Wall clock time and date at job start Sat Mar 6 2021 22:41:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34781 * 1 3 3 O 1.21279 * 119.99885 * 2 1 4 4 C 1.50694 * 120.00042 * 180.02562 * 2 1 3 5 5 N 1.46502 * 112.85080 * 35.44781 * 4 2 1 6 6 C 1.34777 * 120.00187 * 57.78880 * 5 4 2 7 7 O 1.21279 * 119.99532 * 354.86046 * 6 5 4 8 8 C 1.50697 * 120.00081 * 174.85929 * 6 5 4 9 9 O 1.42899 * 109.47170 * 180.02562 * 8 6 5 10 10 C 1.35898 * 117.00094 * 179.97438 * 9 8 6 11 11 C 1.38707 * 120.05585 * 179.97438 * 10 9 8 12 12 C 1.50705 * 120.02851 * 359.96255 * 11 10 9 13 13 O 1.42898 * 109.47251 * 74.99448 * 12 11 10 14 14 Si 1.86302 * 109.47118 * 194.99687 * 12 11 10 15 15 C 1.38171 * 119.94307 * 180.22920 * 11 10 9 16 16 C 1.38243 * 120.05276 * 359.47978 * 15 11 10 17 17 C 1.38287 * 120.11355 * 0.54728 * 16 15 11 18 18 C 1.38123 * 120.05203 * 359.70349 * 17 16 15 19 19 C 1.53781 * 113.61344 * 264.24983 * 4 2 1 20 20 C 1.53781 * 87.08144 * 270.79922 * 19 4 2 21 21 H 1.08994 * 113.61022 * 89.20321 * 20 19 4 22 22 O 1.42899 * 113.61264 * 220.01672 * 20 19 4 23 23 C 1.53784 * 113.61497 * 166.64445 * 4 2 1 24 24 H 0.96991 * 120.00040 * 174.98909 * 1 2 3 25 25 H 0.97003 * 119.99984 * 354.99393 * 1 2 3 26 26 H 0.97002 * 119.99975 * 237.79611 * 5 4 2 27 27 H 1.08996 * 109.47118 * 59.99985 * 8 6 5 28 28 H 1.09003 * 109.47199 * 300.00322 * 8 6 5 29 29 H 1.08998 * 109.46467 * 314.99286 * 12 11 10 30 30 H 0.96700 * 113.99529 * 179.97438 * 13 12 11 31 31 H 1.48501 * 109.99969 * 299.99845 * 14 12 11 32 32 H 1.48503 * 110.00168 * 61.31598 * 14 12 11 33 33 H 1.08006 * 119.96818 * 179.74764 * 15 11 10 34 34 H 1.08008 * 119.93794 * 180.29546 * 16 15 11 35 35 H 1.08003 * 119.96884 * 179.72910 * 17 16 15 36 36 H 1.08004 * 120.02301 * 180.02562 * 18 17 16 37 37 H 1.08997 * 113.61526 * 25.35099 * 19 4 2 38 38 H 1.09001 * 113.61274 * 156.25108 * 19 4 2 39 39 H 0.96705 * 113.99811 * 180.02562 * 22 20 19 40 40 H 1.08994 * 113.61211 * 203.74785 * 23 4 2 41 41 H 1.09003 * 113.61268 * 334.65177 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3050 -0.0006 5 7 1.4333 -2.3473 -0.7840 6 6 1.1649 -2.1418 -2.0887 7 8 1.3910 -1.0616 -2.5914 8 6 0.5839 -3.2544 -2.9228 9 8 0.3909 -2.7948 -4.2620 10 6 -0.1292 -3.6824 -5.1500 11 6 -0.3435 -3.3031 -6.4668 12 6 -0.0004 -1.9056 -6.9145 13 8 1.4174 -1.7808 -7.0422 14 14 -0.8045 -1.5657 -8.5603 15 6 -0.8768 -4.2060 -7.3666 16 6 -1.1868 -5.4897 -6.9578 17 6 -0.9747 -5.8701 -5.6453 18 6 -0.4465 -4.9697 -4.7409 19 6 2.5316 -1.7685 1.4012 20 6 3.8238 -0.9635 1.1848 21 1 3.7514 0.0741 1.5105 22 8 4.9952 -1.6186 1.6753 23 6 3.5966 -1.1529 -0.3260 24 1 -0.4850 -0.8368 -0.0734 25 1 -0.4850 0.8369 0.0733 26 1 1.1841 -3.1853 -0.3637 27 1 -0.3735 -3.5619 -2.5022 28 1 1.2688 -4.1024 -2.9252 29 1 -0.3633 -1.1889 -6.1778 30 1 1.7109 -0.9049 -7.3281 31 1 -0.3180 -2.5363 -9.5734 32 1 -2.2810 -1.6610 -8.4335 33 1 -1.0476 -3.9098 -8.3911 34 1 -1.5992 -6.1954 -7.6638 35 1 -1.2218 -6.8723 -5.3274 36 1 -0.2807 -5.2675 -3.7160 37 1 1.9032 -1.3788 2.2019 38 1 2.6942 -2.8438 1.4747 39 1 5.8112 -1.1169 1.5425 40 1 4.0509 -2.0596 -0.7255 41 1 3.8267 -0.2668 -0.9176 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_2989392.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:03 Heat of formation + Delta-G solvation = -127.095759 kcal Electronic energy + Delta-G solvation = -27814.785187 eV Core-core repulsion = 23662.920462 eV Total energy + Delta-G solvation = -4151.864725 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.41555 -41.52200 -40.17250 -39.04647 -38.48652 -37.51329 -36.47410 -34.89081 -34.09512 -32.95612 -31.38844 -29.59722 -27.10669 -26.70646 -26.35286 -23.90102 -23.05291 -22.55390 -21.58755 -20.55367 -19.52520 -19.18733 -18.45996 -18.38230 -18.32594 -17.85088 -17.39902 -17.20354 -16.92286 -16.72539 -15.93885 -15.87426 -15.62350 -15.60162 -15.39654 -15.07722 -14.93889 -14.73429 -14.11269 -13.85479 -13.79965 -13.62761 -13.55172 -13.41746 -13.06527 -12.74400 -12.56721 -12.21038 -12.04092 -11.96085 -11.83226 -11.47130 -11.20785 -10.89312 -10.82090 -10.35994 -10.28661 -10.10833 -9.33415 -4.98612 0.08475 0.28071 1.15224 1.25865 1.28389 1.45475 1.58675 1.87780 2.29186 2.41006 2.55030 3.13437 3.17415 3.30141 3.40999 3.47076 3.65313 3.68157 3.77960 3.85137 3.94355 4.02916 4.05935 4.10502 4.15586 4.22391 4.40010 4.52908 4.53671 4.61131 4.72817 4.79737 4.84364 4.85505 5.14713 5.15426 5.23377 5.37505 5.60204 5.70910 6.13649 6.24033 6.34621 6.74602 6.82905 6.98291 7.12405 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.536 3.464 3 O -0.577 6.577 4 C 0.133 3.867 5 N -0.692 5.692 6 C 0.513 3.487 7 O -0.549 6.549 8 C 0.035 3.965 9 O -0.308 6.308 10 C 0.135 3.865 11 C -0.137 4.137 12 C -0.077 4.077 13 O -0.563 6.563 14 Si 0.776 3.224 15 C -0.106 4.106 16 C -0.158 4.158 17 C -0.072 4.072 18 C -0.205 4.205 19 C -0.098 4.098 20 C 0.082 3.918 21 H 0.083 0.917 22 O -0.566 6.566 23 C -0.157 4.157 24 H 0.413 0.587 25 H 0.409 0.591 26 H 0.431 0.569 27 H 0.134 0.866 28 H 0.123 0.877 29 H 0.065 0.935 30 H 0.396 0.604 31 H -0.282 1.282 32 H -0.284 1.284 33 H 0.123 0.877 34 H 0.147 0.853 35 H 0.162 0.838 36 H 0.168 0.832 37 H 0.102 0.898 38 H 0.136 0.864 39 H 0.398 0.602 40 H 0.107 0.893 41 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.956 -6.146 3.912 8.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.393 5.393 2 C 0.319 3.681 3 O -0.456 6.456 4 C 0.042 3.958 5 N -0.351 5.351 6 C 0.299 3.701 7 O -0.425 6.425 8 C -0.043 4.043 9 O -0.220 6.220 10 C 0.089 3.911 11 C -0.138 4.138 12 C -0.186 4.186 13 O -0.372 6.372 14 Si 0.680 3.320 15 C -0.123 4.123 16 C -0.176 4.176 17 C -0.090 4.090 18 C -0.223 4.223 19 C -0.135 4.135 20 C 0.022 3.978 21 H 0.101 0.899 22 O -0.374 6.374 23 C -0.196 4.196 24 H 0.244 0.756 25 H 0.240 0.760 26 H 0.272 0.728 27 H 0.152 0.848 28 H 0.141 0.859 29 H 0.083 0.917 30 H 0.246 0.754 31 H -0.209 1.209 32 H -0.211 1.211 33 H 0.140 0.860 34 H 0.164 0.836 35 H 0.180 0.820 36 H 0.185 0.815 37 H 0.120 0.880 38 H 0.154 0.846 39 H 0.248 0.752 40 H 0.126 0.874 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -4.153 -5.975 3.251 7.970 hybrid contribution -0.053 -0.002 0.228 0.234 sum -4.206 -5.977 3.480 8.095 Atomic orbital electron populations 1.43571 1.06185 1.14102 1.75456 1.20233 0.83577 0.90081 0.74164 1.90748 1.69251 1.34184 1.51380 1.21384 0.92089 0.86532 0.95749 1.45526 1.61458 1.19751 1.08352 1.20626 0.77827 0.88892 0.82716 1.90843 1.51841 1.27535 1.72235 1.22762 1.04806 0.95827 0.80908 1.86163 1.78212 1.38371 1.19272 1.18932 0.93790 0.89389 0.88951 1.19032 1.05938 0.96542 0.92281 1.24818 0.87364 0.95022 1.11386 1.86441 1.20062 1.38937 1.91781 0.94165 0.76095 0.87376 0.74335 1.21004 0.98673 0.94455 0.98203 1.21370 1.02771 0.95643 0.97864 1.21434 0.94856 1.00497 0.92229 1.21694 1.05607 0.92061 1.02980 1.23316 0.94309 1.03935 0.91989 1.23105 0.86568 0.96340 0.91782 0.89921 1.86424 1.17956 1.49529 1.83474 1.23983 0.93208 1.03330 0.99070 0.75647 0.75964 0.72788 0.84848 0.85934 0.91720 0.75419 1.20938 1.21132 0.85991 0.83558 0.82040 0.81462 0.87966 0.84635 0.75191 0.87422 0.92514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 1.26 8.77 -173.53 -1.52 -0.26 16 2 C 0.54 2.97 5.82 87.65 0.51 3.48 16 3 O -0.58 -8.80 16.20 -3.02 -0.05 -8.85 16 4 C 0.13 -0.12 1.10 3.38 0.00 -0.11 16 5 N -0.69 4.80 4.70 -423.93 -1.99 2.81 16 6 C 0.51 0.24 7.57 87.66 0.66 0.90 16 7 O -0.55 -7.01 15.45 16.01 0.25 -6.76 16 8 C 0.03 -0.16 5.22 71.23 0.37 0.22 16 9 O -0.31 -2.00 9.00 -73.36 -0.66 -2.66 16 10 C 0.14 0.79 6.66 22.50 0.15 0.94 16 11 C -0.14 -1.20 5.31 -19.77 -0.10 -1.30 16 12 C -0.08 -0.54 2.37 71.24 0.17 -0.37 16 13 O -0.56 -4.75 12.86 -148.98 -1.92 -6.66 16 14 Si 0.78 1.71 30.19 68.60 2.07 3.78 16 15 C -0.11 -0.71 8.66 22.25 0.19 -0.52 16 16 C -0.16 -0.32 10.04 22.28 0.22 -0.09 16 17 C -0.07 0.12 10.04 22.25 0.22 0.34 16 18 C -0.21 0.24 9.04 22.36 0.20 0.45 16 19 C -0.10 0.52 7.19 31.12 0.22 0.75 16 20 C 0.08 0.04 4.82 31.18 0.15 0.20 16 21 H 0.08 0.27 7.61 -2.39 -0.02 0.25 16 22 O -0.57 -0.07 13.67 -148.98 -2.04 -2.11 16 23 C -0.16 -0.49 6.90 31.18 0.22 -0.28 16 24 H 0.41 -3.20 8.31 -92.71 -0.77 -3.97 16 25 H 0.41 -0.90 8.93 -92.71 -0.83 -1.72 16 26 H 0.43 -6.98 8.67 -92.71 -0.80 -7.78 16 27 H 0.13 -1.69 7.66 -2.39 -0.02 -1.71 16 28 H 0.12 -1.19 7.66 -2.39 -0.02 -1.21 16 29 H 0.06 0.49 7.83 -2.39 -0.02 0.47 16 30 H 0.40 -0.42 8.74 -74.06 -0.65 -1.07 16 31 H -0.28 -2.02 6.76 99.48 0.67 -1.35 16 32 H -0.28 -1.91 7.11 99.48 0.71 -1.21 16 33 H 0.12 0.77 4.90 -2.91 -0.01 0.76 16 34 H 0.15 -0.36 8.06 -2.91 -0.02 -0.38 16 35 H 0.16 -1.32 8.06 -2.91 -0.02 -1.34 16 36 H 0.17 -1.60 6.30 -2.91 -0.02 -1.62 16 37 H 0.10 -0.74 8.09 -2.39 -0.02 -0.76 16 38 H 0.14 -1.32 8.14 -2.39 -0.02 -1.34 16 39 H 0.40 -2.48 9.12 -74.05 -0.68 -3.16 16 40 H 0.11 0.15 8.14 -2.39 -0.02 0.13 16 41 H 0.06 0.59 7.64 -2.39 -0.02 0.57 16 Total: 0.00 -37.31 349.30 -5.24 -42.54 By element: Atomic # 1 Polarization: -23.85 SS G_CDS: -2.58 Total: -26.43 kcal Atomic # 6 Polarization: 1.39 SS G_CDS: 3.19 Total: 4.58 kcal Atomic # 7 Polarization: 6.07 SS G_CDS: -3.51 Total: 2.55 kcal Atomic # 8 Polarization: -22.62 SS G_CDS: -4.41 Total: -27.04 kcal Atomic # 14 Polarization: 1.71 SS G_CDS: 2.07 Total: 3.78 kcal Total: -37.31 -5.24 -42.54 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_2989392.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.553 kcal (2) G-P(sol) polarization free energy of solvation -37.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -121.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds