Wall clock time and date at job start Sat Mar 6 2021 22:41:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35994 * 116.99957 * 2 1 4 4 C 1.39163 * 120.07036 * 180.02562 * 3 2 1 5 5 O 1.35984 * 120.07171 * 0.02562 * 4 3 2 6 6 C 1.42903 * 117.00158 * 179.72772 * 5 4 3 7 7 C 1.50700 * 109.47336 * 180.02562 * 6 5 4 8 8 O 1.21280 * 120.00050 * 359.97438 * 7 6 5 9 9 N 1.34780 * 119.99896 * 179.97438 * 7 6 5 10 10 C 1.46498 * 120.00029 * 174.99410 * 9 7 6 11 11 C 1.50693 * 112.85048 * 298.27378 * 10 9 7 12 12 N 1.34777 * 120.00198 * 325.26301 * 11 10 9 13 13 O 1.21279 * 120.00034 * 145.54051 * 11 10 9 14 14 C 1.53786 * 113.61402 * 167.07332 * 10 9 7 15 15 C 1.53783 * 87.08134 * 270.80474 * 14 10 9 16 16 H 1.08994 * 113.61201 * 220.02135 * 15 14 10 17 17 O 1.42897 * 113.61684 * 89.19956 * 15 14 10 18 18 C 1.53778 * 113.61097 * 69.46921 * 10 9 7 19 19 C 1.38562 * 119.85067 * 179.72853 * 4 3 2 20 20 C 1.38239 * 120.00182 * 0.27309 * 19 4 3 21 21 N 1.48003 * 119.92658 * 180.02562 * 20 19 4 22 22 O 1.21799 * 120.00333 * 0.02562 * 21 20 19 23 23 O 1.21802 * 120.00019 * 180.02562 * 21 20 19 24 24 C 1.38254 * 120.14766 * 0.02562 * 20 19 4 25 25 C 1.50699 * 119.92725 * 179.97438 * 24 20 19 26 26 O 1.42898 * 109.46796 * 75.00509 * 25 24 20 27 27 Si 1.86298 * 109.46987 * 195.00256 * 25 24 20 28 28 C 1.38241 * 120.14622 * 359.97438 * 24 20 19 29 29 H 1.08995 * 109.47595 * 179.97438 * 1 2 3 30 30 H 1.09003 * 109.46897 * 299.99825 * 1 2 3 31 31 H 1.09003 * 109.47709 * 59.99464 * 1 2 3 32 32 H 1.08993 * 109.47175 * 59.99281 * 6 5 4 33 33 H 1.09006 * 109.46389 * 299.99841 * 6 5 4 34 34 H 0.96999 * 119.99783 * 354.99861 * 9 7 6 35 35 H 0.96998 * 120.00093 * 175.36093 * 12 11 10 36 36 H 0.97006 * 119.99646 * 355.35626 * 12 11 10 37 37 H 1.09005 * 113.61140 * 25.34885 * 14 10 9 38 38 H 1.08991 * 113.61426 * 156.25252 * 14 10 9 39 39 H 0.96701 * 114.00225 * 179.97438 * 17 15 14 40 40 H 1.08995 * 113.61504 * 203.74699 * 18 10 9 41 41 H 1.08999 * 113.61918 * 334.65055 * 18 10 9 42 42 H 1.08003 * 119.99821 * 180.30102 * 19 4 3 43 43 H 1.09000 * 109.47246 * 315.00681 * 25 24 20 44 44 H 0.96699 * 114.00165 * 59.99678 * 26 25 24 45 45 H 1.48504 * 109.99961 * 58.68753 * 27 25 24 46 46 H 1.48504 * 109.99661 * 180.02562 * 27 25 24 47 47 H 1.07995 * 120.00191 * 180.02562 * 28 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 -0.0005 5 8 4.1794 0.1477 -0.0016 6 6 5.6003 0.3005 -0.0081 7 6 6.2518 -1.0584 -0.0090 8 8 5.5668 -2.0593 -0.0040 9 7 7.5956 -1.1614 -0.0153 10 6 8.2299 -2.4774 0.0945 11 6 7.9044 -3.1777 1.3885 12 7 7.7525 -2.4637 2.5215 13 8 7.7841 -4.3843 1.4115 14 6 9.7308 -2.4677 -0.2402 15 6 9.3265 -2.7276 -1.7010 16 1 9.9765 -3.4361 -2.2144 17 8 9.1023 -1.5340 -2.4539 18 6 8.0359 -3.3604 -1.1495 19 6 4.0603 2.5233 -0.0062 20 6 3.3030 3.6798 -0.0057 21 7 3.9716 5.0002 -0.0123 22 8 5.1877 5.0670 -0.0188 23 8 3.3056 6.0200 -0.0113 24 6 1.9225 3.6057 0.0011 25 6 1.1018 4.8696 0.0023 26 8 1.1285 5.4561 -1.3005 27 14 -0.6571 4.4675 0.4663 28 6 1.2932 2.3748 0.0068 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8899 32 1 5.9104 0.8521 0.8793 33 1 5.9025 0.8485 -0.9006 34 1 8.1427 -0.3642 -0.0926 35 1 7.4771 -2.9055 3.3400 36 1 7.9185 -1.5080 2.5184 37 1 10.2066 -1.4994 -0.0845 38 1 10.2844 -3.2901 0.2126 39 1 8.8481 -1.6910 -3.3736 40 1 8.1253 -4.4274 -0.9458 41 1 7.1455 -3.1119 -1.7269 42 1 5.1386 2.5839 -0.0116 43 1 1.5169 5.5717 0.7254 44 1 0.7732 4.8858 -1.9959 45 1 -0.6954 3.8279 1.8060 46 1 -1.4770 5.7057 0.4705 47 1 0.2147 2.3197 0.0117 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_4549636.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:30 Heat of formation + Delta-G solvation = -151.355337 kcal Electronic energy + Delta-G solvation = -38947.095702 eV Core-core repulsion = 33488.942756 eV Total energy + Delta-G solvation = -5458.152946 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.139 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -43.39785 -42.39205 -42.01662 -40.51414 -39.54282 -39.25241 -39.04446 -37.73005 -37.13186 -36.16016 -34.82906 -34.01522 -32.67897 -32.51075 -29.95000 -28.78026 -27.91861 -27.07471 -26.80731 -25.76445 -23.96249 -23.23844 -22.58192 -21.91334 -20.81733 -20.43646 -19.86394 -19.51747 -19.17797 -18.79041 -18.67679 -18.48190 -18.00274 -17.86629 -17.73732 -17.68011 -17.31090 -16.85350 -16.67679 -16.39937 -16.09102 -15.93887 -15.73997 -15.66784 -15.38339 -15.24068 -14.90957 -14.70449 -14.39224 -13.99574 -13.89974 -13.76801 -13.58004 -13.44988 -13.22400 -13.03094 -12.67368 -12.57145 -12.50104 -12.43911 -12.34516 -12.26371 -12.22125 -11.78039 -11.73710 -11.51533 -11.19641 -10.90064 -10.78994 -10.53610 -10.46395 -10.19697 -9.49892 -5.13959 -1.36355 -0.43923 0.16347 0.30680 1.06725 1.12706 1.28602 1.42262 1.56681 1.88718 1.89491 1.93307 2.21526 2.42626 2.97464 2.97742 3.15539 3.25503 3.26175 3.37995 3.45771 3.49334 3.55819 3.67672 3.85656 3.90450 3.93739 3.94667 4.05193 4.10727 4.22277 4.32031 4.37749 4.40091 4.54788 4.59437 4.68146 4.72766 4.76259 4.80361 4.84079 4.88867 5.23519 5.25693 5.56172 5.71833 6.04585 6.23198 6.33146 6.47252 6.71501 6.79786 6.99026 7.15219 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.004 4.004 2 O -0.308 6.308 3 C 0.170 3.830 4 C 0.101 3.899 5 O -0.290 6.290 6 C 0.029 3.971 7 C 0.518 3.482 8 O -0.552 6.552 9 N -0.677 5.677 10 C 0.132 3.868 11 C 0.523 3.477 12 N -0.835 5.835 13 O -0.582 6.582 14 C -0.107 4.107 15 C 0.094 3.906 16 H 0.095 0.905 17 O -0.555 6.555 18 C -0.163 4.163 19 C -0.108 4.108 20 C -0.045 4.045 21 N 0.036 4.964 22 O -0.183 6.183 23 O -0.168 6.168 24 C -0.040 4.040 25 C -0.091 4.091 26 O -0.536 6.536 27 Si 0.785 3.215 28 C -0.163 4.163 29 H 0.119 0.881 30 H 0.080 0.920 31 H 0.094 0.906 32 H 0.133 0.867 33 H 0.130 0.870 34 H 0.429 0.571 35 H 0.406 0.594 36 H 0.414 0.586 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.399 0.601 40 H 0.094 0.906 41 H 0.066 0.934 42 H 0.185 0.815 43 H 0.115 0.885 44 H 0.393 0.607 45 H -0.272 1.272 46 H -0.291 1.291 47 H 0.193 0.807 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.219 -0.324 -2.039 2.077 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.097 4.097 2 O -0.220 6.220 3 C 0.121 3.879 4 C 0.054 3.946 5 O -0.203 6.203 6 C -0.049 4.049 7 C 0.304 3.696 8 O -0.428 6.428 9 N -0.334 5.334 10 C 0.041 3.959 11 C 0.307 3.693 12 N -0.398 5.398 13 O -0.461 6.461 14 C -0.144 4.144 15 C 0.035 3.965 16 H 0.113 0.887 17 O -0.363 6.363 18 C -0.202 4.202 19 C -0.128 4.128 20 C -0.130 4.130 21 N 0.549 4.451 22 O -0.395 6.395 23 O -0.381 6.381 24 C -0.042 4.042 25 C -0.199 4.199 26 O -0.343 6.343 27 Si 0.687 3.313 28 C -0.182 4.182 29 H 0.138 0.862 30 H 0.099 0.901 31 H 0.112 0.888 32 H 0.151 0.849 33 H 0.147 0.853 34 H 0.269 0.731 35 H 0.237 0.763 36 H 0.245 0.755 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.250 0.750 40 H 0.112 0.888 41 H 0.085 0.915 42 H 0.202 0.798 43 H 0.132 0.868 44 H 0.242 0.758 45 H -0.198 1.198 46 H -0.218 1.218 47 H 0.209 0.791 Dipole moment (debyes) X Y Z Total from point charges -1.261 -1.916 -0.733 2.408 hybrid contribution 0.726 1.072 0.176 1.307 sum -0.536 -0.843 -0.557 1.144 Atomic orbital electron populations 1.23803 0.74725 1.06993 1.04217 1.86334 1.24838 1.24596 1.86218 1.18694 0.89224 0.86340 0.93625 1.17943 0.88746 0.85095 1.02843 1.86302 1.18389 1.26834 1.88757 1.22882 0.78849 0.95514 1.07618 1.20410 0.82680 0.90704 0.75843 1.90845 1.63736 1.39665 1.48597 1.45174 1.05175 1.08450 1.74633 1.21434 0.97530 0.85005 0.91929 1.20879 0.74787 0.87084 0.86558 1.43708 1.70777 1.13560 1.11739 1.90738 1.52257 1.16250 1.86810 1.23339 0.90287 1.06481 0.94332 1.22611 0.94097 0.87248 0.92585 0.88697 1.86334 1.91393 1.30017 1.28563 1.23952 1.00631 1.00181 0.95436 1.20904 1.03046 0.88051 1.00785 1.20554 0.92730 0.81970 1.17729 1.43712 1.00826 1.03416 0.97165 1.94501 0.96488 1.94109 1.54379 1.94583 1.64428 1.25394 1.53678 1.20217 0.91123 0.97608 0.95260 1.25745 1.10475 0.92813 0.90821 1.86670 1.86980 1.44608 1.16011 0.94400 0.71929 0.82185 0.82774 1.21073 1.01743 0.88125 1.07216 0.86240 0.90150 0.88795 0.84928 0.85284 0.73118 0.76316 0.75504 0.86406 0.86177 0.75023 0.88785 0.91494 0.79790 0.86765 0.75803 1.19797 1.21808 0.79073 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.00 0.04 9.81 113.37 1.11 1.15 16 2 O -0.31 0.17 10.28 -79.62 -0.82 -0.65 16 3 C 0.17 -0.29 6.70 22.57 0.15 -0.14 16 4 C 0.10 -0.05 6.70 22.57 0.15 0.10 16 5 O -0.29 -0.59 9.45 -66.96 -0.63 -1.22 16 6 C 0.03 -0.17 5.22 71.24 0.37 0.20 16 7 C 0.52 0.09 7.46 87.66 0.65 0.75 16 8 O -0.55 -6.69 15.22 16.01 0.24 -6.44 16 9 N -0.68 3.94 4.17 -423.93 -1.77 2.17 16 10 C 0.13 -0.12 0.95 3.38 0.00 -0.12 16 11 C 0.52 2.80 6.48 87.65 0.57 3.37 16 12 N -0.83 1.64 8.78 -173.54 -1.52 0.11 16 13 O -0.58 -8.99 16.76 -3.03 -0.05 -9.04 16 14 C -0.11 0.70 7.18 31.12 0.22 0.92 16 15 C 0.09 -0.50 5.28 31.18 0.16 -0.34 16 16 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 17 O -0.55 3.65 13.10 -148.98 -1.95 1.70 16 18 C -0.16 -0.33 6.71 31.18 0.21 -0.13 16 19 C -0.11 0.20 8.54 22.35 0.19 0.39 16 20 C -0.05 -0.11 6.85 36.38 0.25 0.14 16 21 N 0.04 0.31 4.45 -46.46 -0.21 0.10 16 22 O -0.18 -1.74 18.44 18.89 0.35 -1.39 16 23 O -0.17 -2.03 14.62 25.10 0.37 -1.66 16 24 C -0.04 0.05 5.26 -19.86 -0.10 -0.05 16 25 C -0.09 0.04 1.74 71.24 0.12 0.16 16 26 O -0.54 -0.35 11.80 -129.62 -1.53 -1.88 16 27 Si 0.78 -4.39 29.91 68.60 2.05 -2.33 16 28 C -0.16 0.94 7.65 22.35 0.17 1.11 16 29 H 0.12 -1.34 8.14 -2.39 -0.02 -1.36 16 30 H 0.08 -1.05 7.65 -2.39 -0.02 -1.07 16 31 H 0.09 -1.43 7.68 -2.39 -0.02 -1.45 16 32 H 0.13 -1.69 7.66 -2.39 -0.02 -1.71 16 33 H 0.13 -1.47 7.66 -2.38 -0.02 -1.49 16 34 H 0.43 -5.50 8.64 -92.71 -0.80 -6.30 16 35 H 0.41 -0.88 8.93 -92.71 -0.83 -1.71 16 36 H 0.41 -3.62 8.43 -92.70 -0.78 -4.40 16 37 H 0.12 -1.29 8.09 -2.38 -0.02 -1.31 16 38 H 0.12 -0.80 8.09 -2.39 -0.02 -0.82 16 39 H 0.40 -4.79 9.12 -74.06 -0.68 -5.46 16 40 H 0.09 0.56 7.34 -2.39 -0.02 0.54 16 41 H 0.07 0.40 7.56 -2.39 -0.02 0.38 16 42 H 0.18 -1.23 5.85 -2.91 -0.02 -1.25 16 43 H 0.12 0.50 6.07 -2.39 -0.01 0.48 16 44 H 0.39 -3.65 8.70 -74.06 -0.64 -4.30 16 45 H -0.27 0.60 7.11 99.48 0.71 1.31 16 46 H -0.29 -0.75 7.11 99.48 0.71 -0.04 16 47 H 0.19 -2.46 3.36 -2.91 -0.01 -2.47 16 Total: 0.00 -42.39 400.84 -3.78 -46.16 By element: Atomic # 1 Polarization: -30.63 SS G_CDS: -2.54 Total: -33.17 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 4.24 Total: 7.54 kcal Atomic # 7 Polarization: 5.88 SS G_CDS: -3.50 Total: 2.38 kcal Atomic # 8 Polarization: -16.55 SS G_CDS: -4.02 Total: -20.58 kcal Atomic # 14 Polarization: -4.39 SS G_CDS: 2.05 Total: -2.33 kcal Total: -42.39 -3.78 -46.16 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_4549636.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -105.193 kcal (2) G-P(sol) polarization free energy of solvation -42.387 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -147.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.775 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds