Wall clock time and date at job start Sat Mar 6 2021 22:42:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 C 1.37934 * 120.06931 * 2 1 4 4 C 1.38380 * 120.14166 * 180.02562 * 3 2 1 5 5 C 1.50706 * 119.85691 * 180.02562 * 4 3 2 6 6 C 1.38341 * 120.29428 * 359.97438 * 4 3 2 7 7 C 1.50700 * 119.92827 * 180.27301 * 6 4 3 8 8 O 1.42895 * 109.47400 * 284.72954 * 7 6 4 9 9 Si 1.86302 * 109.47103 * 164.72828 * 7 6 4 10 10 C 1.37980 * 120.14358 * 0.02562 * 6 4 3 11 11 C 1.39554 * 119.85066 * 359.97438 * 10 6 4 12 12 C 1.47853 * 120.14199 * 179.97438 * 11 10 6 13 13 O 1.21551 * 119.99727 * 175.50243 * 12 11 10 14 14 N 1.34772 * 119.99795 * 355.50679 * 12 11 10 15 15 C 1.46503 * 119.99856 * 184.94787 * 14 12 11 16 16 C 1.50699 * 112.85093 * 60.48308 * 15 14 12 17 17 N 1.34779 * 119.99901 * 36.68643 * 16 15 14 18 18 O 1.21283 * 120.00213 * 216.69384 * 16 15 14 19 19 C 1.53778 * 113.61374 * 289.29084 * 15 14 12 20 20 C 1.53958 * 87.01953 * 220.04557 * 19 15 14 21 21 H 1.08997 * 113.53633 * 270.80972 * 20 19 15 22 22 O 1.42899 * 113.74395 * 139.94155 * 20 19 15 23 23 C 1.53777 * 113.61463 * 191.67935 * 15 14 12 24 24 H 1.09001 * 109.46978 * 262.94988 * 1 2 3 25 25 H 1.08993 * 109.47482 * 22.95319 * 1 2 3 26 26 H 1.09002 * 109.47590 * 142.95748 * 1 2 3 27 27 H 1.07998 * 119.92878 * 0.04816 * 3 2 1 28 28 H 1.08992 * 109.47144 * 269.97943 * 5 4 3 29 29 H 1.09001 * 109.46622 * 29.97842 * 5 4 3 30 30 H 1.08998 * 109.47167 * 149.97685 * 5 4 3 31 31 H 1.09003 * 109.47055 * 44.73179 * 7 6 4 32 32 H 0.96703 * 114.00184 * 59.99836 * 8 7 6 33 33 H 1.48497 * 110.00334 * 178.68480 * 9 7 6 34 34 H 1.48511 * 109.99869 * 300.00378 * 9 7 6 35 35 H 1.08004 * 120.07395 * 180.02562 * 10 6 4 36 36 H 0.97000 * 120.00759 * 4.94251 * 14 12 11 37 37 H 0.97001 * 120.00106 * 5.01412 * 17 16 15 38 38 H 0.96997 * 120.00196 * 185.00649 * 17 16 15 39 39 H 1.09006 * 113.61294 * 334.56217 * 19 15 14 40 40 H 1.08998 * 113.61665 * 105.47046 * 19 15 14 41 41 H 0.96697 * 113.99884 * 82.39951 * 22 20 19 42 42 H 1.08996 * 113.61799 * 254.52788 * 23 15 14 43 43 H 1.09004 * 113.61583 * 25.43741 * 23 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1937 0.0000 4 6 3.5819 1.1955 -0.0005 5 6 4.3305 2.5034 0.0001 6 6 4.2813 0.0018 -0.0005 7 6 5.7882 0.0134 0.0051 8 8 6.2668 0.3624 -1.2953 9 14 6.4205 -1.6773 0.4664 10 6 3.6021 -1.1992 -0.0005 11 6 2.2065 -1.2080 0.0000 12 6 1.4722 -2.4912 -0.0006 13 8 0.2595 -2.4975 0.0824 14 7 2.1474 -3.6540 -0.0931 15 6 1.4163 -4.9188 -0.2029 16 6 0.5390 -4.9833 -1.4265 17 7 0.9519 -4.4256 -2.5819 18 8 -0.5387 -5.5369 -1.3715 19 6 0.6972 -5.3292 1.0930 20 6 1.1413 -6.7714 0.7877 21 1 0.4305 -7.3251 0.1743 22 8 1.5635 -7.5000 1.9422 23 6 2.3029 -6.1611 -0.0144 24 1 -0.3633 -0.1261 1.0199 25 1 -0.3634 0.9462 -0.4007 26 1 -0.3634 -0.8203 -0.6191 27 1 1.6581 2.1290 0.0008 28 1 4.5109 2.8193 -1.0274 29 1 3.7386 3.2605 0.5143 30 1 5.2834 2.3764 0.5138 31 1 6.1433 0.7446 0.7313 32 1 5.9760 1.2325 -1.6011 33 1 7.9052 -1.6878 0.4447 34 1 5.9296 -2.0520 1.8170 35 1 4.1492 -2.1304 -0.0001 36 1 3.1174 -3.6535 -0.0870 37 1 1.8427 -4.0471 -2.6466 38 1 0.3584 -4.4029 -3.3488 39 1 1.1499 -4.9144 1.9937 40 1 -0.3829 -5.1871 1.0568 41 1 0.8374 -7.8861 2.4508 42 1 2.5172 -6.6896 -0.9433 43 1 3.1953 -5.9741 0.5830 There are 59 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 59 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14243910_9599494.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sat Mar 6 2021 22:42:19 Heat of formation + Delta-G solvation = -103.511475 kcal Electronic energy + Delta-G solvation = -28282.286448 eV Core-core repulsion = 24294.588987 eV Total energy + Delta-G solvation = -3987.697461 eV No. of doubly occupied orbitals = 59 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 321.145 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.42577 -41.31022 -39.78566 -38.97102 -37.61054 -36.49667 -34.88541 -34.44930 -34.30609 -32.95727 -29.43040 -28.65386 -27.04511 -26.47125 -25.50329 -23.85474 -23.24281 -22.23939 -21.02521 -20.42796 -19.29481 -18.79761 -18.32193 -18.21776 -17.77363 -17.02157 -16.59829 -16.45912 -16.25409 -16.09118 -15.71737 -15.60531 -15.36493 -14.95838 -14.86861 -14.79977 -14.53896 -14.12907 -13.84415 -13.75533 -13.52579 -13.44568 -13.31512 -13.00045 -12.80221 -12.70741 -12.57926 -12.42314 -12.11959 -11.89074 -11.41202 -11.34194 -11.22380 -11.01563 -10.76087 -10.65998 -10.31659 -9.91174 -9.65685 -4.96247 -0.30754 0.15829 1.29490 1.36238 1.59791 1.68296 1.85621 1.98117 2.33919 2.61592 3.17804 3.23496 3.37941 3.44542 3.51426 3.62483 3.70887 3.75317 3.83278 3.84900 4.06097 4.10120 4.18107 4.36823 4.47498 4.52281 4.59129 4.63752 4.67339 4.69359 4.74477 4.79009 4.84740 4.88207 4.91267 5.04199 5.07553 5.18186 5.28507 5.41857 5.47326 5.75380 5.76768 6.26101 6.36773 6.60958 6.78535 7.04894 7.17548 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.026 4.026 3 C -0.134 4.134 4 C -0.040 4.040 5 C -0.132 4.132 6 C -0.135 4.135 7 C -0.085 4.085 8 O -0.544 6.544 9 Si 0.798 3.202 10 C -0.061 4.061 11 C -0.154 4.154 12 C 0.560 3.440 13 O -0.547 6.547 14 N -0.698 5.698 15 C 0.132 3.868 16 C 0.536 3.464 17 N -0.830 5.830 18 O -0.574 6.574 19 C -0.151 4.151 20 C 0.082 3.918 21 H 0.084 0.916 22 O -0.566 6.566 23 C -0.103 4.103 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.077 0.923 27 H 0.145 0.855 28 H 0.096 0.904 29 H 0.080 0.920 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.375 0.625 33 H -0.297 1.297 34 H -0.263 1.263 35 H 0.153 0.847 36 H 0.422 0.578 37 H 0.415 0.585 38 H 0.409 0.591 39 H 0.101 0.899 40 H 0.059 0.941 41 H 0.397 0.603 42 H 0.106 0.894 43 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.951 2.636 -2.004 6.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.027 4.027 3 C -0.151 4.151 4 C -0.041 4.041 5 C -0.188 4.188 6 C -0.136 4.136 7 C -0.193 4.193 8 O -0.351 6.351 9 Si 0.701 3.299 10 C -0.079 4.079 11 C -0.157 4.157 12 C 0.349 3.651 13 O -0.425 6.425 14 N -0.355 5.355 15 C 0.041 3.959 16 C 0.319 3.681 17 N -0.394 5.394 18 O -0.452 6.452 19 C -0.190 4.190 20 C 0.022 3.978 21 H 0.102 0.898 22 O -0.374 6.374 23 C -0.141 4.141 24 H 0.085 0.915 25 H 0.091 0.909 26 H 0.096 0.904 27 H 0.163 0.837 28 H 0.114 0.886 29 H 0.099 0.901 30 H 0.095 0.905 31 H 0.100 0.900 32 H 0.224 0.776 33 H -0.224 1.224 34 H -0.189 1.189 35 H 0.170 0.830 36 H 0.263 0.737 37 H 0.246 0.754 38 H 0.241 0.759 39 H 0.120 0.880 40 H 0.078 0.922 41 H 0.247 0.753 42 H 0.124 0.876 43 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges 5.772 1.383 -1.373 6.092 hybrid contribution -0.597 1.933 0.280 2.042 sum 5.175 3.316 -1.094 6.242 Atomic orbital electron populations 1.21021 0.90388 1.03212 1.02915 1.20186 0.96752 0.92111 0.93609 1.21162 0.93704 0.97940 1.02329 1.20254 0.93643 0.95878 0.94295 1.21082 1.00452 0.93002 1.04239 1.20146 0.96382 0.93097 1.03958 1.25568 0.91639 1.13494 0.88627 1.86754 1.75471 1.41089 1.31783 0.92467 0.77532 0.78965 0.80971 1.21183 0.92201 0.98152 0.96362 1.19564 0.93630 0.92388 1.10093 1.18514 0.86903 0.84201 0.75495 1.90808 1.15037 1.87300 1.49380 1.45682 1.10901 1.03562 1.75370 1.21381 0.95067 0.85687 0.93739 1.20214 0.85726 0.77056 0.85085 1.43609 1.20979 1.61216 1.13567 1.90750 1.23844 1.45371 1.85275 1.23904 1.01101 0.97611 0.96417 1.23139 0.96754 0.89937 0.88005 0.89770 1.86428 1.38659 1.72176 1.40165 1.23365 0.97896 0.90758 1.02046 0.91531 0.90858 0.90404 0.83694 0.88608 0.90098 0.90513 0.89968 0.77565 1.22429 1.18883 0.82969 0.73746 0.75357 0.75917 0.88033 0.92170 0.75295 0.87553 0.84868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.46 8.74 71.24 0.62 0.16 16 2 C -0.03 -0.05 5.91 -19.61 -0.12 -0.17 16 3 C -0.13 0.17 9.31 22.23 0.21 0.38 16 4 C -0.04 0.13 5.87 -19.80 -0.12 0.02 16 5 C -0.13 1.03 8.74 71.24 0.62 1.65 16 6 C -0.14 0.44 5.26 -19.90 -0.10 0.34 16 7 C -0.09 0.35 2.09 71.24 0.15 0.50 16 8 O -0.54 1.76 12.65 -148.98 -1.89 -0.13 16 9 Si 0.80 -3.70 30.17 68.60 2.07 -1.63 16 10 C -0.06 0.24 8.14 22.53 0.18 0.42 16 11 C -0.15 -0.10 5.87 -20.09 -0.12 -0.22 16 12 C 0.56 1.54 7.36 86.79 0.64 2.18 16 13 O -0.55 -5.86 12.37 -3.88 -0.05 -5.91 16 14 N -0.70 2.59 4.78 -426.77 -2.04 0.55 16 15 C 0.13 0.00 1.05 3.38 0.00 0.00 16 16 C 0.54 2.62 6.22 87.66 0.55 3.16 16 17 N -0.83 1.97 8.79 -173.53 -1.52 0.44 16 18 O -0.57 -8.16 16.22 -3.04 -0.05 -8.21 16 19 C -0.15 -0.59 6.54 31.18 0.20 -0.38 16 20 C 0.08 0.08 4.82 31.18 0.15 0.23 16 21 H 0.08 0.27 7.65 -2.39 -0.02 0.25 16 22 O -0.57 -0.43 13.68 -148.98 -2.04 -2.46 16 23 C -0.10 0.47 7.20 31.12 0.22 0.69 16 24 H 0.07 0.38 8.14 -2.39 -0.02 0.36 16 25 H 0.07 0.03 8.04 -2.39 -0.02 0.01 16 26 H 0.08 0.64 5.84 -2.39 -0.01 0.63 16 27 H 0.15 -0.64 8.05 -2.91 -0.02 -0.67 16 28 H 0.10 -1.01 7.78 -2.39 -0.02 -1.03 16 29 H 0.08 -0.67 8.08 -2.39 -0.02 -0.69 16 30 H 0.08 -0.64 6.21 -2.39 -0.01 -0.66 16 31 H 0.08 -0.43 6.47 -2.39 -0.02 -0.44 16 32 H 0.37 -3.14 7.74 -74.06 -0.57 -3.72 16 33 H -0.30 -0.90 7.11 99.48 0.71 -0.19 16 34 H -0.26 0.48 7.11 99.48 0.71 1.19 16 35 H 0.15 -1.56 3.49 -2.91 -0.01 -1.57 16 36 H 0.42 -4.66 6.73 -92.71 -0.62 -5.29 16 37 H 0.42 -3.51 8.49 -92.71 -0.79 -4.29 16 38 H 0.41 -1.25 8.93 -92.71 -0.83 -2.08 16 39 H 0.10 0.33 8.14 -2.38 -0.02 0.31 16 40 H 0.06 0.62 7.62 -2.39 -0.02 0.60 16 41 H 0.40 -2.26 9.12 -74.06 -0.68 -2.93 16 42 H 0.11 -0.78 8.09 -2.39 -0.02 -0.80 16 43 H 0.13 -1.12 8.14 -2.39 -0.02 -1.14 16 Total: 0.00 -25.79 348.74 -4.74 -30.53 By element: Atomic # 1 Polarization: -19.82 SS G_CDS: -2.32 Total: -22.15 kcal Atomic # 6 Polarization: 5.87 SS G_CDS: 3.10 Total: 8.96 kcal Atomic # 7 Polarization: 4.56 SS G_CDS: -3.57 Total: 0.99 kcal Atomic # 8 Polarization: -12.69 SS G_CDS: -4.02 Total: -16.71 kcal Atomic # 14 Polarization: -3.70 SS G_CDS: 2.07 Total: -1.63 kcal Total: -25.79 -4.74 -30.53 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14243910_9599494.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -72.978 kcal (2) G-P(sol) polarization free energy of solvation -25.791 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.768 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.743 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -30.534 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.511 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds