Wall clock time and date at job start Sat Mar 6 2021 22:42:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33817 * 122.44788 * 2 1 4 4 C 1.50703 * 124.52036 * 0.02562 * 3 2 1 5 5 O 1.42896 * 109.47229 * 30.00142 * 4 3 2 6 6 Si 1.86304 * 109.46920 * 150.00369 * 4 3 2 7 7 S 1.70612 * 110.95359 * 179.78257 * 3 2 1 8 8 C 1.75837 * 91.56296 * 0.30401 * 7 3 2 9 9 C 1.46585 * 125.45832 * 179.97438 * 8 7 3 10 10 O 1.21699 * 120.00062 * 179.69259 * 9 8 7 11 11 N 1.34772 * 119.99860 * 359.69623 * 9 8 7 12 12 C 1.46497 * 119.99998 * 184.98904 * 11 9 8 13 13 C 1.50699 * 112.84767 * 305.62260 * 12 11 9 14 14 N 1.34778 * 120.00228 * 325.44823 * 13 12 11 15 15 O 1.21282 * 120.00183 * 145.45283 * 13 12 11 16 16 C 1.53785 * 113.61685 * 174.43059 * 12 11 9 17 17 C 1.53787 * 87.07935 * 270.88008 * 16 12 11 18 18 H 1.08995 * 113.61407 * 220.01672 * 17 16 12 19 19 O 1.42901 * 113.61278 * 89.11048 * 17 16 12 20 20 C 1.53777 * 113.61861 * 76.92862 * 12 11 9 21 21 C 1.36652 * 109.08269 * 359.69969 * 8 7 3 22 22 H 1.09002 * 109.47139 * 270.00243 * 1 2 3 23 23 H 1.09000 * 109.47630 * 30.00261 * 1 2 3 24 24 H 1.08998 * 109.47153 * 150.00290 * 1 2 3 25 25 H 1.09005 * 109.46791 * 270.00023 * 4 3 2 26 26 H 0.96690 * 114.00269 * 60.00386 * 5 4 3 27 27 H 1.48498 * 109.99795 * 179.97438 * 6 4 3 28 28 H 1.48494 * 109.99708 * 301.31542 * 6 4 3 29 29 H 0.97004 * 120.00340 * 5.26096 * 11 9 8 30 30 H 0.97005 * 119.99625 * 355.04810 * 14 13 12 31 31 H 0.96996 * 119.99944 * 175.03798 * 14 13 12 32 32 H 1.09000 * 113.61615 * 25.42841 * 16 12 11 33 33 H 1.09000 * 113.61830 * 156.25481 * 16 12 11 34 34 H 0.96701 * 113.99926 * 179.97438 * 19 17 16 35 35 H 1.09001 * 113.61701 * 203.66620 * 20 12 11 36 36 H 1.09004 * 113.61221 * 334.57084 * 20 12 11 37 37 H 1.07996 * 123.34689 * 180.24858 * 21 8 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2250 1.1293 0.0000 4 6 1.6354 2.5162 0.0006 5 8 0.3756 2.4979 0.6747 6 14 2.7928 3.6826 0.8786 7 16 3.8969 0.7893 0.0060 8 6 3.5937 -0.9427 -0.0007 9 6 4.6231 -1.9863 -0.0002 10 8 4.3002 -3.1596 0.0004 11 7 5.9272 -1.6463 -0.0003 12 6 6.9549 -2.6845 -0.1101 13 6 6.8139 -3.7603 0.9358 14 7 6.3729 -3.4465 2.1702 15 8 7.0973 -4.9085 0.6668 16 6 8.3831 -2.1274 -0.2319 17 6 8.1622 -2.1103 -1.7538 18 1 9.0351 -2.4258 -2.3252 19 8 7.5924 -0.8917 -2.2358 20 6 7.1300 -3.2296 -1.5373 21 6 2.2445 -1.1601 -0.0004 22 1 -0.3633 0.0000 1.0277 23 1 -0.3634 0.8899 -0.5139 24 1 -0.3633 -0.8900 -0.5138 25 1 1.4929 2.8507 -1.0270 26 1 0.4267 2.2093 1.5961 27 1 2.2230 5.0539 0.8854 28 1 3.0204 3.2197 2.2710 29 1 6.1856 -0.7144 0.0763 30 1 6.2148 -2.5194 2.4075 31 1 6.2135 -4.1478 2.8210 32 1 8.5033 -1.1352 0.2030 33 1 9.1539 -2.8272 0.0908 34 1 7.4514 -0.8748 -3.1923 35 1 7.5583 -4.2313 -1.5727 36 1 6.2386 -3.1271 -2.1562 37 1 1.8019 -2.1452 -0.0001 There are 54 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 54 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_6739946.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:42:10 Heat of formation + Delta-G solvation = -91.412906 kcal Electronic energy + Delta-G solvation = -24504.686132 eV Core-core repulsion = 20762.203170 eV Total energy + Delta-G solvation = -3742.482962 eV No. of doubly occupied orbitals = 54 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 313.086 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.30426 -40.45435 -39.66026 -39.18237 -37.42526 -36.11236 -34.77273 -33.99838 -32.02295 -30.23873 -27.56974 -27.03939 -25.97012 -24.47452 -22.54202 -21.86863 -20.58342 -20.10121 -19.52460 -19.04309 -18.17875 -17.90637 -17.56674 -17.37562 -16.72812 -16.48218 -16.14219 -16.03593 -15.69284 -15.56980 -15.34215 -14.81650 -14.59252 -14.42755 -13.91879 -13.78645 -13.58126 -13.49862 -13.24642 -13.13027 -12.98242 -12.56741 -12.38779 -12.22556 -11.82296 -11.73201 -11.43711 -11.34661 -10.89547 -10.87649 -10.74935 -10.23796 -9.67746 -9.36112 -5.10192 -0.67781 0.31469 0.71900 1.06729 1.31174 1.35626 1.55707 1.78992 1.89547 2.00926 2.48070 3.00811 3.24438 3.28978 3.44517 3.55298 3.65367 3.70210 3.94053 4.09320 4.28211 4.32209 4.50573 4.56788 4.61286 4.70778 4.77249 4.79674 4.84136 4.84971 4.89374 4.98820 5.24243 5.37821 5.42828 5.74899 6.21253 6.32415 6.37385 6.86817 6.93933 7.17895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C -0.110 4.110 3 C -0.238 4.238 4 C -0.039 4.039 5 O -0.530 6.530 6 Si 0.739 3.261 7 S 0.281 5.719 8 C -0.286 4.286 9 C 0.592 3.408 10 O -0.559 6.559 11 N -0.680 5.680 12 C 0.126 3.874 13 C 0.531 3.469 14 N -0.835 5.835 15 O -0.583 6.583 16 C -0.110 4.110 17 C 0.098 3.902 18 H 0.100 0.900 19 O -0.554 6.554 20 C -0.165 4.165 21 C -0.059 4.059 22 H 0.075 0.925 23 H 0.081 0.919 24 H 0.059 0.941 25 H 0.141 0.859 26 H 0.387 0.613 27 H -0.277 1.277 28 H -0.271 1.271 29 H 0.420 0.580 30 H 0.410 0.590 31 H 0.405 0.595 32 H 0.116 0.884 33 H 0.123 0.877 34 H 0.401 0.599 35 H 0.098 0.902 36 H 0.066 0.934 37 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.875 8.417 -0.349 9.273 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.122 4.122 3 C -0.358 4.358 4 C -0.150 4.150 5 O -0.339 6.339 6 Si 0.640 3.360 7 S 0.551 5.449 8 C -0.406 4.406 9 C 0.380 3.620 10 O -0.439 6.439 11 N -0.335 5.335 12 C 0.035 3.965 13 C 0.315 3.685 14 N -0.397 5.397 15 O -0.462 6.462 16 C -0.147 4.147 17 C 0.038 3.962 18 H 0.118 0.882 19 O -0.363 6.363 20 C -0.204 4.204 21 C -0.093 4.093 22 H 0.093 0.907 23 H 0.100 0.900 24 H 0.078 0.922 25 H 0.158 0.842 26 H 0.237 0.763 27 H -0.203 1.203 28 H -0.197 1.197 29 H 0.259 0.741 30 H 0.240 0.760 31 H 0.236 0.764 32 H 0.134 0.866 33 H 0.141 0.859 34 H 0.252 0.748 35 H 0.116 0.884 36 H 0.085 0.915 37 H 0.157 0.843 Dipole moment (debyes) X Y Z Total from point charges 5.145 8.759 0.030 10.158 hybrid contribution -2.724 -1.517 0.619 3.179 sum 2.421 7.241 0.649 7.663 Atomic orbital electron populations 1.20599 0.88480 1.03045 1.02959 1.18702 0.98727 0.90562 1.04245 1.24721 0.99903 1.00841 1.10324 1.24683 0.91183 0.94667 1.04465 1.86621 1.28083 1.89221 1.29937 0.94690 0.83351 0.76689 0.81303 1.82417 1.00893 0.94971 1.66667 1.24497 0.97227 0.98766 1.20074 1.17225 0.82196 0.87214 0.75350 1.90898 1.82053 1.20014 1.50899 1.45276 1.03275 1.10298 1.74653 1.21543 0.91704 0.88302 0.94939 1.20696 0.74859 0.89120 0.83819 1.43667 1.68604 1.13373 1.14047 1.90721 1.51978 1.22415 1.81081 1.23382 0.91292 1.04109 0.95941 1.22548 0.94518 0.83814 0.95295 0.88187 1.86338 1.84838 1.35043 1.30058 1.24006 1.01484 1.01215 0.93699 1.20704 0.91450 1.00023 0.97123 0.90653 0.89993 0.92210 0.84191 0.76264 1.20259 1.19659 0.74087 0.75959 0.76396 0.86594 0.85900 0.74838 0.88377 0.91512 0.84309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 0.07 8.67 71.24 0.62 0.69 16 2 C -0.11 -0.05 5.75 -21.05 -0.12 -0.17 16 3 C -0.24 0.67 5.54 24.68 0.14 0.81 16 4 C -0.04 0.19 2.76 71.24 0.20 0.38 16 5 O -0.53 1.35 9.85 -148.98 -1.47 -0.12 16 6 Si 0.74 -4.27 31.31 68.60 2.15 -2.12 16 7 S 0.28 -1.54 19.79 -56.49 -1.12 -2.66 16 8 C -0.29 -0.52 6.45 24.08 0.16 -0.36 16 9 C 0.59 3.05 7.36 86.42 0.64 3.69 16 10 O -0.56 -8.09 15.63 -4.34 -0.07 -8.16 16 11 N -0.68 0.81 4.20 -427.94 -1.80 -0.99 16 12 C 0.13 0.17 1.01 3.38 0.00 0.18 16 13 C 0.53 4.17 5.82 87.66 0.51 4.69 16 14 N -0.83 -1.42 8.54 -173.53 -1.48 -2.90 16 15 O -0.58 -9.95 16.76 -3.04 -0.05 -10.00 16 16 C -0.11 0.59 7.16 31.12 0.22 0.81 16 17 C 0.10 -0.51 5.28 31.12 0.16 -0.35 16 18 H 0.10 -0.84 8.14 -2.39 -0.02 -0.86 16 19 O -0.55 3.73 13.07 -148.98 -1.95 1.78 16 20 C -0.16 -0.41 7.07 31.12 0.22 -0.19 16 21 C -0.06 -0.21 9.80 21.72 0.21 0.01 16 22 H 0.07 -0.18 8.14 -2.39 -0.02 -0.20 16 23 H 0.08 -0.01 6.42 -2.39 -0.02 -0.03 16 24 H 0.06 -0.02 8.13 -2.39 -0.02 -0.03 16 25 H 0.14 -0.96 7.96 -2.38 -0.02 -0.98 16 26 H 0.39 -2.78 8.66 -74.06 -0.64 -3.42 16 27 H -0.28 -0.28 7.11 99.48 0.71 0.43 16 28 H -0.27 0.43 7.11 99.48 0.71 1.14 16 29 H 0.42 -2.75 7.74 -92.71 -0.72 -3.47 16 30 H 0.41 -1.59 8.43 -92.70 -0.78 -2.37 16 31 H 0.40 0.45 8.93 -92.71 -0.83 -0.38 16 32 H 0.12 -1.11 8.10 -2.39 -0.02 -1.13 16 33 H 0.12 -0.73 8.09 -2.39 -0.02 -0.75 16 34 H 0.40 -5.07 9.12 -74.06 -0.68 -5.75 16 35 H 0.10 0.57 7.35 -2.39 -0.02 0.55 16 36 H 0.07 0.37 8.14 -2.39 -0.02 0.35 16 37 H 0.14 0.78 8.06 -2.91 -0.02 0.76 16 Total: 0.00 -25.88 327.46 -5.25 -31.13 By element: Atomic # 1 Polarization: -13.72 SS G_CDS: -2.42 Total: -16.14 kcal Atomic # 6 Polarization: 7.23 SS G_CDS: 2.96 Total: 10.19 kcal Atomic # 7 Polarization: -0.61 SS G_CDS: -3.28 Total: -3.89 kcal Atomic # 8 Polarization: -12.96 SS G_CDS: -3.53 Total: -16.50 kcal Atomic # 14 Polarization: -4.27 SS G_CDS: 2.15 Total: -2.12 kcal Atomic # 16 Polarization: -1.54 SS G_CDS: -1.12 Total: -2.66 kcal Total: -25.88 -5.25 -31.13 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_6739946.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.286 kcal (2) G-P(sol) polarization free energy of solvation -25.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.413 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds