Wall clock time and date at job start Sun Mar 7 2021 00:13:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34224 * 117.00222 * 2 1 4 4 O 1.20835 * 120.00118 * 0.02562 * 3 2 1 5 5 C 1.50696 * 120.00263 * 179.97438 * 3 2 1 6 6 N 1.46500 * 112.84816 * 35.51402 * 5 3 2 7 7 C 1.34775 * 120.00241 * 66.99033 * 6 5 3 8 8 O 1.21697 * 119.99354 * 354.95269 * 7 6 5 9 9 C 1.46678 * 120.00303 * 174.94843 * 7 6 5 10 10 C 1.37869 * 126.23239 * 179.97438 * 9 7 6 11 11 C 1.39838 * 107.08050 * 179.72810 * 10 9 7 12 12 C 1.50709 * 126.06591 * 180.25764 * 11 10 9 13 13 O 1.42902 * 109.46719 * 65.20731 * 12 11 10 14 14 Si 1.86299 * 109.47036 * 185.20918 * 12 11 10 15 15 C 1.35451 * 107.86687 * 0.41496 * 11 10 9 16 16 N 1.35527 * 108.86985 * 359.58153 * 15 11 10 17 17 C 1.53784 * 113.69511 * 264.24475 * 5 3 2 18 18 C 1.53777 * 87.08330 * 220.00593 * 17 5 3 19 19 H 1.09005 * 113.68756 * 139.99132 * 18 17 5 20 20 O 1.42900 * 113.61575 * 270.87989 * 18 17 5 21 21 C 1.42895 * 114.00362 * 247.50050 * 20 18 17 22 22 C 1.53780 * 113.61735 * 166.70822 * 5 3 2 23 23 H 1.08999 * 109.47329 * 179.97438 * 1 2 3 24 24 H 1.09004 * 109.46905 * 299.99950 * 1 2 3 25 25 H 1.09004 * 109.47041 * 59.99325 * 1 2 3 26 26 H 0.97007 * 119.99742 * 246.99190 * 6 5 3 27 27 H 1.07998 * 126.46179 * 359.97438 * 10 9 7 28 28 H 1.09000 * 109.47159 * 305.21344 * 12 11 10 29 29 H 0.96701 * 113.99899 * 60.00648 * 13 12 11 30 30 H 1.48498 * 109.99676 * 180.02562 * 14 12 11 31 31 H 1.48504 * 109.99879 * 301.32092 * 14 12 11 32 32 H 1.08003 * 125.56091 * 179.84004 * 15 11 10 33 33 H 0.97006 * 125.67458 * 180.30188 * 16 15 11 34 34 H 1.09002 * 113.60889 * 334.55906 * 17 5 3 35 35 H 1.09001 * 113.61408 * 105.45408 * 17 5 3 36 36 H 1.08995 * 109.47145 * 59.99709 * 21 20 18 37 37 H 1.09001 * 109.47271 * 180.02562 * 21 20 18 38 38 H 1.09003 * 109.47106 * 300.00270 * 21 20 18 39 39 H 1.08996 * 113.61586 * 254.61830 * 22 5 3 40 40 H 1.08997 * 113.61393 * 25.51876 * 22 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1922 0.2070 -0.7832 7 6 4.0356 0.1728 -2.1214 8 8 3.3004 0.9736 -2.6685 9 6 4.7512 -0.8293 -2.9182 10 6 4.6858 -0.9803 -4.2871 11 6 5.5261 -2.0462 -4.6234 12 6 5.7781 -2.5733 -6.0126 13 8 6.4425 -1.5736 -6.7880 14 14 6.8472 -4.0958 -5.9148 15 6 6.0706 -2.5233 -3.4786 16 7 5.6106 -1.7902 -2.4356 17 6 4.1755 1.4485 1.4019 18 6 5.1715 2.4295 0.7614 19 1 5.3799 3.3055 1.3758 20 8 6.3574 1.8019 0.2697 21 6 7.5414 2.1518 0.9890 22 6 4.1099 2.6764 -0.3234 23 1 -0.3634 -1.0276 -0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5140 -0.8900 26 1 4.7194 -0.4754 -0.3390 27 1 4.0995 -0.3847 -4.9712 28 1 4.8279 -2.8260 -6.4832 29 1 7.2970 -1.2996 -6.4274 30 1 7.1035 -4.6249 -7.2784 31 1 8.1330 -3.7714 -5.2463 32 1 6.7621 -3.3500 -3.4088 33 1 5.8480 -1.9205 -1.5041 34 1 3.4993 1.9172 2.1169 35 1 4.6426 0.5433 1.7902 36 1 7.4320 1.8592 2.0332 37 1 8.3969 1.6350 0.5542 38 1 7.6986 3.2288 0.9282 39 1 4.5240 2.7626 -1.3280 40 1 3.4159 3.4808 -0.0801 There are 57 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 57 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_10543058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:30 Heat of formation + Delta-G solvation = -107.885067 kcal Electronic energy + Delta-G solvation = -26868.918661 eV Core-core repulsion = 22846.113115 eV Total energy + Delta-G solvation = -4022.805546 eV No. of doubly occupied orbitals = 57 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 311.129 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -42.75467 -42.16909 -40.62173 -39.62925 -37.79791 -37.76859 -37.06788 -34.43037 -32.48963 -30.77803 -29.40745 -27.80210 -27.15415 -26.87636 -26.13246 -24.26429 -22.71271 -21.32340 -20.92144 -20.55211 -20.02687 -19.25709 -18.27684 -17.77423 -17.44963 -17.29820 -17.04673 -16.89387 -16.37637 -16.07348 -15.98713 -15.72349 -15.49501 -14.97513 -14.88917 -14.50094 -14.45360 -14.40506 -13.85762 -13.77299 -13.52023 -13.47857 -13.37325 -13.05040 -12.58987 -12.43824 -12.21588 -12.10784 -11.93599 -11.80683 -11.70072 -11.35407 -10.67827 -10.47204 -10.41863 -9.96557 -9.30836 -4.81693 0.32122 0.86293 1.40675 1.50394 1.60940 1.69433 1.74059 2.08168 2.12492 2.22232 2.55757 3.09182 3.18108 3.44977 3.54731 3.59650 3.80711 3.99110 4.14533 4.17344 4.18502 4.19899 4.35703 4.39991 4.48661 4.50924 4.58084 4.58665 4.66106 4.71971 4.74081 4.79176 4.89447 4.91094 5.02168 5.12227 5.20150 5.57400 5.71741 6.17687 6.25814 6.49003 6.51630 6.64189 6.94912 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.357 6.357 3 C 0.467 3.533 4 O -0.529 6.529 5 C 0.155 3.845 6 N -0.677 5.677 7 C 0.595 3.405 8 O -0.570 6.570 9 C -0.065 4.065 10 C -0.102 4.102 11 C -0.224 4.224 12 C -0.063 4.063 13 O -0.558 6.558 14 Si 0.791 3.209 15 C 0.065 3.935 16 N -0.512 5.512 17 C -0.125 4.125 18 C 0.077 3.923 19 H 0.112 0.888 20 O -0.380 6.380 21 C 0.024 3.976 22 C -0.133 4.133 23 H 0.131 0.869 24 H 0.070 0.930 25 H 0.048 0.952 26 H 0.420 0.580 27 H 0.121 0.879 28 H 0.107 0.893 29 H 0.384 0.616 30 H -0.314 1.314 31 H -0.265 1.265 32 H 0.216 0.784 33 H 0.437 0.563 34 H 0.125 0.875 35 H 0.121 0.879 36 H 0.061 0.939 37 H 0.094 0.906 38 H 0.045 0.955 39 H 0.067 0.933 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.798 -6.670 9.424 12.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.309 3.691 4 O -0.417 6.417 5 C 0.066 3.934 6 N -0.330 5.330 7 C 0.385 3.615 8 O -0.449 6.449 9 C -0.178 4.178 10 C -0.130 4.130 11 C -0.230 4.230 12 C -0.171 4.171 13 O -0.366 6.366 14 Si 0.694 3.306 15 C -0.074 4.074 16 N -0.109 5.109 17 C -0.163 4.163 18 C 0.019 3.981 19 H 0.129 0.871 20 O -0.298 6.298 21 C -0.072 4.072 22 C -0.171 4.171 23 H 0.149 0.851 24 H 0.089 0.911 25 H 0.067 0.933 26 H 0.259 0.741 27 H 0.139 0.861 28 H 0.125 0.875 29 H 0.233 0.767 30 H -0.243 1.243 31 H -0.191 1.191 32 H 0.232 0.768 33 H 0.279 0.721 34 H 0.144 0.856 35 H 0.140 0.860 36 H 0.080 0.920 37 H 0.113 0.887 38 H 0.064 0.936 39 H 0.086 0.914 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.275 -6.330 8.527 11.857 hybrid contribution 0.129 1.394 -0.061 1.401 sum 5.403 -4.936 8.466 11.191 Atomic orbital electron populations 1.23532 0.75096 1.05682 1.02261 1.86499 1.24720 1.32831 1.83240 1.24299 0.92361 0.81455 0.70996 1.90654 1.67169 1.37413 1.46512 1.21297 0.83271 0.91109 0.97764 1.45068 1.53402 1.29164 1.05397 1.17307 0.79946 0.82580 0.81702 1.90877 1.39624 1.42205 1.72222 1.19895 1.05168 0.99053 0.93676 1.21202 1.00276 0.98862 0.92620 1.19860 1.05327 1.01787 0.96005 1.24798 1.04041 0.99876 0.88359 1.86572 1.38066 1.58910 1.53096 0.94238 0.78231 0.77757 0.80329 1.22394 1.01111 0.98636 0.85255 1.41838 1.34156 1.24297 1.10577 1.23836 0.97913 1.03160 0.91371 1.22948 0.84905 0.96008 0.94253 0.87072 1.87882 1.15449 1.69137 1.57379 1.23021 0.86467 1.00588 0.97113 1.23607 0.97867 0.94414 1.01227 0.85054 0.91138 0.93289 0.74137 0.86069 0.87540 0.76693 1.24256 1.19083 0.76753 0.72113 0.85641 0.86048 0.92037 0.88726 0.93625 0.91406 0.86854 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.08 10.56 113.37 1.20 1.28 16 2 O -0.36 -2.54 10.41 -51.36 -0.53 -3.07 16 3 C 0.47 4.33 6.42 71.23 0.46 4.79 16 4 O -0.53 -8.00 15.66 21.94 0.34 -7.66 16 5 C 0.15 0.43 1.00 3.38 0.00 0.44 16 6 N -0.68 -0.51 4.52 -427.84 -1.93 -2.45 16 7 C 0.59 4.91 7.27 86.45 0.63 5.54 16 8 O -0.57 -10.42 15.60 -4.34 -0.07 -10.49 16 9 C -0.06 -0.27 7.05 40.35 0.28 0.02 16 10 C -0.10 -0.77 10.59 22.57 0.24 -0.53 16 11 C -0.22 -0.21 5.43 -20.12 -0.11 -0.32 16 12 C -0.06 -0.06 3.02 71.24 0.22 0.15 16 13 O -0.56 -3.17 12.88 -148.98 -1.92 -5.09 16 14 Si 0.79 -3.42 30.60 68.60 2.10 -1.32 16 15 C 0.06 -0.39 10.45 83.48 0.87 0.48 16 16 N -0.51 2.93 5.99 -183.63 -1.10 1.83 16 17 C -0.13 0.72 7.20 31.12 0.22 0.94 16 18 C 0.08 -0.28 4.37 31.12 0.14 -0.14 16 19 H 0.11 -0.82 7.87 -2.38 -0.02 -0.84 16 20 O -0.38 1.04 10.13 -148.98 -1.51 -0.47 16 21 C 0.02 -0.18 10.85 113.37 1.23 1.05 16 22 C -0.13 -0.56 6.67 31.12 0.21 -0.35 16 23 H 0.13 -0.46 8.14 -2.39 -0.02 -0.48 16 24 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 25 H 0.05 0.30 8.13 -2.38 -0.02 0.28 16 26 H 0.42 -2.89 7.81 -92.70 -0.72 -3.61 16 27 H 0.12 1.48 8.06 -2.91 -0.02 1.46 16 28 H 0.11 0.18 7.96 -2.39 -0.02 0.16 16 29 H 0.38 -0.31 8.70 -74.06 -0.64 -0.95 16 30 H -0.31 -1.60 7.11 99.48 0.71 -0.89 16 31 H -0.27 0.89 7.11 99.48 0.71 1.59 16 32 H 0.22 -3.05 6.21 -2.91 -0.02 -3.06 16 33 H 0.44 -5.83 8.20 -92.70 -0.76 -6.59 16 34 H 0.13 -0.93 8.10 -2.39 -0.02 -0.94 16 35 H 0.12 -1.29 8.09 -2.39 -0.02 -1.31 16 36 H 0.06 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H 0.09 -0.83 8.14 -2.39 -0.02 -0.84 16 38 H 0.05 -0.33 8.14 -2.39 -0.02 -0.34 16 39 H 0.07 0.67 7.41 -2.39 -0.02 0.65 16 40 H 0.11 0.59 7.35 -2.39 -0.02 0.58 16 Total: 0.00 -31.09 345.49 -0.02 -31.11 By element: Atomic # 1 Polarization: -14.74 SS G_CDS: -0.98 Total: -15.72 kcal Atomic # 6 Polarization: 7.75 SS G_CDS: 5.58 Total: 13.34 kcal Atomic # 7 Polarization: 2.42 SS G_CDS: -3.04 Total: -0.62 kcal Atomic # 8 Polarization: -23.09 SS G_CDS: -3.69 Total: -26.78 kcal Atomic # 14 Polarization: -3.42 SS G_CDS: 2.10 Total: -1.32 kcal Total: -31.09 -0.02 -31.11 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_10543058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.777 kcal (2) G-P(sol) polarization free energy of solvation -31.085 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.862 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -31.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds