620 1.02059 0.93774 0.77188 0.76818 0.75598 0.89326 0.88233 0.90180 0.91378 0.90626 0.89321 0.88557 0.89967 0.86161 0.77645 1.17980 1.18101 0.82911 0.87177 0.89465 0.76727 0.88874 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -0.33 8.78 31.22 0.27 -0.06 16 2 C 0.53 1.85 6.47 -10.98 -0.07 1.77 16 3 O -0.53 -4.05 16.76 5.56 0.09 -3.96 16 4 C 0.14 0.14 0.95 -132.16 -0.13 0.01 16 5 N -0.70 0.02 4.16 -49.04 -0.20 -0.19 16 6 C 0.60 1.64 7.36 -12.60 -0.09 1.55 16 7 O -0.54 -3.36 14.06 5.25 0.07 -3.29 16 8 C -0.23 -0.41 6.28 -103.48 -0.65 -1.06 16 9 C 0.12 0.21 6.57 -81.64 -0.54 -0.32 16 10 C -0.06 -0.07 5.32 -27.53 -0.15 -0.21 16 11 C -0.13 0.14 5.98 -26.44 -0.16 -0.02 16 12 C -0.14 0.26 5.92 -26.58 -0.16 0.11 16 13 C 0.11 -0.15 5.32 -3.69 -0.02 -0.17 16 14 N -0.43 -0.14 3.11 -107.37 -0.33 -0.47 16 15 C -0.01 0.00 6.15 -81.87 -0.50 -0.50 16 16 C -0.05 0.08 2.99 36.00 0.11 0.19 16 17 O -0.53 0.46 10.70 -35.23 -0.38 0.08 16 18 Si 0.71 -1.75 31.11 -169.99 -5.29 -7.04 16 19 C -0.16 0.10 9.09 -37.47 -0.34 -0.24 16 20 C -0.15 -0.26 6.72 -25.78 -0.17 -0.43 16 21 C 0.08 -0.09 5.28 -25.78 -0.14 -0.23 16 22 H 0.08 -0.18 8.14 -51.92 -0.42 -0.60 16 23 O -0.55 0.69 13.10 -35.23 -0.46 0.23 16 24 C -0.12 0.17 7.18 -25.92 -0.19 -0.02 16 25 H 0.40 -0.78 8.42 -40.82 -0.34 -1.13 16 26 H 0.40 -0.05 8.93 -40.82 -0.36 -0.42 16 27 H 0.41 -0.91 7.78 -40.82 -0.32 -1.22 16 28 H 0.09 0.14 8.14 -51.93 -0.42 -0.28 16 29 H 0.10 0.26 7.40 -51.93 -0.38 -0.12 16 30 H 0.08 -0.14 8.14 -51.93 -0.42 -0.56 16 31 H 0.07 -0.06 8.12 -51.93 -0.42 -0.49 16 32 H 0.08 -0.09 8.11 -51.93 -0.42 -0.51 16 33 H 0.09 -0.28 8.14 -51.93 -0.42 -0.71 16 34 H 0.10 -0.12 7.72 -51.93 -0.40 -0.52 16 35 H 0.08 -0.19 7.93 -51.93 -0.41 -0.60 16 36 H 0.12 -0.26 7.96 -51.93 -0.41 -0.67 16 37 H 0.38 -1.14 8.64 45.56 0.39 -0.75 16 38 H -0.26 -0.20 7.11 56.52 0.40 0.20 16 39 H -0.26 0.00 7.11 56.52 0.40 0.40 16 40 H 0.15 -0.58 6.53 -52.49 -0.34 -0.92 16 41 H 0.11 0.30 7.34 -51.92 -0.38 -0.08 16 42 H 0.09 0.29 7.56 -51.93 -0.39 -0.10 16 43 H 0.38 -1.60 9.12 45.56 0.42 -1.19 16 44 H 0.09 -0.27 8.09 -51.93 -0.42 -0.69 16 45 H 0.11 -0.21 8.09 -51.93 -0.42 -0.63 16 LS Contribution 363.90 15.07 5.48 5.48 Total: 0.00 -10.89 363.90 -9.44 -20.34 By element: Atomic # 1 Polarization: -6.06 SS G_CDS: -5.52 Total: -11.58 kcal Atomic # 6 Polarization: 3.63 SS G_CDS: -3.19 Total: 0.44 kcal Atomic # 7 Polarization: -0.45 SS G_CDS: -0.26 Total: -0.71 kcal Atomic # 8 Polarization: -6.26 SS G_CDS: -0.67 Total: -6.93 kcal Atomic # 14 Polarization: -1.75 SS G_CDS: -5.29 Total: -7.04 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -10.89 -9.44 -20.34 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_16915396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.612 kcal (2) G-P(sol) polarization free energy of solvation -10.893 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.505 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.444 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.336 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.948 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds