Wall clock time and date at job start Sat Mar 6 2021 22:41:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34785 * 1 3 3 O 1.21279 * 120.00076 * 2 1 4 4 C 1.50702 * 119.99735 * 180.02562 * 2 1 3 5 5 N 1.46501 * 112.85050 * 325.54759 * 4 2 1 6 6 C 1.34771 * 119.99968 * 298.34166 * 5 4 2 7 7 O 1.21633 * 119.99885 * 354.99811 * 6 5 4 8 8 C 1.47260 * 120.00186 * 174.99864 * 6 5 4 9 9 C 1.36342 * 126.96924 * 179.97438 * 8 6 5 10 10 C 1.50997 * 126.79157 * 0.06250 * 9 8 6 11 11 C 1.53393 * 108.25290 * 164.30303 * 10 9 8 12 12 C 1.53164 * 109.04631 * 48.46135 * 11 10 9 13 13 C 1.53136 * 109.52364 * 290.42968 * 12 11 10 14 14 N 1.35206 * 108.66042 * 180.02562 * 9 8 6 15 15 C 1.36431 * 109.90164 * 359.70456 * 14 9 8 16 16 C 1.50696 * 125.49871 * 180.30133 * 15 14 9 17 17 O 1.42901 * 109.47074 * 30.21517 * 16 15 14 18 18 Si 1.86305 * 109.47270 * 150.21168 * 16 15 14 19 19 C 1.34499 * 109.00886 * 0.46745 * 15 14 9 20 20 C 1.53772 * 113.61374 * 194.34905 * 4 2 1 21 21 C 1.54054 * 86.98583 * 219.98150 * 20 4 2 22 22 H 1.09008 * 113.61913 * 139.98029 * 21 20 4 23 23 O 1.42903 * 113.68727 * 270.87081 * 21 20 4 24 24 C 1.53778 * 87.07506 * 25.43325 * 21 20 4 25 25 H 0.97001 * 120.00105 * 175.08276 * 1 2 3 26 26 H 0.96993 * 119.99615 * 355.07635 * 1 2 3 27 27 H 0.97002 * 119.99825 * 118.34331 * 5 4 2 28 28 H 1.09002 * 109.70872 * 283.99296 * 10 9 8 29 29 H 1.09000 * 109.70784 * 44.61667 * 10 9 8 30 30 H 1.08997 * 109.54269 * 168.32871 * 11 10 9 31 31 H 1.08997 * 109.54406 * 288.50569 * 11 10 9 32 32 H 1.08997 * 109.45947 * 50.44192 * 12 11 10 33 33 H 1.08996 * 109.46400 * 170.41257 * 12 11 10 34 34 H 1.08993 * 109.56218 * 170.83000 * 13 12 11 35 35 H 1.09004 * 109.56050 * 291.05750 * 13 12 11 36 36 H 1.08997 * 109.47633 * 270.21963 * 16 15 14 37 37 H 0.96708 * 113.99659 * 59.99640 * 17 16 15 38 38 H 1.48496 * 110.00085 * 180.02562 * 18 16 15 39 39 H 1.48499 * 109.99908 * 301.32594 * 18 16 15 40 40 H 1.07997 * 126.81544 * 179.82642 * 19 15 14 41 41 H 1.09007 * 113.61727 * 334.48159 * 20 4 2 42 42 H 1.08999 * 113.61668 * 105.38813 * 20 4 2 43 43 H 0.96696 * 114.00217 * 277.52985 * 23 21 20 44 44 H 1.09004 * 113.60980 * 220.02107 * 24 21 20 45 45 H 1.09000 * 113.61539 * 89.12253 * 24 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3479 0.0000 0.0000 3 8 1.9543 1.0503 0.0000 4 6 2.1013 -1.3052 -0.0006 5 7 1.4216 -2.3548 0.7627 6 6 1.2033 -2.1939 2.0828 7 8 1.6499 -1.2202 2.6589 8 6 0.4242 -3.1971 2.8279 9 6 0.1198 -3.1773 4.1568 10 6 0.5145 -2.1194 5.1593 11 6 -0.3564 -2.2939 6.4100 12 6 -0.3460 -3.7684 6.8244 13 6 -1.1178 -4.5956 5.7923 14 7 -0.6093 -4.2775 4.4500 15 6 -0.7967 -5.0243 3.3237 16 6 -1.5649 -6.3186 3.2496 17 8 -2.6028 -6.3133 4.2319 18 14 -2.3156 -6.4991 1.5541 19 6 -0.1821 -4.4208 2.2907 20 6 3.5914 -1.1563 0.3487 21 6 3.8689 -2.2053 -0.7449 22 1 4.7523 -1.9873 -1.3451 23 8 3.8402 -3.5524 -0.2687 24 6 2.5525 -1.7553 -1.4001 25 1 -0.4850 -0.8370 -0.0720 26 1 -0.4849 0.8369 0.0721 27 1 1.1287 -3.1655 0.3179 28 1 1.5653 -2.2372 5.4237 29 1 0.3509 -1.1297 4.7328 30 1 0.0433 -1.6846 7.2205 31 1 -1.3775 -1.9831 6.1895 32 1 0.6832 -4.1233 6.8780 33 1 -0.8179 -3.8744 7.8012 34 1 -0.9751 -5.6570 5.9949 35 1 -2.1788 -4.3524 5.8494 36 1 -0.8899 -7.1532 3.4389 37 1 -3.2420 -5.5955 4.1249 38 1 -3.0765 -7.7714 1.4684 39 1 -3.2136 -5.3506 1.2714 40 1 -0.1458 -4.7659 1.2680 41 1 3.9970 -0.1705 0.1209 42 1 3.8402 -1.4955 1.3542 43 1 4.6654 -3.8412 0.1444 44 1 1.9631 -2.5777 -1.8054 45 1 2.6745 -0.9329 -2.1051 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_16915396.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:00 Heat of formation + Delta-G solvation = -84.560891 kcal Electronic energy + Delta-G solvation = -30978.299235 eV Core-core repulsion = 26770.460004 eV Total energy + Delta-G solvation = -4207.839232 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 336.156 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -42.82008 -42.01894 -39.67693 -39.03856 -38.05251 -36.88729 -35.99322 -34.71848 -33.80238 -33.32157 -31.15669 -29.51248 -27.09040 -26.95128 -26.36342 -24.64176 -24.03692 -22.29238 -21.70315 -21.24923 -20.29194 -19.65629 -19.00251 -18.96421 -17.95359 -17.80689 -17.27987 -17.01683 -16.73738 -16.49935 -15.95621 -15.67145 -15.63979 -15.44216 -15.37302 -15.30339 -15.15898 -14.89516 -14.68832 -14.48455 -14.30263 -13.88512 -13.64781 -13.44465 -13.20541 -13.08134 -12.74505 -12.45924 -12.38639 -12.15872 -12.03769 -11.86599 -11.76891 -11.62245 -11.37395 -10.99036 -10.87899 -10.77097 -10.67406 -10.03375 -9.55798 -9.03957 -4.86752 0.70892 1.08753 1.41894 1.46486 1.70605 1.78667 2.03621 2.27200 2.43323 2.63030 3.08452 3.23774 3.39069 3.47538 3.54227 3.57576 3.66550 3.75826 3.77617 3.79174 3.94548 4.18573 4.28378 4.34452 4.36507 4.44678 4.54592 4.63399 4.67366 4.74029 4.75568 4.77291 4.81501 4.89279 4.92750 4.95484 4.97799 4.99764 5.16045 5.17539 5.46377 5.74726 5.80100 6.03213 6.21237 6.34928 6.37741 6.66154 6.88740 7.22786 7.36056 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.835 5.835 2 C 0.526 3.474 3 O -0.585 6.585 4 C 0.132 3.868 5 N -0.680 5.680 6 C 0.594 3.406 7 O -0.580 6.580 8 C -0.250 4.250 9 C 0.103 3.897 10 C -0.053 4.053 11 C -0.124 4.124 12 C -0.134 4.134 13 C 0.105 3.895 14 N -0.428 5.428 15 C -0.017 4.017 16 C -0.057 4.057 17 O -0.546 6.546 18 Si 0.803 3.197 19 C -0.155 4.155 20 C -0.162 4.162 21 C 0.095 3.905 22 H 0.095 0.905 23 O -0.553 6.553 24 C -0.108 4.108 25 H 0.413 0.587 26 H 0.404 0.596 27 H 0.422 0.578 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.086 0.914 31 H 0.068 0.932 32 H 0.068 0.932 33 H 0.107 0.893 34 H 0.098 0.902 35 H 0.093 0.907 36 H 0.129 0.871 37 H 0.384 0.616 38 H -0.300 1.300 39 H -0.287 1.287 40 H 0.186 0.814 41 H 0.092 0.908 42 H 0.063 0.937 43 H 0.397 0.603 44 H 0.117 0.883 45 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.182 -6.898 -2.199 7.562 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.397 5.397 2 C 0.310 3.690 3 O -0.464 6.464 4 C 0.041 3.959 5 N -0.334 5.334 6 C 0.385 3.615 7 O -0.461 6.461 8 C -0.260 4.260 9 C -0.016 4.016 10 C -0.091 4.091 11 C -0.161 4.161 12 C -0.172 4.172 13 C -0.015 4.015 14 N -0.104 5.104 15 C -0.125 4.125 16 C -0.165 4.165 17 O -0.353 6.353 18 Si 0.706 3.294 19 C -0.179 4.179 20 C -0.201 4.201 21 C 0.036 3.964 22 H 0.113 0.887 23 O -0.360 6.360 24 C -0.146 4.146 25 H 0.244 0.756 26 H 0.235 0.765 27 H 0.261 0.739 28 H 0.095 0.905 29 H 0.096 0.904 30 H 0.104 0.896 31 H 0.087 0.913 32 H 0.086 0.914 33 H 0.125 0.875 34 H 0.116 0.884 35 H 0.111 0.889 36 H 0.147 0.853 37 H 0.234 0.766 38 H -0.227 1.227 39 H -0.214 1.214 40 H 0.203 0.797 41 H 0.110 0.890 42 H 0.082 0.918 43 H 0.247 0.753 44 H 0.135 0.865 45 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -2.519 -6.370 -1.950 7.122 hybrid contribution -0.644 0.536 1.303 1.549 sum -3.162 -5.833 -0.647 6.667 Atomic orbital electron populations 1.43700 1.06593 1.13808 1.75643 1.20921 0.83407 0.90974 0.73717 1.90715 1.69343 1.34555 1.51766 1.21370 0.92419 0.85471 0.96614 1.45122 1.59846 1.20836 1.07604 1.17572 0.78154 0.84271 0.81525 1.90807 1.52759 1.33147 1.69374 1.19843 1.12410 1.00278 0.93475 1.20483 0.96238 0.90198 0.94649 1.20401 1.00096 0.95655 0.92978 1.21687 1.00283 0.96927 0.97215 1.21922 1.01415 0.94503 0.99344 1.22233 0.99295 1.01614 0.78312 1.44011 1.40231 1.17254 1.08884 1.20993 1.07413 0.97802 0.86332 1.25068 0.91154 0.94817 1.05502 1.86573 1.40512 1.55974 1.52260 0.93492 0.83394 0.76194 0.76314 1.22007 1.02188 0.94108 0.99560 1.23947 0.93580 1.01587 1.01033 1.22610 0.98600 0.81778 0.93439 0.88726 1.86358 1.42936 1.26518 1.80218 1.23329 0.96289 1.02802 0.92140 0.75650 0.76525 0.73913 0.90519 0.90423 0.89570 0.91290 0.91372 0.87504 0.88371 0.88870 0.85338 0.76643 1.22747 1.21378 0.79694 0.88958 0.91812 0.75259 0.86470 0.86283 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -1.23 8.78 -173.52 -1.52 -2.75 16 2 C 0.53 4.38 6.47 87.66 0.57 4.95 16 3 O -0.58 -10.37 16.76 -3.03 -0.05 -10.42 16 4 C 0.13 0.34 0.95 3.38 0.00 0.35 16 5 N -0.68 0.06 4.16 -427.31 -1.78 -1.71 16 6 C 0.59 3.96 7.36 86.62 0.64 4.59 16 7 O -0.58 -8.85 14.06 -4.14 -0.06 -8.91 16 8 C -0.25 -0.99 6.28 -19.12 -0.12 -1.11 16 9 C 0.10 0.46 6.57 41.69 0.27 0.73 16 10 C -0.05 -0.24 5.32 30.07 0.16 -0.08 16 11 C -0.12 0.16 5.98 30.78 0.18 0.34 16 12 C -0.13 0.52 5.92 30.69 0.18 0.70 16 13 C 0.11 -0.35 5.32 86.33 0.46 0.11 16 14 N -0.43 -0.21 3.11 -493.60 -1.54 -1.74 16 15 C -0.02 0.03 6.15 40.99 0.25 0.28 16 16 C -0.06 0.27 2.99 71.23 0.21 0.48 16 17 O -0.55 1.54 10.70 -148.98 -1.59 -0.06 16 18 Si 0.80 -5.01 31.11 68.60 2.13 -2.88 16 19 C -0.16 0.39 9.09 23.64 0.21 0.61 16 20 C -0.16 -0.81 6.72 31.21 0.21 -0.60 16 21 C 0.10 -0.27 5.28 31.21 0.16 -0.10 16 22 H 0.09 -0.55 8.14 -2.38 -0.02 -0.57 16 23 O -0.55 2.12 13.10 -148.98 -1.95 0.17 16 24 C -0.11 0.43 7.18 31.12 0.22 0.65 16 25 H 0.41 -1.72 8.42 -92.71 -0.78 -2.50 16 26 H 0.40 0.29 8.93 -92.71 -0.83 -0.54 16 27 H 0.42 -2.54 7.78 -92.71 -0.72 -3.26 16 28 H 0.08 0.46 8.14 -2.39 -0.02 0.44 16 29 H 0.08 0.66 7.40 -2.39 -0.02 0.64 16 30 H 0.09 -0.23 8.14 -2.39 -0.02 -0.25 16 31 H 0.07 -0.09 8.12 -2.39 -0.02 -0.11 16 32 H 0.07 -0.14 8.11 -2.39 -0.02 -0.16 16 33 H 0.11 -0.79 8.14 -2.39 -0.02 -0.81 16 34 H 0.10 -0.33 7.72 -2.39 -0.02 -0.35 16 35 H 0.09 -0.51 7.93 -2.38 -0.02 -0.52 16 36 H 0.13 -0.78 7.96 -2.39 -0.02 -0.80 16 37 H 0.38 -2.72 8.64 -74.05 -0.64 -3.36 16 38 H -0.30 -0.41 7.11 99.48 0.71 0.30 16 39 H -0.29 0.30 7.11 99.48 0.71 1.01 16 40 H 0.19 -1.92 6.53 -2.91 -0.02 -1.94 16 41 H 0.09 0.77 7.34 -2.38 -0.02 0.76 16 42 H 0.06 0.60 7.56 -2.39 -0.02 0.58 16 43 H 0.40 -3.70 9.12 -74.06 -0.68 -4.38 16 44 H 0.12 -1.00 8.09 -2.39 -0.02 -1.02 16 45 H 0.12 -0.53 8.09 -2.39 -0.02 -0.55 16 Total: 0.00 -28.53 363.90 -5.25 -33.78 By element: Atomic # 1 Polarization: -14.87 SS G_CDS: -2.52 Total: -17.38 kcal Atomic # 6 Polarization: 8.28 SS G_CDS: 3.62 Total: 11.91 kcal Atomic # 7 Polarization: -1.37 SS G_CDS: -4.84 Total: -6.21 kcal Atomic # 8 Polarization: -15.56 SS G_CDS: -3.65 Total: -19.21 kcal Atomic # 14 Polarization: -5.01 SS G_CDS: 2.13 Total: -2.88 kcal Total: -28.53 -5.25 -33.78 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_16915396.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.784 kcal (2) G-P(sol) polarization free energy of solvation -28.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -79.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.777 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.561 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds