Wall clock time and date at job start Sat Mar 6 2021 22:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.34782 * 1 3 3 O 1.21278 * 119.99769 * 2 1 4 4 C 1.50700 * 119.99852 * 179.97438 * 2 1 3 5 5 N 1.46495 * 112.90643 * 25.18336 * 4 2 1 6 6 C 1.34775 * 120.00430 * 66.38803 * 5 4 2 7 7 O 1.21285 * 119.99855 * 4.99575 * 6 5 4 8 8 C 1.50703 * 119.99965 * 185.00270 * 6 5 4 9 9 O 1.42903 * 109.46853 * 179.97438 * 8 6 5 10 10 C 1.35902 * 116.99856 * 179.97438 * 9 8 6 11 11 C 1.38734 * 120.05487 * 359.72662 * 10 9 8 12 12 C 1.38143 * 119.93955 * 179.69890 * 11 10 9 13 13 C 1.38263 * 120.05740 * 0.60032 * 12 11 10 14 14 C 1.50705 * 119.94436 * 179.69876 * 13 12 11 15 15 O 1.42899 * 109.46838 * 119.97814 * 14 13 12 16 16 Si 1.86296 * 109.47079 * 359.97438 * 14 13 12 17 17 C 1.38269 * 120.11214 * 359.67420 * 13 12 11 18 18 C 1.38140 * 120.05209 * 0.02796 * 17 13 12 19 19 C 1.53956 * 113.61222 * 253.85415 * 4 2 1 20 20 C 1.53782 * 87.11124 * 270.84526 * 19 4 2 21 21 H 1.09003 * 113.61866 * 89.18862 * 20 19 4 22 22 O 1.42898 * 113.61462 * 220.09531 * 20 19 4 23 23 C 1.53778 * 113.60970 * 156.43152 * 4 2 1 24 24 H 0.97001 * 120.00070 * 175.01516 * 1 2 3 25 25 H 0.97001 * 120.00242 * 355.00430 * 1 2 3 26 26 H 0.97005 * 119.99840 * 246.38412 * 5 4 2 27 27 H 1.08997 * 109.46827 * 299.99637 * 8 6 5 28 28 H 1.08997 * 109.47277 * 59.99677 * 8 6 5 29 29 H 1.08000 * 120.02506 * 359.97438 * 11 10 9 30 30 H 1.07999 * 119.97070 * 180.27045 * 12 11 10 31 31 H 1.08998 * 109.46646 * 239.97357 * 14 13 12 32 32 H 0.96703 * 114.00251 * 180.02562 * 15 14 13 33 33 H 1.48500 * 110.00083 * 298.68063 * 16 14 13 34 34 H 1.48501 * 109.99943 * 59.99975 * 16 14 13 35 35 H 1.07997 * 119.97305 * 180.02562 * 17 13 12 36 36 H 1.08002 * 120.02826 * 179.97438 * 18 17 13 37 37 H 1.08993 * 113.53422 * 156.29689 * 19 4 2 38 38 H 1.08991 * 113.66885 * 25.41248 * 19 4 2 39 39 H 0.96704 * 113.99412 * 277.49204 * 22 20 19 40 40 H 1.08996 * 113.61730 * 334.56768 * 23 4 2 41 41 H 1.08998 * 113.61527 * 203.75142 * 23 4 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3478 0.0000 0.0000 3 8 1.9542 1.0503 0.0000 4 6 2.1013 -1.3051 0.0006 5 7 1.3288 -2.4097 -0.5731 6 6 1.0096 -2.4003 -1.8825 7 8 1.4377 -1.5250 -2.6047 8 6 0.1206 -3.4772 -2.4492 9 8 -0.0704 -3.2504 -3.8471 10 6 -0.8528 -4.1385 -4.5149 11 6 -1.4203 -5.2095 -3.8398 12 6 -2.2203 -6.1073 -4.5197 13 6 -2.4456 -5.9463 -5.8743 14 6 -3.3132 -6.9312 -6.6149 15 8 -4.4301 -6.2466 -7.1859 16 14 -3.9225 -8.2346 -5.4314 17 6 -1.8765 -4.8830 -6.5506 18 6 -1.0808 -3.9790 -5.8740 19 6 2.7493 -1.6424 1.3558 20 6 3.9860 -0.8689 0.8689 21 1 3.9573 0.1946 1.1063 22 8 5.2245 -1.4855 1.2268 23 6 3.5277 -1.1930 -0.5629 24 1 -0.4850 -0.8369 -0.0730 25 1 -0.4850 0.8368 0.0732 26 1 1.0470 -3.1481 -0.0106 27 1 0.5881 -4.4504 -2.2991 28 1 -0.8443 -3.4556 -1.9427 29 1 -1.2404 -5.3385 -2.7827 30 1 -2.6659 -6.9387 -3.9937 31 1 -2.7323 -7.4029 -7.4074 32 1 -5.0331 -6.8202 -7.6784 33 1 -2.7715 -8.9750 -4.8549 34 1 -4.7159 -7.6041 -4.3460 35 1 -2.0543 -4.7592 -7.6086 36 1 -0.6361 -3.1488 -6.4027 37 1 2.9293 -2.7078 1.4990 38 1 2.2511 -1.1781 2.2067 39 1 5.5179 -1.2852 2.1262 40 1 3.6578 -0.3659 -1.2608 41 1 3.9216 -2.1349 -0.9447 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_2989410.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:06 Heat of formation + Delta-G solvation = -128.285119 kcal Electronic energy + Delta-G solvation = -27037.001836 eV Core-core repulsion = 22885.085537 eV Total energy + Delta-G solvation = -4151.916299 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 323.129 amu Computer time = 0.70 seconds Orbital eigenvalues (eV) -42.46878 -41.49130 -40.25878 -39.13359 -38.86669 -37.20349 -36.51100 -35.02349 -34.08686 -32.54859 -31.91627 -29.83858 -27.18172 -26.59874 -26.03414 -24.22809 -23.16878 -22.33792 -21.69980 -20.61555 -19.68937 -19.23566 -18.61113 -18.41200 -18.29512 -17.74883 -17.48433 -17.23336 -16.82587 -16.70874 -16.22788 -15.87257 -15.70932 -15.65246 -15.37290 -15.20699 -14.76588 -14.55845 -14.14717 -13.93264 -13.86574 -13.67986 -13.58968 -13.48703 -13.36152 -12.72374 -12.50541 -12.21408 -12.09630 -11.88054 -11.83975 -11.61031 -11.13298 -10.99674 -10.89128 -10.42701 -10.28904 -10.18269 -9.32575 -4.90335 0.11844 0.17415 1.12342 1.23911 1.32602 1.33554 1.67010 1.97737 2.23037 2.36907 2.50804 3.05376 3.16156 3.29226 3.40899 3.46388 3.54372 3.59401 3.73695 3.77995 3.90408 3.96390 3.98834 4.09943 4.14240 4.31802 4.41266 4.50150 4.55920 4.59446 4.71290 4.77033 4.81072 4.82980 5.03306 5.08425 5.12610 5.37170 5.55223 5.64578 6.08701 6.17148 6.29183 6.80292 6.92828 6.93214 7.05468 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.830 5.830 2 C 0.531 3.469 3 O -0.574 6.574 4 C 0.132 3.868 5 N -0.693 5.693 6 C 0.512 3.488 7 O -0.552 6.552 8 C 0.035 3.965 9 O -0.315 6.315 10 C 0.123 3.877 11 C -0.199 4.199 12 C -0.099 4.099 13 C -0.129 4.129 14 C -0.079 4.079 15 O -0.566 6.566 16 Si 0.774 3.226 17 C -0.057 4.057 18 C -0.162 4.162 19 C -0.127 4.127 20 C 0.080 3.920 21 H 0.086 0.914 22 O -0.570 6.570 23 C -0.117 4.117 24 H 0.413 0.587 25 H 0.410 0.590 26 H 0.432 0.568 27 H 0.128 0.872 28 H 0.134 0.866 29 H 0.166 0.834 30 H 0.127 0.873 31 H 0.090 0.910 32 H 0.403 0.597 33 H -0.284 1.284 34 H -0.294 1.294 35 H 0.143 0.857 36 H 0.134 0.866 37 H 0.136 0.864 38 H 0.102 0.898 39 H 0.400 0.600 40 H 0.054 0.946 41 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.904 -9.841 4.910 12.482 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.394 5.394 2 C 0.314 3.686 3 O -0.452 6.452 4 C 0.042 3.958 5 N -0.352 5.352 6 C 0.299 3.701 7 O -0.428 6.428 8 C -0.043 4.043 9 O -0.229 6.229 10 C 0.078 3.922 11 C -0.217 4.217 12 C -0.116 4.116 13 C -0.129 4.129 14 C -0.189 4.189 15 O -0.376 6.376 16 Si 0.679 3.321 17 C -0.075 4.075 18 C -0.180 4.180 19 C -0.165 4.165 20 C 0.021 3.979 21 H 0.104 0.896 22 O -0.378 6.378 23 C -0.156 4.156 24 H 0.244 0.756 25 H 0.242 0.758 26 H 0.273 0.727 27 H 0.146 0.854 28 H 0.151 0.849 29 H 0.183 0.817 30 H 0.144 0.856 31 H 0.108 0.892 32 H 0.254 0.746 33 H -0.212 1.212 34 H -0.221 1.221 35 H 0.161 0.839 36 H 0.152 0.848 37 H 0.154 0.846 38 H 0.121 0.879 39 H 0.251 0.749 40 H 0.073 0.927 41 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -4.742 -8.486 4.806 10.844 hybrid contribution -0.050 0.634 0.456 0.783 sum -4.791 -7.852 5.262 10.597 Atomic orbital electron populations 1.43609 1.06172 1.14238 1.75350 1.20332 0.83670 0.90131 0.74452 1.90766 1.69211 1.33979 1.51264 1.21399 0.90215 0.85164 0.99029 1.45521 1.56429 1.24448 1.08779 1.20684 0.80805 0.86224 0.82426 1.90843 1.53272 1.39170 1.59466 1.22786 1.01960 0.98836 0.80710 1.86137 1.65254 1.49103 1.22369 1.19100 0.91602 0.89373 0.92102 1.21415 1.02332 0.95802 1.02134 1.20882 0.98187 0.98891 0.93654 1.19690 1.00735 0.98542 0.93956 1.24844 0.90010 0.99691 1.04338 1.86442 1.37399 1.39897 1.73880 0.94236 0.80994 0.78889 0.77951 1.20981 0.93561 0.92170 1.00808 1.20716 1.02828 1.02323 0.92168 1.23931 0.94817 1.04726 0.92985 1.23126 0.83577 0.96424 0.94819 0.89632 1.86485 1.38817 1.74274 1.38246 1.23233 0.92297 1.03051 0.97036 0.75615 0.75780 0.72708 0.85395 0.84896 0.81677 0.85552 0.89187 0.74635 1.21161 1.22119 0.83913 0.84826 0.84600 0.87928 0.74943 0.92694 0.88169 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 1.81 8.77 -173.53 -1.52 0.29 16 2 C 0.53 2.71 6.69 87.66 0.59 3.30 16 3 O -0.57 -8.33 16.08 -3.02 -0.05 -8.37 16 4 C 0.13 -0.06 1.12 3.44 0.00 -0.06 16 5 N -0.69 4.80 4.44 -423.66 -1.88 2.92 16 6 C 0.51 0.17 7.31 87.66 0.64 0.81 16 7 O -0.55 -7.19 15.55 15.99 0.25 -6.94 16 8 C 0.03 -0.18 5.22 71.24 0.37 0.19 16 9 O -0.32 -1.66 9.67 -73.41 -0.71 -2.37 16 10 C 0.12 0.55 6.69 22.51 0.15 0.70 16 11 C -0.20 -0.05 9.04 22.37 0.20 0.16 16 12 C -0.10 -0.26 8.66 22.25 0.19 -0.07 16 13 C -0.13 -0.51 5.42 -19.85 -0.11 -0.61 16 14 C -0.08 0.11 2.81 71.24 0.20 0.31 16 15 O -0.57 0.41 12.74 -148.98 -1.90 -1.48 16 16 Si 0.77 -2.99 29.78 68.60 2.04 -0.95 16 17 C -0.06 -0.27 9.60 22.25 0.21 -0.06 16 18 C -0.16 -0.98 9.99 22.36 0.22 -0.76 16 19 C -0.13 0.76 7.22 31.18 0.23 0.99 16 20 C 0.08 0.13 4.81 31.12 0.15 0.28 16 21 H 0.09 0.38 7.32 -2.39 -0.02 0.36 16 22 O -0.57 -0.72 13.67 -148.98 -2.04 -2.76 16 23 C -0.12 -0.70 6.15 31.12 0.19 -0.51 16 24 H 0.41 -3.44 7.88 -92.71 -0.73 -4.17 16 25 H 0.41 -1.25 8.93 -92.71 -0.83 -2.08 16 26 H 0.43 -7.08 8.71 -92.70 -0.81 -7.89 16 27 H 0.13 -1.45 7.65 -2.39 -0.02 -1.47 16 28 H 0.13 -1.68 7.68 -2.39 -0.02 -1.70 16 29 H 0.17 -1.31 6.30 -2.91 -0.02 -1.33 16 30 H 0.13 0.09 4.87 -2.91 -0.01 0.08 16 31 H 0.09 -0.44 7.96 -2.39 -0.02 -0.46 16 32 H 0.40 -4.52 8.74 -74.06 -0.65 -5.17 16 33 H -0.28 -0.22 7.11 99.48 0.71 0.49 16 34 H -0.29 -0.89 7.11 99.48 0.71 -0.19 16 35 H 0.14 0.32 8.06 -2.91 -0.02 0.29 16 36 H 0.13 0.75 8.06 -2.91 -0.02 0.73 16 37 H 0.14 -1.45 8.14 -2.39 -0.02 -1.47 16 38 H 0.10 -0.88 8.10 -2.39 -0.02 -0.90 16 39 H 0.40 -3.08 9.12 -74.05 -0.68 -3.76 16 40 H 0.05 0.74 7.85 -2.39 -0.02 0.72 16 41 H 0.10 0.57 8.14 -2.39 -0.02 0.55 16 Total: 0.00 -37.30 349.15 -5.06 -42.37 By element: Atomic # 1 Polarization: -24.85 SS G_CDS: -2.50 Total: -27.35 kcal Atomic # 6 Polarization: 1.41 SS G_CDS: 3.24 Total: 4.66 kcal Atomic # 7 Polarization: 6.61 SS G_CDS: -3.40 Total: 3.21 kcal Atomic # 8 Polarization: -17.49 SS G_CDS: -4.44 Total: -21.93 kcal Atomic # 14 Polarization: -2.99 SS G_CDS: 2.04 Total: -0.95 kcal Total: -37.30 -5.06 -42.37 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_2989410.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.919 kcal (2) G-P(sol) polarization free energy of solvation -37.302 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -123.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.70 seconds