Wall clock time and date at job start Sat Mar 6 2021 22:41:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42893 * 1 3 3 C 1.35893 * 117.00347 * 2 1 4 4 C 1.38612 * 120.02859 * 180.02562 * 3 2 1 5 5 C 1.38660 * 119.89160 * 179.70388 * 4 3 2 6 6 O 1.35887 * 120.03203 * 180.27570 * 5 4 3 7 7 C 1.42906 * 116.99831 * 0.24806 * 6 5 4 8 8 C 1.50703 * 109.46909 * 179.97438 * 7 6 5 9 9 O 1.21276 * 120.00382 * 0.02562 * 8 7 6 10 10 N 1.34777 * 119.99488 * 180.02562 * 8 7 6 11 11 C 1.46509 * 119.99816 * 174.99893 * 10 8 7 12 12 C 1.50699 * 112.84501 * 293.72983 * 11 10 8 13 13 N 1.34784 * 120.00376 * 323.89490 * 12 11 10 14 14 O 1.21283 * 120.00221 * 143.90133 * 12 11 10 15 15 C 1.53771 * 113.61456 * 162.42417 * 11 10 8 16 16 C 1.53783 * 87.08173 * 220.01470 * 15 11 10 17 17 H 1.08997 * 113.61710 * 270.88547 * 16 15 11 18 18 O 1.42897 * 113.69201 * 139.98811 * 16 15 11 19 19 C 1.53781 * 113.61513 * 64.92143 * 11 10 8 20 20 C 1.38760 * 119.94009 * 0.52883 * 5 4 3 21 21 C 1.50702 * 119.96969 * 179.75039 * 20 5 4 22 22 O 1.42900 * 109.46817 * 284.72561 * 21 20 5 23 23 Si 1.86297 * 109.47010 * 164.72673 * 21 20 5 24 24 C 1.38199 * 120.05360 * 359.47089 * 20 5 4 25 25 C 1.38152 * 120.11054 * 0.27649 * 24 20 5 26 26 H 1.08997 * 109.47476 * 300.00421 * 1 2 3 27 27 H 1.09003 * 109.46873 * 60.00294 * 1 2 3 28 28 H 1.08998 * 109.47666 * 179.97438 * 1 2 3 29 29 H 1.08000 * 120.05475 * 0.02562 * 4 3 2 30 30 H 1.08995 * 109.47287 * 300.00590 * 7 6 5 31 31 H 1.08998 * 109.46498 * 60.01010 * 7 6 5 32 32 H 0.96994 * 120.00757 * 354.99222 * 10 8 7 33 33 H 0.97007 * 119.99215 * 354.98888 * 13 12 11 34 34 H 0.96994 * 120.00556 * 174.98557 * 13 12 11 35 35 H 1.08998 * 113.61467 * 334.56284 * 15 11 10 36 36 H 1.08999 * 113.61723 * 105.46905 * 15 11 10 37 37 H 0.96704 * 114.00191 * 82.46769 * 18 16 15 38 38 H 1.09004 * 113.61401 * 254.53189 * 19 11 10 39 39 H 1.08997 * 113.61592 * 25.43562 * 19 11 10 40 40 H 1.08995 * 109.47176 * 44.72157 * 21 20 5 41 41 H 0.96699 * 114.00466 * 180.02562 * 22 21 20 42 42 H 1.48501 * 109.99960 * 298.67802 * 23 21 20 43 43 H 1.48502 * 110.00227 * 59.99539 * 23 21 20 44 44 H 1.07999 * 119.93922 * 180.29815 * 24 20 5 45 45 H 1.08003 * 119.96737 * 179.97438 * 25 24 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0459 1.2108 0.0000 4 6 3.4301 1.2839 -0.0005 5 6 4.0568 2.5208 -0.0067 6 8 5.4135 2.5959 -0.0130 7 6 6.1316 1.3603 -0.0182 8 6 7.6124 1.6399 -0.0253 9 8 8.0135 2.7845 -0.0253 10 7 8.4911 0.6180 -0.0316 11 6 9.9265 0.8868 -0.1491 12 6 10.3046 1.4727 -1.4851 13 7 9.6689 1.0681 -2.6026 14 8 11.1810 2.3081 -1.5548 15 6 10.8117 -0.2950 0.2802 16 6 11.7396 0.7405 0.9372 17 1 12.5099 1.1234 0.2679 18 8 12.2596 0.3250 2.2017 19 6 10.5091 1.6563 1.0481 20 6 3.2971 3.6820 -0.0013 21 6 3.9775 5.0267 -0.0024 22 8 4.5043 5.2950 1.2986 23 14 2.7438 6.3465 -0.4571 24 6 1.9172 3.6064 -0.0008 25 6 1.2906 2.3752 0.0001 26 1 -0.3634 0.5139 0.8899 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 4.0196 0.3790 -0.0014 30 1 5.8740 0.7866 0.8720 31 1 5.8658 0.7895 -0.9079 32 1 8.1732 -0.2955 0.0417 33 1 9.0197 0.3487 -2.5578 34 1 9.8605 1.4963 -3.4516 35 1 10.3305 -0.9646 0.9931 36 1 11.2699 -0.8236 -0.5557 37 1 13.0336 -0.2513 2.1385 38 1 10.7231 2.7031 0.8320 39 1 9.9453 1.5202 1.9709 40 1 4.7896 5.0224 -0.7293 41 1 4.9568 6.1464 1.3719 42 1 2.2122 6.0966 -1.8210 43 1 1.6314 6.3626 0.5265 44 1 1.3278 4.5114 -0.0014 45 1 0.2121 2.3187 0.0010 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_4974312.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:49 Heat of formation + Delta-G solvation = -162.437981 kcal Electronic energy + Delta-G solvation = -32016.585025 eV Core-core repulsion = 27388.967935 eV Total energy + Delta-G solvation = -4627.617090 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.41784 -41.82697 -40.56025 -39.74307 -39.02579 -38.23219 -37.05985 -36.47264 -34.92170 -34.09589 -32.49598 -31.56360 -29.65996 -28.46492 -27.12354 -26.36196 -26.12614 -23.99394 -23.02515 -22.47205 -21.71111 -20.51999 -20.01507 -19.26446 -18.66509 -18.42018 -18.34970 -17.86810 -17.70533 -17.49934 -17.36476 -16.88979 -16.77338 -16.71960 -16.04201 -16.02259 -15.67687 -15.63465 -15.32709 -15.23043 -14.85085 -14.63402 -14.13094 -13.89235 -13.83657 -13.68243 -13.57726 -13.42249 -13.33359 -13.25502 -12.66526 -12.56943 -12.48493 -12.01208 -11.95355 -11.83204 -11.74315 -11.58133 -11.08646 -10.97526 -10.82378 -10.36991 -10.24175 -9.83626 -9.23684 -4.95842 0.02843 0.16056 1.09990 1.28676 1.30217 1.41550 1.61309 1.89468 2.11481 2.27895 2.39003 2.41859 3.07739 3.20352 3.32829 3.45067 3.49863 3.55858 3.58765 3.80477 3.84589 3.86972 3.98312 4.00423 4.08834 4.12831 4.18151 4.27898 4.32145 4.33285 4.50721 4.53303 4.59998 4.69914 4.75157 4.83247 4.86595 4.88362 5.07393 5.12956 5.16944 5.29219 5.69420 6.00354 6.20165 6.24582 6.33158 6.83022 6.87695 6.99389 7.12076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 O -0.323 6.323 3 C 0.167 3.833 4 C -0.244 4.244 5 C 0.182 3.818 6 O -0.298 6.298 7 C 0.033 3.967 8 C 0.515 3.485 9 O -0.548 6.548 10 N -0.691 5.691 11 C 0.134 3.866 12 C 0.531 3.469 13 N -0.829 5.829 14 O -0.575 6.575 15 C -0.129 4.129 16 C 0.080 3.920 17 H 0.084 0.916 18 O -0.570 6.570 19 C -0.118 4.118 20 C -0.168 4.168 21 C -0.073 4.073 22 O -0.564 6.564 23 Si 0.774 3.226 24 C -0.058 4.058 25 C -0.241 4.241 26 H 0.064 0.936 27 H 0.066 0.934 28 H 0.122 0.878 29 H 0.167 0.833 30 H 0.124 0.876 31 H 0.133 0.867 32 H 0.431 0.569 33 H 0.417 0.583 34 H 0.410 0.590 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.097 0.903 40 H 0.065 0.935 41 H 0.396 0.604 42 H -0.283 1.283 43 H -0.279 1.279 44 H 0.133 0.867 45 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.614 -8.646 -2.782 9.775 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.236 6.236 3 C 0.120 3.880 4 C -0.263 4.263 5 C 0.136 3.864 6 O -0.210 6.210 7 C -0.045 4.045 8 C 0.301 3.699 9 O -0.424 6.424 10 N -0.350 5.350 11 C 0.043 3.957 12 C 0.314 3.686 13 N -0.393 5.393 14 O -0.453 6.453 15 C -0.167 4.167 16 C 0.020 3.980 17 H 0.102 0.898 18 O -0.378 6.378 19 C -0.157 4.157 20 C -0.169 4.169 21 C -0.182 4.182 22 O -0.373 6.373 23 Si 0.678 3.322 24 C -0.075 4.075 25 C -0.260 4.260 26 H 0.083 0.917 27 H 0.085 0.915 28 H 0.141 0.859 29 H 0.184 0.816 30 H 0.142 0.858 31 H 0.151 0.849 32 H 0.272 0.728 33 H 0.248 0.752 34 H 0.241 0.759 35 H 0.153 0.847 36 H 0.124 0.876 37 H 0.250 0.750 38 H 0.075 0.925 39 H 0.116 0.884 40 H 0.083 0.917 41 H 0.246 0.754 42 H -0.210 1.210 43 H -0.206 1.206 44 H 0.150 0.850 45 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -4.114 -7.401 -2.562 8.847 hybrid contribution -0.009 -1.055 -0.519 1.176 sum -4.123 -8.457 -3.081 9.900 Atomic orbital electron populations 1.23414 0.76047 1.05947 1.02445 1.86054 1.23671 1.25998 1.87842 1.18813 0.91852 0.84704 0.92612 1.20631 0.93156 0.97597 1.14964 1.18449 0.82025 0.92804 0.93170 1.86200 1.14916 1.31914 1.87998 1.22811 0.87951 0.86447 1.07300 1.20558 0.88442 0.85234 0.75674 1.90835 1.80426 1.23086 1.48038 1.45464 1.03565 1.10527 1.75462 1.21345 0.81743 1.00640 0.91945 1.20332 0.80877 0.80764 0.86657 1.43594 1.45000 1.40682 1.09998 1.90768 1.33242 1.34059 1.87199 1.23927 0.95312 0.95009 1.02418 1.23108 0.94127 0.94956 0.85772 0.89769 1.86495 1.51422 1.71188 1.28708 1.23227 0.96244 0.99170 0.97094 1.18924 0.92856 0.93418 1.11666 1.24763 1.04804 0.99968 0.88631 1.86445 1.77456 1.44120 1.29254 0.94109 0.76693 0.85146 0.76244 1.20741 0.92647 0.98228 0.95910 1.21335 1.01588 0.91320 1.11724 0.91691 0.91505 0.85944 0.81554 0.85832 0.84920 0.72807 0.75189 0.75866 0.84720 0.87572 0.74956 0.92540 0.88450 0.91687 0.75434 1.21022 1.20639 0.85002 0.82845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 -0.08 9.81 113.37 1.11 1.03 16 2 O -0.32 -0.49 10.49 -92.35 -0.97 -1.46 16 3 C 0.17 0.63 6.68 22.49 0.15 0.78 16 4 C -0.24 -0.69 8.97 22.46 0.20 -0.49 16 5 C 0.18 1.30 6.66 22.50 0.15 1.45 16 6 O -0.30 -2.21 8.99 -73.25 -0.66 -2.87 16 7 C 0.03 -0.10 5.22 71.24 0.37 0.27 16 8 C 0.51 0.88 7.56 87.66 0.66 1.55 16 9 O -0.55 -7.69 15.54 16.02 0.25 -7.44 16 10 N -0.69 4.28 4.79 -423.92 -2.03 2.25 16 11 C 0.13 -0.07 1.05 3.38 0.00 -0.07 16 12 C 0.53 2.43 6.60 87.66 0.58 3.01 16 13 N -0.83 3.04 8.78 -173.52 -1.52 1.52 16 14 O -0.57 -8.50 16.21 -3.04 -0.05 -8.55 16 15 C -0.13 0.85 7.21 31.12 0.22 1.07 16 16 C 0.08 0.11 4.82 31.12 0.15 0.26 16 17 H 0.08 0.30 7.63 -2.39 -0.02 0.28 16 18 O -0.57 -0.68 13.67 -148.98 -2.04 -2.72 16 19 C -0.12 -0.75 6.16 31.12 0.19 -0.56 16 20 C -0.17 -1.51 5.31 -19.75 -0.10 -1.61 16 21 C -0.07 -0.50 2.37 71.24 0.17 -0.33 16 22 O -0.56 -4.60 12.86 -148.98 -1.92 -6.52 16 23 Si 0.77 1.30 30.19 68.60 2.07 3.37 16 24 C -0.06 -0.40 8.65 22.24 0.19 -0.20 16 25 C -0.24 -0.92 9.03 22.38 0.20 -0.72 16 26 H 0.06 -0.39 7.66 -2.39 -0.02 -0.41 16 27 H 0.07 -0.43 7.66 -2.39 -0.02 -0.45 16 28 H 0.12 -1.08 8.14 -2.39 -0.02 -1.10 16 29 H 0.17 -0.66 6.30 -2.91 -0.02 -0.68 16 30 H 0.12 -1.01 7.65 -2.39 -0.02 -1.03 16 31 H 0.13 -1.40 7.67 -2.39 -0.02 -1.41 16 32 H 0.43 -6.74 8.71 -92.71 -0.81 -7.55 16 33 H 0.42 -4.55 8.47 -92.70 -0.79 -5.34 16 34 H 0.41 -1.65 8.93 -92.71 -0.83 -2.47 16 35 H 0.13 -1.45 8.14 -2.39 -0.02 -1.47 16 36 H 0.11 -1.06 8.10 -2.39 -0.02 -1.08 16 37 H 0.40 -3.18 9.12 -74.05 -0.68 -3.85 16 38 H 0.06 0.80 7.63 -2.39 -0.02 0.78 16 39 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 0.48 7.82 -2.39 -0.02 0.46 16 41 H 0.40 -0.51 8.74 -74.06 -0.65 -1.16 16 42 H -0.28 -1.73 7.11 99.48 0.71 -1.02 16 43 H -0.28 -1.72 6.75 99.48 0.67 -1.05 16 44 H 0.13 0.71 4.89 -2.91 -0.01 0.70 16 45 H 0.15 -0.18 6.29 -2.91 -0.02 -0.20 16 Total: 0.00 -39.18 379.17 -5.23 -44.41 By element: Atomic # 1 Polarization: -24.80 SS G_CDS: -2.62 Total: -27.42 kcal Atomic # 6 Polarization: 1.19 SS G_CDS: 4.26 Total: 5.44 kcal Atomic # 7 Polarization: 7.32 SS G_CDS: -3.55 Total: 3.76 kcal Atomic # 8 Polarization: -24.19 SS G_CDS: -5.38 Total: -29.57 kcal Atomic # 14 Polarization: 1.30 SS G_CDS: 2.07 Total: 3.37 kcal Total: -39.18 -5.23 -44.41 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_4974312.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -118.023 kcal (2) G-P(sol) polarization free energy of solvation -39.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -157.208 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.230 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.415 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.438 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds