Wall clock time and date at job start Sat Mar 6 2021 22:41:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42890 * 1 3 3 C 1.35983 * 117.00080 * 2 1 4 4 C 1.38672 * 120.00255 * 180.02562 * 3 2 1 5 5 C 1.38159 * 120.00136 * 180.02562 * 4 3 2 6 6 C 1.50701 * 120.00154 * 180.02562 * 5 4 3 7 7 O 1.42900 * 109.47106 * 254.98301 * 6 5 4 8 8 Si 1.86301 * 109.46963 * 14.98289 * 6 5 4 9 9 C 1.38678 * 119.99755 * 0.02562 * 5 4 3 10 10 O 1.35983 * 119.99675 * 180.02562 * 9 5 4 11 11 C 1.42904 * 116.99932 * 180.02562 * 10 9 5 12 12 C 1.50695 * 109.46996 * 179.97438 * 11 10 9 13 13 O 1.21279 * 120.00457 * 359.97438 * 12 11 10 14 14 N 1.34779 * 119.99658 * 180.02562 * 12 11 10 15 15 C 1.46504 * 119.99950 * 174.89843 * 14 12 11 16 16 C 1.50699 * 112.85218 * 57.29505 * 15 14 12 17 17 N 1.34769 * 120.00066 * 47.91828 * 16 15 14 18 18 O 1.21286 * 119.99720 * 227.64536 * 16 15 14 19 19 C 1.53785 * 113.68376 * 286.02432 * 15 14 12 20 20 C 1.53782 * 87.07671 * 220.00900 * 19 15 14 21 21 H 1.09008 * 113.61457 * 270.88506 * 20 19 15 22 22 O 1.42901 * 113.61171 * 139.98487 * 20 19 15 23 23 C 1.53775 * 87.08323 * 25.43678 * 20 19 15 24 24 C 1.38716 * 120.00182 * 0.26884 * 9 5 4 25 25 C 1.38116 * 119.99556 * 359.44886 * 24 9 5 26 26 H 1.09008 * 109.47175 * 180.02562 * 1 2 3 27 27 H 1.09002 * 109.47474 * 299.99915 * 1 2 3 28 28 H 1.09001 * 109.47809 * 60.00380 * 1 2 3 29 29 H 1.07998 * 120.00281 * 0.04296 * 4 3 2 30 30 H 1.08999 * 109.46818 * 134.98237 * 6 5 4 31 31 H 0.96691 * 114.00282 * 300.00067 * 7 6 5 32 32 H 1.48500 * 110.00272 * 298.68006 * 8 6 5 33 33 H 1.48501 * 110.00107 * 60.00132 * 8 6 5 34 34 H 1.09000 * 109.47008 * 59.99338 * 11 10 9 35 35 H 1.09007 * 109.46658 * 299.99487 * 11 10 9 36 36 H 0.97001 * 120.00323 * 354.88174 * 14 12 11 37 37 H 0.96998 * 120.00141 * 184.70911 * 17 16 15 38 38 H 0.96996 * 120.00383 * 4.70371 * 17 16 15 39 39 H 1.08990 * 113.61614 * 334.55609 * 19 15 14 40 40 H 1.08998 * 113.61007 * 105.46198 * 19 15 14 41 41 H 0.96708 * 114.00032 * 82.50179 * 22 20 19 42 42 H 1.09001 * 113.61511 * 220.02016 * 23 20 19 43 43 H 1.08998 * 113.69497 * 89.12784 * 23 20 19 44 44 H 1.07995 * 120.00182 * 179.70928 * 24 9 5 45 45 H 1.08006 * 119.99262 * 180.25576 * 25 24 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0463 1.2116 0.0000 4 6 3.4311 1.2842 -0.0005 5 6 4.0583 2.5152 0.0000 6 6 5.5632 2.5942 -0.0012 7 8 6.0217 2.9666 1.3000 8 14 6.2718 0.9326 -0.4573 9 6 3.3029 3.6782 0.0016 10 8 3.9203 4.8899 0.0016 11 6 3.0803 6.0460 0.0039 12 6 3.9345 7.2875 0.0042 13 8 5.1435 7.1918 0.0030 14 7 3.3548 8.5042 0.0067 15 6 4.1809 9.7089 0.1198 16 6 5.2197 9.8104 -0.9672 17 7 4.8704 9.6123 -2.2537 18 8 6.3690 10.0752 -0.6847 19 6 4.7423 9.9426 1.5323 20 6 4.4478 11.4365 1.3168 21 1 5.2723 11.9823 0.8578 22 8 3.9249 12.0897 2.4752 23 6 3.3660 10.9983 0.3156 24 6 1.9177 3.6056 0.0083 25 6 1.2908 2.3750 0.0019 26 1 -0.3634 -1.0277 0.0005 27 1 -0.3634 0.5138 0.8900 28 1 -0.3635 0.5138 -0.8900 29 1 4.0194 0.3785 -0.0017 30 1 5.8874 3.3393 -0.7277 31 1 5.6913 3.8233 1.6032 32 1 5.8633 -0.0858 0.5433 33 1 5.8025 0.5339 -1.8086 34 1 2.4524 6.0371 0.8948 35 1 2.4497 6.0386 -0.8852 36 1 2.3908 8.5824 -0.0666 37 1 5.5499 9.6099 -2.9459 38 1 3.9395 9.4721 -2.4875 39 1 4.1425 9.4888 2.3211 40 1 5.8045 9.7155 1.6230 41 1 4.6006 12.3678 3.1087 42 1 3.3172 11.6235 -0.5759 43 1 2.3894 10.8329 0.7705 44 1 1.3295 4.5113 0.0143 45 1 0.2122 2.3185 0.0029 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_4974302.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:46 Heat of formation + Delta-G solvation = -166.654803 kcal Electronic energy + Delta-G solvation = -31982.514507 eV Core-core repulsion = 27354.714562 eV Total energy + Delta-G solvation = -4627.799945 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.38487 -41.83438 -40.55624 -39.73243 -39.02777 -38.16621 -37.02274 -36.45474 -34.80865 -34.15025 -32.92813 -31.16513 -29.59771 -28.09871 -27.06168 -26.65784 -26.32520 -24.02619 -23.10818 -22.50709 -21.61967 -20.49185 -19.66868 -19.30311 -18.89831 -18.47646 -18.32169 -18.12489 -17.83003 -17.55987 -17.43495 -16.83510 -16.74781 -16.15402 -15.96820 -15.79153 -15.67544 -15.61119 -15.35808 -15.33547 -14.88951 -14.73976 -14.18391 -13.99782 -13.81486 -13.63172 -13.57784 -13.49791 -13.36566 -13.12670 -12.63817 -12.52320 -12.37264 -12.23785 -11.89560 -11.55137 -11.47292 -11.32932 -11.17280 -11.13843 -10.88079 -10.79019 -10.33611 -10.25036 -8.94851 -4.88643 -0.08089 0.20212 1.11373 1.29853 1.31650 1.51936 1.56713 1.87378 2.21260 2.30981 2.40530 2.43024 3.12274 3.18801 3.30786 3.39713 3.45697 3.58969 3.68848 3.80232 3.81808 3.90912 3.97574 4.02317 4.05352 4.10937 4.11289 4.25199 4.32854 4.33243 4.54635 4.56042 4.63691 4.67369 4.74650 4.83538 4.85804 4.88346 4.99370 5.06759 5.17424 5.28508 5.72544 6.02965 6.24181 6.30424 6.36963 6.50903 6.74794 7.01942 7.16691 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.342 6.342 3 C 0.088 3.912 4 C -0.143 4.143 5 C -0.119 4.119 6 C -0.085 4.085 7 O -0.545 6.545 8 Si 0.808 3.192 9 C 0.098 3.902 10 O -0.311 6.311 11 C 0.037 3.963 12 C 0.512 3.488 13 O -0.551 6.551 14 N -0.689 5.689 15 C 0.134 3.866 16 C 0.534 3.466 17 N -0.831 5.831 18 O -0.576 6.576 19 C -0.158 4.158 20 C 0.080 3.920 21 H 0.080 0.920 22 O -0.565 6.565 23 C -0.100 4.100 24 C -0.152 4.152 25 C -0.159 4.159 26 H 0.113 0.887 27 H 0.070 0.930 28 H 0.071 0.929 29 H 0.122 0.878 30 H 0.077 0.923 31 H 0.371 0.629 32 H -0.286 1.286 33 H -0.265 1.265 34 H 0.129 0.871 35 H 0.132 0.868 36 H 0.431 0.569 37 H 0.408 0.592 38 H 0.417 0.583 39 H 0.108 0.892 40 H 0.057 0.943 41 H 0.398 0.602 42 H 0.104 0.896 43 H 0.136 0.864 44 H 0.178 0.822 45 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.514 3.726 -2.850 12.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 O -0.257 6.257 3 C 0.043 3.957 4 C -0.161 4.161 5 C -0.120 4.120 6 C -0.192 4.192 7 O -0.351 6.351 8 Si 0.710 3.290 9 C 0.053 3.947 10 O -0.225 6.225 11 C -0.040 4.040 12 C 0.298 3.702 13 O -0.426 6.426 14 N -0.348 5.348 15 C 0.043 3.957 16 C 0.316 3.684 17 N -0.395 5.395 18 O -0.454 6.454 19 C -0.198 4.198 20 C 0.020 3.980 21 H 0.098 0.902 22 O -0.373 6.373 23 C -0.137 4.137 24 C -0.170 4.170 25 C -0.177 4.177 26 H 0.132 0.868 27 H 0.088 0.912 28 H 0.090 0.910 29 H 0.140 0.860 30 H 0.095 0.905 31 H 0.220 0.780 32 H -0.214 1.214 33 H -0.191 1.191 34 H 0.147 0.853 35 H 0.150 0.850 36 H 0.272 0.728 37 H 0.239 0.761 38 H 0.248 0.752 39 H 0.127 0.873 40 H 0.075 0.925 41 H 0.248 0.752 42 H 0.123 0.877 43 H 0.154 0.846 44 H 0.196 0.804 45 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -10.134 2.193 -3.051 10.808 hybrid contribution -1.253 0.935 0.114 1.568 sum -11.387 3.128 -2.937 12.169 Atomic orbital electron populations 1.23388 0.75952 1.05697 1.02675 1.86080 1.23885 1.26712 1.89004 1.18995 0.91667 0.85695 0.99346 1.20149 0.92925 0.96854 1.06221 1.19536 0.96698 0.90694 1.05074 1.25359 0.91323 1.14055 0.88491 1.86658 1.73930 1.42257 1.32264 0.92480 0.90147 0.69932 0.76484 1.18661 0.91577 0.84157 1.00284 1.86097 1.35392 1.11679 1.89296 1.22758 0.92458 0.81400 1.07410 1.20672 0.88545 0.85339 0.75630 1.90866 1.16564 1.86946 1.48271 1.45466 1.11431 1.02412 1.75486 1.21336 0.92594 0.87487 0.94258 1.20289 0.88330 0.74979 0.84759 1.43590 1.14221 1.74189 1.07467 1.90755 1.21921 1.49399 1.83358 1.23960 1.02111 0.98311 0.95374 1.23065 0.96615 0.90543 0.87768 0.90170 1.86428 1.38909 1.78978 1.33017 1.23358 0.99393 0.91172 0.99811 1.21480 0.92008 1.00082 1.03467 1.21451 1.01713 0.90683 1.03846 0.86848 0.91183 0.91042 0.86018 0.90486 0.78028 1.21365 1.19099 0.85348 0.85030 0.72776 0.76082 0.75239 0.87325 0.92462 0.75201 0.87745 0.84622 0.80443 0.81597 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.07 9.81 113.37 1.11 1.04 16 2 O -0.34 -1.95 10.50 -93.36 -0.98 -2.93 16 3 C 0.09 0.51 6.68 22.49 0.15 0.66 16 4 C -0.14 -1.33 8.59 22.35 0.19 -1.14 16 5 C -0.12 -0.94 5.28 -19.78 -0.10 -1.04 16 6 C -0.08 -0.69 2.33 71.24 0.17 -0.52 16 7 O -0.54 -5.56 12.65 -148.98 -1.89 -7.44 16 8 Si 0.81 4.73 30.40 68.60 2.09 6.82 16 9 C 0.10 0.28 6.62 22.49 0.15 0.43 16 10 O -0.31 -0.73 8.56 -74.32 -0.64 -1.36 16 11 C 0.04 -0.28 5.22 71.23 0.37 0.09 16 12 C 0.51 -0.77 7.63 87.66 0.67 -0.10 16 13 O -0.55 -6.21 15.44 16.01 0.25 -5.96 16 14 N -0.69 5.97 5.23 -423.91 -2.22 3.76 16 15 C 0.13 -0.33 1.02 3.38 0.00 -0.33 16 16 C 0.53 2.30 5.65 87.66 0.49 2.79 16 17 N -0.83 2.90 8.83 -173.54 -1.53 1.37 16 18 O -0.58 -8.76 16.54 -3.05 -0.05 -8.81 16 19 C -0.16 -0.27 6.94 31.12 0.22 -0.06 16 20 C 0.08 -0.08 4.86 31.12 0.15 0.07 16 21 H 0.08 0.12 8.02 -2.38 -0.02 0.10 16 22 O -0.57 0.69 13.67 -148.98 -2.04 -1.35 16 23 C -0.10 0.73 7.19 31.12 0.22 0.96 16 24 C -0.15 0.51 9.03 22.35 0.20 0.71 16 25 C -0.16 0.21 9.03 22.36 0.20 0.41 16 26 H 0.11 -0.75 8.14 -2.38 -0.02 -0.77 16 27 H 0.07 -0.48 7.66 -2.39 -0.02 -0.50 16 28 H 0.07 -0.52 7.66 -2.39 -0.02 -0.54 16 29 H 0.12 1.36 4.93 -2.91 -0.01 1.34 16 30 H 0.08 0.60 7.82 -2.39 -0.02 0.58 16 31 H 0.37 2.81 8.60 -74.06 -0.64 2.17 16 32 H -0.29 -3.26 6.81 99.48 0.68 -2.59 16 33 H -0.27 -2.15 7.11 99.48 0.71 -1.44 16 34 H 0.13 -1.77 7.65 -2.39 -0.02 -1.79 16 35 H 0.13 -1.97 7.67 -2.38 -0.02 -1.99 16 36 H 0.43 -7.80 8.67 -92.71 -0.80 -8.61 16 37 H 0.41 -1.34 8.93 -92.71 -0.83 -2.17 16 38 H 0.42 -4.59 8.81 -92.71 -0.82 -5.41 16 39 H 0.11 -0.03 8.14 -2.39 -0.02 -0.05 16 40 H 0.06 0.54 7.45 -2.39 -0.02 0.52 16 41 H 0.40 -2.93 9.12 -74.05 -0.68 -3.60 16 42 H 0.10 -1.02 8.09 -2.39 -0.02 -1.04 16 43 H 0.14 -1.59 8.14 -2.39 -0.02 -1.61 16 44 H 0.18 -2.26 6.29 -2.91 -0.02 -2.27 16 45 H 0.17 -1.30 6.29 -2.91 -0.02 -1.32 16 Total: 0.00 -37.48 379.70 -5.44 -42.92 By element: Atomic # 1 Polarization: -28.34 SS G_CDS: -2.63 Total: -30.98 kcal Atomic # 6 Polarization: -0.23 SS G_CDS: 4.20 Total: 3.97 kcal Atomic # 7 Polarization: 8.87 SS G_CDS: -3.75 Total: 5.13 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -5.34 Total: -27.85 kcal Atomic # 14 Polarization: 4.73 SS G_CDS: 2.09 Total: 6.82 kcal Total: -37.48 -5.44 -42.92 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_4974302.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -123.736 kcal (2) G-P(sol) polarization free energy of solvation -37.481 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -161.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -166.655 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds