Wall clock time and date at job start Sat Mar 6 2021 22:42:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46901 * 110.99583 * 2 1 4 4 C 1.50692 * 109.47370 * 66.04853 * 3 2 1 5 5 O 1.21281 * 120.00154 * 359.97438 * 4 3 2 6 6 N 1.34775 * 120.00117 * 180.02562 * 4 3 2 7 7 C 1.46502 * 120.00162 * 174.99227 * 6 4 3 8 8 C 1.50697 * 112.84574 * 293.72284 * 7 6 4 9 9 N 1.34770 * 120.00402 * 323.89438 * 8 7 6 10 10 O 1.21285 * 119.99711 * 143.90187 * 8 7 6 11 11 C 1.53785 * 113.61523 * 162.41852 * 7 6 4 12 12 C 1.53781 * 87.07934 * 220.01719 * 11 7 6 13 13 H 1.09000 * 113.61305 * 270.88375 * 12 11 7 14 14 O 1.42904 * 113.69126 * 139.99322 * 12 11 7 15 15 C 1.53784 * 113.61449 * 64.91808 * 7 6 4 16 16 C 1.39677 * 111.00023 * 236.04764 * 2 1 3 17 17 C 1.38887 * 120.07193 * 243.90815 * 16 2 1 18 18 C 1.50697 * 120.03996 * 0.02562 * 17 16 2 19 19 O 1.42895 * 109.47223 * 74.99981 * 18 17 16 20 20 Si 1.86296 * 109.47266 * 195.00141 * 18 17 16 21 21 C 1.38125 * 119.92419 * 180.02562 * 17 16 2 22 22 C 1.38272 * 120.07414 * 359.97438 * 21 17 16 23 23 C 1.50697 * 119.92518 * 179.97438 * 22 21 17 24 24 F 1.39901 * 109.47325 * 89.99823 * 23 22 21 25 25 F 1.39901 * 109.46882 * 210.00354 * 23 22 21 26 26 F 1.39910 * 109.47137 * 329.99873 * 23 22 21 27 27 C 1.38304 * 120.14669 * 0.02562 * 22 21 17 28 28 C 1.38080 * 120.08056 * 359.97415 * 27 22 21 29 29 H 1.09001 * 109.46953 * 183.95633 * 1 2 3 30 30 H 1.09000 * 109.47121 * 303.95391 * 1 2 3 31 31 H 1.08996 * 109.47615 * 63.95666 * 1 2 3 32 32 H 1.09002 * 109.46430 * 186.04990 * 3 2 1 33 33 H 1.09007 * 109.46963 * 306.04353 * 3 2 1 34 34 H 0.97001 * 120.00058 * 354.98182 * 6 4 3 35 35 H 0.97004 * 120.00092 * 354.98742 * 9 8 7 36 36 H 0.96998 * 120.00267 * 174.98217 * 9 8 7 37 37 H 1.09003 * 113.61222 * 334.56450 * 11 7 6 38 38 H 1.08997 * 113.61143 * 105.46636 * 11 7 6 39 39 H 0.96696 * 113.99621 * 82.45985 * 14 12 11 40 40 H 1.09000 * 113.61275 * 254.53036 * 15 7 6 41 41 H 1.08992 * 113.61482 * 25.43598 * 15 7 6 42 42 H 1.09002 * 109.47274 * 314.99865 * 18 17 16 43 43 H 0.96697 * 114.00495 * 180.02562 * 19 18 17 44 44 H 1.48500 * 110.00359 * 178.68121 * 20 18 17 45 45 H 1.48500 * 110.00181 * 300.00269 * 20 18 17 46 46 H 1.07994 * 119.96526 * 180.27729 * 21 17 16 47 47 H 1.08006 * 119.95830 * 179.97438 * 27 22 21 48 48 H 1.07992 * 120.04346 * 179.97438 * 28 27 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0471 1.2984 5 8 1.0047 1.4457 2.1407 6 7 2.0179 3.3202 1.5232 7 6 1.5770 4.0135 2.7362 8 6 0.0892 4.2509 2.7663 9 7 -0.5702 4.5410 1.6274 10 8 -0.5149 4.1810 3.8157 11 6 2.4091 5.2634 3.0683 12 6 2.3173 4.8363 4.5428 13 1 1.4437 5.2344 5.0590 14 8 3.5300 5.0305 5.2734 15 6 2.1290 3.3978 4.0328 16 6 1.9696 -0.7283 -1.0817 17 6 2.7125 -1.8807 -0.8606 18 6 2.9793 -2.3478 0.5471 19 8 1.7929 -2.9325 1.0879 20 14 4.3450 -3.6148 0.5326 21 6 3.2065 -2.5983 -1.9325 22 6 2.9616 -2.1707 -3.2244 23 6 3.5027 -2.9559 -4.3914 24 9 2.5649 -3.9181 -4.7811 25 9 3.7534 -2.0890 -5.4605 26 9 4.6923 -3.5894 -4.0159 27 6 2.2222 -1.0235 -3.4480 28 6 1.7254 -0.3015 -2.3811 29 1 -0.3633 -1.0252 0.0709 30 1 -0.3633 0.5740 0.8524 31 1 -0.3634 0.4512 -0.9233 32 1 3.0796 1.3444 -0.1083 33 1 1.5610 1.9274 -0.8310 34 1 2.5842 3.7775 0.8820 35 1 -0.0782 4.6688 0.8012 36 1 -1.5368 4.6220 1.6337 37 1 3.4221 5.2328 2.6671 38 1 1.8952 6.2000 2.8522 39 1 3.6540 5.9334 5.5967 40 1 1.3891 2.8284 4.5953 41 1 3.0654 2.8572 3.8952 42 1 3.2784 -1.4984 1.1612 43 1 1.8914 -3.2557 1.9939 44 1 4.6396 -4.0601 1.9183 45 1 3.9498 -4.7782 -0.3015 46 1 3.7804 -3.4970 -1.7615 47 1 2.0331 -0.6921 -4.4585 48 1 1.1485 0.5945 -2.5564 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_6406254.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:42:01 Heat of formation + Delta-G solvation = -219.575050 kcal Electronic energy + Delta-G solvation = -40016.638502 eV Core-core repulsion = 34239.045072 eV Total energy + Delta-G solvation = -5777.593431 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.144 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -51.20919 -48.71639 -48.69214 -42.33144 -41.52870 -40.11467 -39.00368 -37.76697 -37.59516 -36.35216 -34.86282 -33.93549 -33.14561 -32.07208 -29.50444 -27.63171 -27.06854 -26.99716 -26.33372 -24.97088 -23.44930 -22.88166 -21.99879 -21.39027 -20.43931 -19.55714 -19.52034 -19.23483 -19.14030 -18.54112 -18.44960 -18.37159 -17.81115 -17.51551 -17.06562 -16.69861 -16.41089 -16.20000 -15.99394 -15.94992 -15.59810 -15.58425 -15.52631 -15.26824 -15.12150 -15.09324 -14.90428 -14.83506 -14.73411 -14.65376 -14.55405 -14.10900 -13.95109 -13.79259 -13.68959 -13.53153 -13.39168 -13.32017 -13.00078 -12.79398 -12.65385 -12.46856 -12.22984 -11.94276 -11.77652 -11.48364 -11.01089 -10.82857 -10.78135 -10.42892 -10.22965 -10.18555 -10.06902 -9.54343 -5.01621 -0.31783 0.03083 1.24201 1.28935 1.51373 1.56097 1.59426 1.82825 1.87377 2.17433 2.34106 2.62372 2.74494 2.93740 3.14065 3.26406 3.32659 3.41744 3.45819 3.62096 3.65940 3.68137 3.77718 3.87942 4.03629 4.09270 4.15147 4.17548 4.24384 4.35748 4.39892 4.48759 4.54499 4.57539 4.64279 4.68198 4.80062 4.88429 4.92139 4.96762 5.00462 5.05881 5.18152 5.30859 5.43224 5.68089 5.73913 6.16786 6.28752 6.50876 6.58027 6.84175 7.16782 7.24322 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.500 5.500 3 C 0.038 3.962 4 C 0.513 3.487 5 O -0.547 6.547 6 N -0.699 5.699 7 C 0.137 3.863 8 C 0.532 3.468 9 N -0.829 5.829 10 O -0.579 6.579 11 C -0.130 4.130 12 C 0.077 3.923 13 H 0.080 0.920 14 O -0.570 6.570 15 C -0.114 4.114 16 C 0.143 3.857 17 C -0.062 4.062 18 C -0.058 4.058 19 O -0.546 6.546 20 Si 0.741 3.259 21 C -0.072 4.072 22 C -0.187 4.187 23 C 0.508 3.492 24 F -0.185 7.185 25 F -0.174 7.174 26 F -0.179 7.179 27 C -0.050 4.050 28 C -0.140 4.140 29 H 0.053 0.947 30 H 0.074 0.926 31 H 0.049 0.951 32 H 0.133 0.867 33 H 0.109 0.891 34 H 0.428 0.572 35 H 0.417 0.583 36 H 0.408 0.592 37 H 0.134 0.866 38 H 0.101 0.899 39 H 0.399 0.601 40 H 0.053 0.947 41 H 0.098 0.902 42 H 0.091 0.909 43 H 0.390 0.610 44 H -0.287 1.287 45 H -0.294 1.294 46 H 0.138 0.862 47 H 0.159 0.841 48 H 0.165 0.835 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.080 10.077 -6.284 12.557 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 N -0.221 5.221 3 C -0.091 4.091 4 C 0.299 3.701 5 O -0.422 6.422 6 N -0.357 5.357 7 C 0.046 3.954 8 C 0.315 3.685 9 N -0.392 5.392 10 O -0.457 6.457 11 C -0.169 4.169 12 C 0.017 3.983 13 H 0.098 0.902 14 O -0.378 6.378 15 C -0.153 4.153 16 C 0.049 3.951 17 C -0.063 4.063 18 C -0.168 4.168 19 O -0.356 6.356 20 Si 0.647 3.353 21 C -0.090 4.090 22 C -0.189 4.189 23 C 0.454 3.546 24 F -0.167 7.167 25 F -0.155 7.155 26 F -0.161 7.161 27 C -0.068 4.068 28 C -0.159 4.159 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.068 0.932 32 H 0.151 0.849 33 H 0.126 0.874 34 H 0.268 0.732 35 H 0.248 0.752 36 H 0.240 0.760 37 H 0.152 0.848 38 H 0.120 0.880 39 H 0.249 0.751 40 H 0.072 0.928 41 H 0.116 0.884 42 H 0.109 0.891 43 H 0.239 0.761 44 H -0.214 1.214 45 H -0.222 1.222 46 H 0.156 0.844 47 H 0.176 0.824 48 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges 3.622 8.052 -5.059 10.176 hybrid contribution -1.315 0.174 -0.188 1.339 sum 2.307 8.226 -5.247 10.026 Atomic orbital electron populations 1.22433 0.84575 1.02440 1.01587 1.59014 1.09404 1.13066 1.40585 1.22224 1.04209 0.88013 0.94631 1.21001 0.78568 0.81363 0.89121 1.90793 1.40030 1.64286 1.47110 1.45674 1.53873 1.13088 1.23091 1.21213 0.90185 0.97000 0.87000 1.20380 0.89455 0.74828 0.83884 1.43582 1.11999 1.72616 1.11010 1.90772 1.69515 1.52809 1.32588 1.23906 1.01783 0.95258 0.95905 1.23145 0.87674 0.96288 0.91208 0.90195 1.86492 1.40012 1.36868 1.74472 1.23176 1.01009 0.96711 0.94367 1.18812 0.93913 0.93149 0.89230 1.19197 0.98665 0.94880 0.93536 1.24632 0.94622 1.04172 0.93354 1.86530 1.34090 1.80179 1.34752 0.94698 0.82727 0.78733 0.79158 1.20861 0.98143 0.99050 0.90959 1.19916 1.07060 0.99925 0.91986 1.18386 0.75519 0.77769 0.82946 1.93229 1.65583 1.65779 1.92098 1.93203 1.94239 1.69306 1.58753 1.93201 1.48312 1.83342 1.91228 1.21109 0.92760 0.91456 1.01512 1.21914 1.00874 1.01926 0.91234 0.92776 0.90739 0.93247 0.84923 0.87381 0.73221 0.75181 0.76018 0.84814 0.88038 0.75080 0.92826 0.88380 0.89142 0.76067 1.21354 1.22186 0.84436 0.82351 0.81755 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.01 9.02 127.69 1.15 1.16 16 2 N -0.50 1.01 3.71 -724.43 -2.69 -1.68 16 3 C 0.04 -0.35 5.03 85.55 0.43 0.08 16 4 C 0.51 -1.82 7.17 87.65 0.63 -1.19 16 5 O -0.55 -4.25 13.37 -3.03 -0.04 -4.29 16 6 N -0.70 6.59 4.79 -423.92 -2.03 4.56 16 7 C 0.14 -0.40 1.05 3.38 0.00 -0.39 16 8 C 0.53 1.28 6.60 87.66 0.58 1.86 16 9 N -0.83 5.05 8.78 -173.54 -1.52 3.53 16 10 O -0.58 -7.66 16.21 -3.04 -0.05 -7.71 16 11 C -0.13 1.02 7.22 31.12 0.22 1.25 16 12 C 0.08 0.02 4.82 31.12 0.15 0.17 16 13 H 0.08 0.24 7.63 -2.39 -0.02 0.22 16 14 O -0.57 -0.15 13.67 -148.98 -2.04 -2.18 16 15 C -0.11 -0.49 6.16 31.12 0.19 -0.29 16 16 C 0.14 -0.33 4.66 38.21 0.18 -0.15 16 17 C -0.06 -0.04 5.31 -19.74 -0.10 -0.15 16 18 C -0.06 -0.07 2.33 71.23 0.17 0.10 16 19 O -0.55 -2.75 12.85 -148.98 -1.92 -4.67 16 20 Si 0.74 0.20 30.20 68.60 2.07 2.27 16 21 C -0.07 -0.07 8.00 22.25 0.18 0.10 16 22 C -0.19 0.04 5.46 -19.84 -0.11 -0.07 16 23 C 0.51 1.09 3.36 71.24 0.24 1.32 16 24 F -0.19 -0.98 17.30 44.97 0.78 -0.20 16 25 F -0.17 -0.24 16.45 44.97 0.74 0.50 16 26 F -0.18 -0.63 16.46 44.97 0.74 0.11 16 27 C -0.05 0.24 9.39 22.25 0.21 0.44 16 28 C -0.14 0.93 8.66 22.40 0.19 1.12 16 29 H 0.05 0.27 8.14 -2.39 -0.02 0.25 16 30 H 0.07 0.34 5.82 -2.39 -0.01 0.33 16 31 H 0.05 -0.24 7.34 -2.39 -0.02 -0.26 16 32 H 0.13 -1.75 8.06 -2.39 -0.02 -1.77 16 33 H 0.11 -1.73 7.48 -2.38 -0.02 -1.75 16 34 H 0.43 -7.70 8.71 -92.71 -0.81 -8.50 16 35 H 0.42 -5.59 8.47 -92.71 -0.79 -6.38 16 36 H 0.41 -2.52 8.93 -92.71 -0.83 -3.35 16 37 H 0.13 -1.60 8.14 -2.39 -0.02 -1.62 16 38 H 0.10 -1.09 8.10 -2.39 -0.02 -1.11 16 39 H 0.40 -3.42 9.12 -74.06 -0.68 -4.10 16 40 H 0.05 0.66 7.63 -2.39 -0.02 0.64 16 41 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 42 H 0.09 -0.02 7.78 -2.39 -0.02 -0.04 16 43 H 0.39 -0.34 8.74 -74.06 -0.65 -0.98 16 44 H -0.29 -1.45 7.11 99.48 0.71 -0.75 16 45 H -0.29 -2.02 6.74 99.48 0.67 -1.35 16 46 H 0.14 0.19 4.45 -2.91 -0.01 0.17 16 47 H 0.16 -1.35 7.60 -2.91 -0.02 -1.37 16 48 H 0.16 -2.09 7.14 -2.91 -0.02 -2.11 16 Total: 0.00 -33.53 409.31 -4.27 -37.80 By element: Atomic # 1 Polarization: -30.79 SS G_CDS: -2.62 Total: -33.41 kcal Atomic # 6 Polarization: 1.05 SS G_CDS: 4.31 Total: 5.36 kcal Atomic # 7 Polarization: 12.66 SS G_CDS: -6.24 Total: 6.41 kcal Atomic # 8 Polarization: -14.81 SS G_CDS: -4.04 Total: -18.85 kcal Atomic # 9 Polarization: -1.84 SS G_CDS: 2.26 Total: 0.42 kcal Atomic # 14 Polarization: 0.20 SS G_CDS: 2.07 Total: 2.27 kcal Total: -33.53 -4.27 -37.80 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_6406254.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -181.774 kcal (2) G-P(sol) polarization free energy of solvation -33.532 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -215.307 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.268 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -219.575 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds