Wall clock time and date at job start Sun Mar 7 2021 00:13:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45193 * 1 3 3 C 1.34229 * 117.00580 * 2 1 4 4 O 1.20833 * 119.99585 * 359.97438 * 3 2 1 5 5 C 1.50691 * 120.00466 * 179.97438 * 3 2 1 6 6 N 1.46502 * 112.84865 * 324.70350 * 5 3 2 7 7 C 1.34777 * 120.00083 * 286.24711 * 6 5 3 8 8 O 1.21278 * 119.99843 * 5.03133 * 7 6 5 9 9 C 1.50700 * 119.99609 * 185.02736 * 7 6 5 10 10 C 1.53001 * 109.47279 * 300.00192 * 9 7 6 11 11 O 1.42903 * 109.46909 * 180.02562 * 9 7 6 12 12 C 1.35903 * 116.99891 * 204.73332 * 11 9 7 13 13 C 1.38729 * 120.05430 * 354.71925 * 12 11 9 14 14 C 1.38143 * 119.94206 * 179.97438 * 13 12 11 15 15 C 1.38265 * 120.05784 * 0.02562 * 14 13 12 16 16 C 1.50705 * 119.94662 * 180.02562 * 15 14 13 17 17 O 1.42893 * 109.47272 * 64.99325 * 16 15 14 18 18 Si 1.86300 * 109.46935 * 185.00083 * 16 15 14 19 19 C 1.38264 * 120.11292 * 0.26991 * 15 14 13 20 20 C 1.38150 * 120.05266 * 359.45839 * 19 15 14 21 21 C 1.53790 * 113.61581 * 193.51169 * 5 3 2 22 22 C 1.53782 * 87.07860 * 270.79593 * 21 5 3 23 23 H 1.08999 * 113.60984 * 89.11634 * 22 21 5 24 24 O 1.42900 * 113.60968 * 220.01619 * 22 21 5 25 25 C 1.42905 * 113.99536 * 210.00528 * 24 22 21 26 26 C 1.53778 * 87.08350 * 334.56718 * 22 21 5 27 27 H 1.09000 * 109.47145 * 300.00935 * 1 2 3 28 28 H 1.09006 * 109.46680 * 60.00741 * 1 2 3 29 29 H 1.08999 * 109.47601 * 180.02562 * 1 2 3 30 30 H 0.97003 * 119.99603 * 106.24618 * 6 5 3 31 31 H 1.09002 * 109.47574 * 60.00379 * 9 7 6 32 32 H 1.09005 * 109.46946 * 299.99790 * 10 9 7 33 33 H 1.08995 * 109.47264 * 60.00202 * 10 9 7 34 34 H 1.09001 * 109.47130 * 180.02562 * 10 9 7 35 35 H 1.08002 * 120.03043 * 0.02562 * 13 12 11 36 36 H 1.08003 * 119.97236 * 180.02562 * 14 13 12 37 37 H 1.09002 * 109.46434 * 304.99320 * 16 15 14 38 38 H 0.96700 * 114.00286 * 60.00239 * 17 16 15 39 39 H 1.48492 * 110.00411 * 58.67594 * 18 16 15 40 40 H 1.48508 * 109.99641 * 179.97438 * 18 16 15 41 41 H 1.08000 * 119.97910 * 179.72986 * 19 15 14 42 42 H 1.08001 * 120.03190 * 180.27111 * 20 19 15 43 43 H 1.08998 * 113.60908 * 25.34807 * 21 5 3 44 44 H 1.08996 * 113.61242 * 156.24372 * 21 5 3 45 45 H 1.09006 * 109.47037 * 299.99425 * 25 24 22 46 46 H 1.08988 * 109.47537 * 59.99842 * 25 24 22 47 47 H 1.08997 * 109.46928 * 180.02562 * 25 24 22 48 48 H 1.09006 * 113.61097 * 270.88696 * 26 22 21 49 49 H 1.08996 * 113.61589 * 139.97859 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1917 0.2043 0.7811 7 6 4.1500 0.2396 2.1278 8 8 3.5177 1.1069 2.6923 9 6 4.8891 -0.7988 2.9319 10 6 4.3560 -2.1895 2.5819 11 8 4.6927 -0.5507 4.3255 12 6 5.6442 -1.0184 5.1755 13 6 6.6867 -1.7955 4.6918 14 6 7.6530 -2.2694 5.5579 15 6 7.5816 -1.9701 6.9059 16 6 8.6374 -2.4878 7.8484 17 8 9.8976 -1.8985 7.5221 18 14 8.1788 -2.0442 9.5987 19 6 6.5403 -1.2009 7.3915 20 6 5.5745 -0.7199 6.5286 21 6 4.1097 2.6753 0.3297 22 6 4.0439 2.9692 -1.1783 23 1 3.0859 3.3758 -1.5024 24 8 5.1594 3.7184 -1.6646 25 6 4.8545 4.5556 -2.7819 26 6 4.1763 1.4532 -1.3997 27 1 -0.3633 0.5140 0.8899 28 1 -0.3633 0.5138 -0.8901 29 1 -0.3634 -1.0276 0.0005 30 1 4.6358 -0.5299 0.3287 31 1 5.9530 -0.7485 2.7000 32 1 3.2921 -2.2398 2.8139 33 1 4.5055 -2.3790 1.5190 34 1 4.8903 -2.9405 3.1638 35 1 6.7431 -2.0292 3.6389 36 1 8.4649 -2.8741 5.1818 37 1 8.7079 -3.5715 7.7549 38 1 9.9083 -0.9335 7.5839 39 1 6.8552 -2.6246 9.9397 40 1 9.2119 -2.5498 10.5381 41 1 6.4843 -0.9721 8.4455 42 1 4.7637 -0.1155 6.9076 43 1 3.4247 3.2810 0.9230 44 1 5.1238 2.6673 0.7292 45 1 4.4943 3.9423 -3.6079 46 1 4.0841 5.2728 -2.4990 47 1 5.7527 5.0898 -3.0913 48 1 5.2088 1.1112 -1.4731 49 1 3.5451 1.0724 -2.2026 There are 68 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 68 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_10157680.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:26 Heat of formation + Delta-G solvation = -158.691552 kcal Electronic energy + Delta-G solvation = -33855.241281 eV Core-core repulsion = 29137.674941 eV Total energy + Delta-G solvation = -4717.566340 eV No. of doubly occupied orbitals = 68 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 366.165 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -42.70530 -41.66619 -40.64965 -39.96649 -39.00127 -37.84833 -37.27041 -37.08170 -34.83485 -32.94783 -32.03577 -31.36790 -29.38017 -27.91335 -27.16397 -26.78516 -26.29451 -25.18346 -24.14176 -23.26517 -22.43395 -21.43124 -20.84651 -19.64211 -19.31302 -18.63615 -18.21246 -18.05607 -17.70808 -17.37114 -17.11172 -16.93167 -16.74321 -16.38432 -16.07248 -15.95584 -15.78141 -15.60421 -15.37999 -15.10718 -14.84565 -14.73203 -14.50594 -14.34538 -14.23213 -13.77485 -13.71748 -13.63061 -13.39064 -13.34165 -13.29489 -13.09255 -12.91842 -12.59915 -12.37743 -12.18223 -12.15043 -12.06563 -12.03623 -11.98679 -11.85437 -11.68341 -10.99818 -10.63834 -10.52458 -10.39752 -10.03718 -9.22544 -4.99064 0.25154 0.32937 0.75224 1.18247 1.31939 1.34379 1.53567 1.63946 1.96809 2.33288 2.65725 2.75036 2.99950 3.10941 3.32020 3.41826 3.55789 3.58119 3.64983 3.74191 3.80508 3.86934 3.93540 3.94584 4.15435 4.18997 4.27512 4.35669 4.38916 4.45613 4.51961 4.52770 4.52978 4.57824 4.58378 4.63433 4.65054 4.68294 4.71960 4.75894 4.86825 4.99861 5.03287 5.10314 5.15975 5.19330 5.29196 5.49187 5.67450 6.12205 6.16107 6.35722 6.44010 6.79875 6.93720 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.473 3.527 4 O -0.524 6.524 5 C 0.156 3.844 6 N -0.685 5.685 7 C 0.520 3.480 8 O -0.555 6.555 9 C 0.068 3.932 10 C -0.174 4.174 11 O -0.312 6.312 12 C 0.121 3.879 13 C -0.207 4.207 14 C -0.057 4.057 15 C -0.161 4.161 16 C -0.063 4.063 17 O -0.555 6.555 18 Si 0.763 3.237 19 C -0.076 4.076 20 C -0.160 4.160 21 C -0.117 4.117 22 C 0.064 3.936 23 H 0.093 0.907 24 O -0.385 6.385 25 C 0.021 3.979 26 C -0.119 4.119 27 H 0.050 0.950 28 H 0.070 0.930 29 H 0.134 0.866 30 H 0.430 0.570 31 H 0.133 0.867 32 H 0.058 0.942 33 H 0.113 0.887 34 H 0.086 0.914 35 H 0.157 0.843 36 H 0.140 0.860 37 H 0.109 0.891 38 H 0.395 0.605 39 H -0.289 1.289 40 H -0.300 1.300 41 H 0.149 0.851 42 H 0.134 0.866 43 H 0.065 0.935 44 H 0.112 0.888 45 H 0.057 0.943 46 H 0.043 0.957 47 H 0.099 0.901 48 H 0.144 0.856 49 H 0.105 0.895 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.734 -3.468 -6.245 7.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.315 3.685 4 O -0.411 6.411 5 C 0.066 3.934 6 N -0.343 5.343 7 C 0.306 3.694 8 O -0.431 6.431 9 C 0.009 3.991 10 C -0.231 4.231 11 O -0.226 6.226 12 C 0.076 3.924 13 C -0.225 4.225 14 C -0.075 4.075 15 C -0.162 4.162 16 C -0.173 4.173 17 O -0.363 6.363 18 Si 0.670 3.330 19 C -0.093 4.093 20 C -0.179 4.179 21 C -0.155 4.155 22 C 0.005 3.995 23 H 0.111 0.889 24 O -0.304 6.304 25 C -0.075 4.075 26 C -0.156 4.156 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.152 0.848 30 H 0.271 0.729 31 H 0.150 0.850 32 H 0.078 0.922 33 H 0.132 0.868 34 H 0.105 0.895 35 H 0.174 0.826 36 H 0.158 0.842 37 H 0.126 0.874 38 H 0.245 0.755 39 H -0.216 1.216 40 H -0.228 1.228 41 H 0.166 0.834 42 H 0.152 0.848 43 H 0.083 0.917 44 H 0.130 0.870 45 H 0.075 0.925 46 H 0.062 0.938 47 H 0.118 0.882 48 H 0.162 0.838 49 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 2.014 -3.371 -5.017 6.371 hybrid contribution -0.758 -0.448 -0.472 0.999 sum 1.256 -3.820 -5.489 6.804 Atomic orbital electron populations 1.23579 0.74713 1.05906 1.02392 1.86475 1.24852 1.32080 1.83165 1.23706 0.91652 0.81714 0.71463 1.90683 1.67034 1.37443 1.45989 1.20982 0.84599 0.90427 0.97343 1.45435 1.57565 1.26765 1.04507 1.20706 0.80488 0.85324 0.82857 1.90795 1.42441 1.38592 1.71301 1.22378 1.02249 0.94877 0.79584 1.22406 1.02629 0.92825 1.05268 1.86185 1.44783 1.75103 1.16501 1.19245 0.88645 0.94174 0.90384 1.21535 0.96156 1.02720 1.02075 1.21005 0.97290 0.96955 0.92233 1.20337 0.97966 1.02117 0.95782 1.24982 0.84786 1.00183 1.07375 1.86458 1.30387 1.27111 1.92377 0.93826 0.75793 0.90444 0.72902 1.20962 0.92992 0.95771 0.99574 1.20590 1.02012 1.04567 0.90730 1.23448 1.02613 0.92211 0.97219 1.23539 0.90667 0.91707 0.93620 0.88871 1.87911 1.33652 1.59316 1.49487 1.23023 1.02736 0.93789 0.87938 1.23842 1.04663 0.95786 0.91334 0.93090 0.91154 0.84777 0.72870 0.84962 0.92238 0.86841 0.89467 0.82587 0.84239 0.87397 0.75536 1.21593 1.22790 0.83421 0.84829 0.91666 0.86971 0.92455 0.93817 0.88217 0.83836 0.87669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.20 16 2 O -0.35 -1.31 10.41 -51.41 -0.54 -1.84 16 3 C 0.47 3.21 6.68 71.23 0.48 3.69 16 4 O -0.52 -6.81 15.10 21.94 0.33 -6.48 16 5 C 0.16 0.13 1.12 3.38 0.00 0.13 16 6 N -0.68 2.38 5.02 -423.92 -2.13 0.26 16 7 C 0.52 1.73 6.89 87.66 0.60 2.34 16 8 O -0.56 -8.11 15.53 16.01 0.25 -7.86 16 9 C 0.07 -0.12 2.66 29.85 0.08 -0.05 16 10 C -0.17 1.18 9.06 71.98 0.65 1.83 16 11 O -0.31 -1.87 9.33 -73.42 -0.69 -2.55 16 12 C 0.12 0.39 6.60 22.51 0.15 0.54 16 13 C -0.21 0.29 8.23 22.36 0.18 0.48 16 14 C -0.06 0.05 9.68 22.25 0.22 0.26 16 15 C -0.16 0.04 5.35 -19.85 -0.11 -0.07 16 16 C -0.06 0.06 2.80 71.24 0.20 0.26 16 17 O -0.56 0.22 12.83 -148.98 -1.91 -1.69 16 18 Si 0.76 -1.15 29.80 68.60 2.04 0.89 16 19 C -0.08 0.00 8.66 22.25 0.19 0.19 16 20 C -0.16 -0.51 9.99 22.37 0.22 -0.29 16 21 C -0.12 -0.52 5.92 31.12 0.18 -0.34 16 22 C 0.06 0.07 3.92 31.12 0.12 0.19 16 23 H 0.09 0.24 7.33 -2.39 -0.02 0.22 16 24 O -0.39 -0.85 10.71 -148.98 -1.60 -2.45 16 25 C 0.02 -0.05 10.85 113.37 1.23 1.18 16 26 C -0.12 0.62 7.24 31.12 0.23 0.84 16 27 H 0.05 0.17 8.13 -2.39 -0.02 0.15 16 28 H 0.07 -0.05 8.13 -2.38 -0.02 -0.07 16 29 H 0.13 -0.83 8.14 -2.39 -0.02 -0.85 16 30 H 0.43 -5.26 8.03 -92.71 -0.74 -6.00 16 31 H 0.13 -1.06 6.32 -2.39 -0.02 -1.07 16 32 H 0.06 -0.13 8.14 -2.38 -0.02 -0.15 16 33 H 0.11 -1.54 7.46 -2.39 -0.02 -1.55 16 34 H 0.09 -0.67 6.90 -2.39 -0.02 -0.68 16 35 H 0.16 -1.16 5.43 -2.91 -0.02 -1.17 16 36 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 37 H 0.11 -0.03 7.96 -2.39 -0.02 -0.04 16 38 H 0.39 -3.15 8.70 -74.06 -0.64 -3.79 16 39 H -0.29 -1.07 7.11 99.48 0.71 -0.37 16 40 H -0.30 -1.80 7.11 99.48 0.71 -1.10 16 41 H 0.15 -0.61 4.90 -2.91 -0.01 -0.62 16 42 H 0.13 0.39 8.06 -2.91 -0.02 0.37 16 43 H 0.06 0.71 7.65 -2.39 -0.02 0.70 16 44 H 0.11 0.39 8.14 -2.39 -0.02 0.37 16 45 H 0.06 -0.28 8.14 -2.38 -0.02 -0.30 16 46 H 0.04 -0.08 8.14 -2.39 -0.02 -0.10 16 47 H 0.10 -0.45 8.14 -2.39 -0.02 -0.47 16 48 H 0.14 -1.41 8.14 -2.38 -0.02 -1.43 16 49 H 0.10 -0.83 8.10 -2.39 -0.02 -0.85 16 Total: 0.00 -29.89 407.29 1.25 -28.64 By element: Atomic # 1 Polarization: -18.95 SS G_CDS: -0.35 Total: -19.30 kcal Atomic # 6 Polarization: 6.55 SS G_CDS: 5.83 Total: 12.38 kcal Atomic # 7 Polarization: 2.38 SS G_CDS: -2.13 Total: 0.26 kcal Atomic # 8 Polarization: -18.73 SS G_CDS: -4.15 Total: -22.87 kcal Atomic # 14 Polarization: -1.15 SS G_CDS: 2.04 Total: 0.89 kcal Total: -29.89 1.25 -28.64 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_10157680.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -130.053 kcal (2) G-P(sol) polarization free energy of solvation -29.888 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -159.941 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -158.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds