Wall clock time and date at job start Sat Mar 6 2021 22:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35987 * 117.00035 * 2 1 4 4 C 1.39152 * 120.07409 * 179.97438 * 3 2 1 5 5 O 1.35993 * 120.07106 * 359.97438 * 4 3 2 6 6 C 1.42900 * 116.99602 * 179.97438 * 5 4 3 7 7 C 1.50703 * 109.46835 * 179.97438 * 6 5 4 8 8 O 1.21283 * 120.00085 * 359.97438 * 7 6 5 9 9 N 1.34780 * 120.00209 * 179.97438 * 7 6 5 10 10 C 1.46495 * 120.00351 * 174.98212 * 9 7 6 11 11 C 1.50704 * 112.85242 * 298.04086 * 10 9 7 12 12 N 1.34780 * 119.99529 * 313.52377 * 11 10 9 13 13 O 1.21280 * 119.99912 * 133.79705 * 11 10 9 14 14 C 1.53781 * 113.61324 * 166.83984 * 10 9 7 15 15 C 1.53776 * 87.08306 * 270.80048 * 14 10 9 16 16 H 1.09000 * 113.62156 * 220.02134 * 15 14 10 17 17 O 1.42901 * 113.61418 * 89.11780 * 15 14 10 18 18 C 1.53784 * 113.68968 * 69.30441 * 10 9 7 19 19 C 1.38562 * 119.85324 * 180.25003 * 4 3 2 20 20 C 1.38246 * 120.00043 * 359.47674 * 19 4 3 21 21 C 1.38247 * 120.14396 * 0.50643 * 20 19 4 22 22 C 1.50702 * 119.92662 * 179.74331 * 21 20 19 23 23 O 1.42897 * 109.47564 * 245.02053 * 22 21 20 24 24 Si 1.86295 * 109.47213 * 5.02439 * 22 21 20 25 25 C 1.38238 * 120.15007 * 359.76425 * 21 20 19 26 26 H 1.09005 * 109.46959 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47067 * 299.99816 * 1 2 3 28 28 H 1.09001 * 109.47178 * 60.00346 * 1 2 3 29 29 H 1.09003 * 109.47465 * 60.00136 * 6 5 4 30 30 H 1.08999 * 109.47350 * 299.99396 * 6 5 4 31 31 H 0.97003 * 119.99734 * 354.98635 * 9 7 6 32 32 H 0.97000 * 119.99719 * 175.43323 * 12 11 10 33 33 H 0.97002 * 119.99962 * 355.42365 * 12 11 10 34 34 H 1.08994 * 113.61474 * 25.35783 * 14 10 9 35 35 H 1.09009 * 113.61094 * 156.17366 * 14 10 9 36 36 H 0.96701 * 114.00169 * 180.02562 * 17 15 14 37 37 H 1.08996 * 113.61779 * 203.67728 * 18 10 9 38 38 H 1.09004 * 113.61576 * 334.58313 * 18 10 9 39 39 H 1.08000 * 119.99938 * 179.72280 * 19 4 3 40 40 H 1.07997 * 119.92588 * 180.24877 * 20 19 4 41 41 H 1.09008 * 109.47034 * 125.02056 * 22 21 20 42 42 H 0.96702 * 113.99712 * 60.00036 * 23 22 21 43 43 H 1.48492 * 110.00532 * 179.97438 * 24 22 21 44 44 H 1.48507 * 109.99632 * 301.31822 * 24 22 21 45 45 H 1.08004 * 120.00691 * 179.97438 * 25 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0464 1.2117 0.0000 4 6 3.4360 1.2863 0.0005 5 8 4.1795 0.1476 0.0016 6 6 5.6003 0.3007 0.0015 7 6 6.2519 -1.0582 0.0034 8 8 5.5670 -2.0592 0.0051 9 7 7.5957 -1.1613 0.0032 10 6 8.2295 -2.4772 0.1159 11 6 7.9028 -3.1751 1.4110 12 7 7.9820 -2.5037 2.5770 13 8 7.5733 -4.3423 1.4045 14 6 9.7307 -2.4684 -0.2175 15 6 9.3277 -2.7310 -1.6781 16 1 9.9779 -3.4406 -2.1897 17 8 9.1027 -1.5387 -2.4329 18 6 8.0390 -3.3633 -1.1264 19 6 4.0603 2.5233 0.0058 20 6 3.3029 3.6798 -0.0005 21 6 1.9224 3.6057 -0.0014 22 6 1.1016 4.8696 -0.0024 23 8 0.3642 4.9597 1.2183 24 14 2.2309 6.3433 -0.1559 25 6 1.2932 2.3748 -0.0010 26 1 -0.3633 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 5.9065 0.8513 0.8910 30 1 5.9066 0.8496 -0.8890 31 1 8.1432 -0.3640 -0.0717 32 1 7.7085 -2.9323 3.4030 33 1 8.3128 -1.5919 2.5900 34 1 10.2067 -1.5001 -0.0630 35 1 10.2840 -3.2896 0.2385 36 1 8.8485 -1.6973 -3.3524 37 1 8.1295 -4.4297 -0.9202 38 1 7.1492 -3.1173 -1.7060 39 1 5.1386 2.5839 0.0107 40 1 3.7908 4.6433 -0.0004 41 1 0.4097 4.8528 -0.8445 42 1 0.9172 4.9792 2.0113 43 1 1.4337 7.5960 -0.1587 44 1 3.2000 6.3599 0.9693 45 1 0.2146 2.3196 -0.0013 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_60476.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:41:55 Heat of formation + Delta-G solvation = -161.597442 kcal Electronic energy + Delta-G solvation = -31936.570555 eV Core-core repulsion = 27308.989914 eV Total energy + Delta-G solvation = -4627.580641 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 353.144 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -42.31536 -41.72769 -40.32331 -39.37856 -39.08312 -38.85664 -37.03021 -36.12109 -34.75643 -34.02920 -32.03858 -31.46427 -29.65439 -28.48202 -27.03444 -26.76825 -26.13242 -23.71184 -22.72190 -22.39910 -21.76148 -20.47548 -19.80851 -19.11788 -18.69026 -18.42236 -18.07758 -17.95915 -17.81237 -17.50785 -17.12371 -16.77597 -16.65409 -16.14287 -16.01114 -15.80784 -15.75639 -15.67364 -15.47919 -15.23874 -14.92822 -14.64200 -14.32608 -13.80229 -13.78609 -13.61132 -13.49215 -13.43782 -13.20371 -12.67043 -12.60321 -12.53135 -12.18979 -12.13815 -12.00640 -11.69942 -11.62036 -11.46729 -11.11622 -10.85663 -10.76883 -10.60878 -10.15651 -9.79340 -8.93183 -4.87546 0.16241 0.27423 1.17571 1.33799 1.37458 1.56849 1.63761 2.00297 2.29709 2.44946 2.48304 2.54949 3.00349 3.24612 3.40402 3.41629 3.52287 3.65725 3.71250 3.84610 3.87853 3.97083 4.03339 4.10333 4.13043 4.27545 4.28246 4.34515 4.35895 4.56677 4.60407 4.63608 4.64711 4.71145 4.79678 4.87023 4.91856 5.00453 5.12127 5.29002 5.36781 5.58890 5.74054 5.94919 6.27439 6.38564 6.49609 6.52383 6.81737 7.08499 7.19108 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 O -0.336 6.336 3 C 0.075 3.925 4 C 0.086 3.914 5 O -0.315 6.315 6 C 0.038 3.962 7 C 0.512 3.488 8 O -0.561 6.561 9 N -0.673 5.673 10 C 0.132 3.868 11 C 0.520 3.480 12 N -0.833 5.833 13 O -0.584 6.584 14 C -0.105 4.105 15 C 0.095 3.905 16 H 0.096 0.904 17 O -0.554 6.554 18 C -0.166 4.166 19 C -0.158 4.158 20 C -0.110 4.110 21 C -0.115 4.115 22 C -0.086 4.086 23 O -0.551 6.551 24 Si 0.778 3.222 25 C -0.152 4.152 26 H 0.109 0.891 27 H 0.062 0.938 28 H 0.066 0.934 29 H 0.131 0.869 30 H 0.131 0.869 31 H 0.429 0.571 32 H 0.405 0.595 33 H 0.417 0.583 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.399 0.601 37 H 0.091 0.909 38 H 0.061 0.939 39 H 0.178 0.822 40 H 0.159 0.841 41 H 0.121 0.879 42 H 0.386 0.614 43 H -0.308 1.308 44 H -0.272 1.272 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.572 8.517 -2.135 12.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 O -0.251 6.251 3 C 0.030 3.970 4 C 0.040 3.960 5 O -0.229 6.229 6 C -0.040 4.040 7 C 0.298 3.702 8 O -0.437 6.437 9 N -0.331 5.331 10 C 0.041 3.959 11 C 0.303 3.697 12 N -0.397 5.397 13 O -0.462 6.462 14 C -0.142 4.142 15 C 0.035 3.965 16 H 0.113 0.887 17 O -0.362 6.362 18 C -0.206 4.206 19 C -0.176 4.176 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.194 4.194 23 O -0.359 6.359 24 Si 0.682 3.318 25 C -0.171 4.171 26 H 0.127 0.873 27 H 0.081 0.919 28 H 0.085 0.915 29 H 0.149 0.851 30 H 0.149 0.851 31 H 0.270 0.730 32 H 0.236 0.764 33 H 0.248 0.752 34 H 0.140 0.860 35 H 0.140 0.860 36 H 0.249 0.751 37 H 0.109 0.891 38 H 0.080 0.920 39 H 0.195 0.805 40 H 0.176 0.824 41 H 0.139 0.861 42 H 0.235 0.765 43 H -0.236 1.236 44 H -0.198 1.198 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 7.835 7.682 -1.784 11.117 hybrid contribution -1.078 -0.414 1.103 1.597 sum 6.757 7.268 -0.681 9.948 Atomic orbital electron populations 1.23275 0.76852 1.05113 1.02129 1.86193 1.22981 1.26787 1.89118 1.18695 0.89991 0.85557 1.02757 1.18590 0.88123 0.86537 1.02739 1.86227 1.18215 1.29146 1.89318 1.22746 0.79334 0.94560 1.07341 1.20712 0.82750 0.91137 0.75574 1.90848 1.63994 1.40113 1.48793 1.45105 1.05034 1.08223 1.74725 1.21421 0.97641 0.85221 0.91634 1.20974 0.75360 0.86447 0.86913 1.43694 1.67725 1.19330 1.08924 1.90738 1.48617 1.19016 1.87836 1.23349 0.90093 1.06709 0.94095 1.22574 0.93860 0.87309 0.92715 0.88657 1.86324 1.91356 1.29971 1.28514 1.23926 1.00652 1.00129 0.95855 1.21384 1.02306 0.89192 1.04732 1.21052 0.92389 0.99150 1.00201 1.20115 0.94484 0.94636 1.02339 1.25333 1.02244 1.02325 0.89536 1.86574 1.37397 1.95598 1.16330 0.93951 0.77333 0.72264 0.88207 1.21021 1.00471 0.90580 1.05024 0.87285 0.91933 0.91493 0.85137 0.85129 0.72995 0.76392 0.75187 0.85997 0.86041 0.75063 0.89078 0.92046 0.80520 0.82399 0.86144 0.76454 1.23649 1.19770 0.84214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.07 9.81 113.37 1.11 1.18 16 2 O -0.34 -3.96 10.28 -79.54 -0.82 -4.78 16 3 C 0.08 0.61 6.70 22.57 0.15 0.76 16 4 C 0.09 0.44 6.70 22.57 0.15 0.59 16 5 O -0.32 -2.61 9.45 -67.05 -0.63 -3.25 16 6 C 0.04 -0.12 5.22 71.24 0.37 0.25 16 7 C 0.51 1.77 7.46 87.66 0.65 2.43 16 8 O -0.56 -9.67 15.22 16.00 0.24 -9.42 16 9 N -0.67 3.02 4.56 -423.91 -1.93 1.08 16 10 C 0.13 0.01 0.88 3.39 0.00 0.02 16 11 C 0.52 3.48 6.47 87.66 0.57 4.05 16 12 N -0.83 1.41 8.82 -173.53 -1.53 -0.12 16 13 O -0.58 -10.48 16.72 -3.03 -0.05 -10.53 16 14 C -0.10 0.74 7.18 31.12 0.22 0.97 16 15 C 0.10 -0.48 5.28 31.12 0.16 -0.32 16 16 H 0.10 -0.73 8.14 -2.39 -0.02 -0.75 16 17 O -0.55 3.63 13.09 -148.98 -1.95 1.68 16 18 C -0.17 -0.62 6.63 31.12 0.21 -0.42 16 19 C -0.16 0.54 9.04 22.35 0.20 0.74 16 20 C -0.11 0.43 8.66 22.27 0.19 0.63 16 21 C -0.12 0.04 5.35 -19.86 -0.11 -0.06 16 22 C -0.09 0.14 2.80 71.24 0.20 0.34 16 23 O -0.55 -1.03 12.83 -148.98 -1.91 -2.94 16 24 Si 0.78 -3.55 29.88 68.60 2.05 -1.50 16 25 C -0.15 -0.56 8.67 22.35 0.19 -0.37 16 26 H 0.11 0.10 8.14 -2.38 -0.02 0.08 16 27 H 0.06 0.07 7.66 -2.39 -0.02 0.05 16 28 H 0.07 0.02 7.66 -2.39 -0.02 0.00 16 29 H 0.13 -1.44 7.65 -2.39 -0.02 -1.46 16 30 H 0.13 -1.35 7.68 -2.39 -0.02 -1.37 16 31 H 0.43 -5.49 8.64 -92.71 -0.80 -6.29 16 32 H 0.40 -0.67 8.93 -92.71 -0.83 -1.50 16 33 H 0.42 -3.94 8.76 -92.71 -0.81 -4.75 16 34 H 0.12 -1.50 8.09 -2.39 -0.02 -1.52 16 35 H 0.12 -0.94 8.09 -2.38 -0.02 -0.96 16 36 H 0.40 -4.67 9.12 -74.06 -0.68 -5.34 16 37 H 0.09 0.70 7.40 -2.39 -0.02 0.68 16 38 H 0.06 0.54 7.55 -2.38 -0.02 0.52 16 39 H 0.18 -2.12 6.30 -2.91 -0.02 -2.14 16 40 H 0.16 -1.48 4.83 -2.91 -0.01 -1.50 16 41 H 0.12 -0.32 7.96 -2.38 -0.02 -0.34 16 42 H 0.39 -1.49 8.70 -74.06 -0.64 -2.14 16 43 H -0.31 -1.23 7.11 99.48 0.71 -0.53 16 44 H -0.27 0.67 7.01 99.48 0.70 1.36 16 45 H 0.14 0.34 6.30 -2.91 -0.02 0.32 16 Total: 0.00 -41.70 379.45 -4.86 -46.56 By element: Atomic # 1 Polarization: -24.95 SS G_CDS: -2.61 Total: -27.57 kcal Atomic # 6 Polarization: 6.50 SS G_CDS: 4.29 Total: 10.79 kcal Atomic # 7 Polarization: 4.43 SS G_CDS: -3.47 Total: 0.97 kcal Atomic # 8 Polarization: -24.13 SS G_CDS: -5.12 Total: -29.25 kcal Atomic # 14 Polarization: -3.55 SS G_CDS: 2.05 Total: -1.50 kcal Total: -41.70 -4.86 -46.56 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_60476.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -115.037 kcal (2) G-P(sol) polarization free energy of solvation -41.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -156.734 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.560 kcal (6) G-S(sol) free energy of system = (1) + (5) -161.597 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds