Wall clock time and date at job start Sun Mar 7 2021 00:13:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34226 * 116.99753 * 2 1 4 4 O 1.20824 * 120.00271 * 359.97438 * 3 2 1 5 5 C 1.50706 * 119.99676 * 179.97438 * 3 2 1 6 6 N 1.46498 * 112.85238 * 334.66404 * 5 3 2 7 7 C 1.34784 * 119.99566 * 50.33568 * 6 5 3 8 8 O 1.21694 * 119.99995 * 358.25260 * 7 6 5 9 9 C 1.46678 * 119.99548 * 178.25348 * 7 6 5 10 10 C 1.37874 * 126.23729 * 354.65598 * 9 7 6 11 11 C 1.39827 * 107.08774 * 180.02562 * 10 9 7 12 12 C 1.50703 * 126.06958 * 179.97438 * 11 10 9 13 13 O 1.42907 * 109.46870 * 65.00003 * 12 11 10 14 14 Si 1.86298 * 109.47091 * 184.99942 * 12 11 10 15 15 C 1.35452 * 107.86668 * 0.02562 * 11 10 9 16 16 N 1.35543 * 108.87123 * 359.73089 * 15 11 10 17 17 C 1.46492 * 125.68223 * 180.30604 * 16 15 11 18 18 C 1.53785 * 113.61252 * 203.47014 * 5 3 2 19 19 C 1.53785 * 87.08158 * 270.88512 * 18 5 3 20 20 H 1.08996 * 113.61271 * 89.11310 * 19 18 5 21 21 O 1.42893 * 113.61547 * 219.93370 * 19 18 5 22 22 C 1.42902 * 114.00431 * 210.00020 * 21 19 18 23 23 C 1.53779 * 113.61284 * 105.86591 * 5 3 2 24 24 H 1.09005 * 109.46943 * 60.00606 * 1 2 3 25 25 H 1.08993 * 109.47534 * 299.99719 * 1 2 3 26 26 H 1.09001 * 109.47032 * 179.97438 * 1 2 3 27 27 H 0.96995 * 120.00135 * 230.33373 * 6 5 3 28 28 H 1.08003 * 126.45408 * 359.96831 * 10 9 7 29 29 H 1.08990 * 109.47058 * 305.00208 * 12 11 10 30 30 H 0.96692 * 113.99623 * 179.97438 * 13 12 11 31 31 H 1.48499 * 110.00330 * 300.00069 * 14 12 11 32 32 H 1.48499 * 110.00296 * 61.32193 * 14 12 11 33 33 H 1.07996 * 125.56947 * 180.02562 * 15 11 10 34 34 H 1.08999 * 109.47281 * 264.70685 * 17 16 15 35 35 H 1.09006 * 109.46934 * 24.69869 * 17 16 15 36 36 H 1.09001 * 109.47613 * 144.69974 * 17 16 15 37 37 H 1.08997 * 113.61391 * 25.43348 * 18 5 3 38 38 H 1.08997 * 113.61295 * 156.33713 * 18 5 3 39 39 H 1.08993 * 109.46794 * 59.99877 * 22 21 19 40 40 H 1.09000 * 109.47203 * 180.02562 * 22 21 19 41 41 H 1.09005 * 109.46383 * 300.00060 * 22 21 19 42 42 H 1.09004 * 113.61449 * 203.66470 * 23 5 3 43 43 H 1.09001 * 113.61293 * 334.56274 * 23 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1981 0.0863 0.5788 7 6 3.8371 -1.1417 0.1563 8 8 2.9639 -1.2643 -0.6825 9 6 4.4967 -2.3302 0.7075 10 6 5.5643 -2.3389 1.5798 11 6 5.8695 -3.6779 1.8423 12 6 6.9687 -4.1771 2.7445 13 8 6.6926 -3.7882 4.0916 14 14 7.0613 -6.0349 2.6411 15 6 5.0027 -4.4469 1.1409 16 7 4.1596 -3.6400 0.4516 17 6 3.0723 -4.0873 -0.4224 18 6 4.1136 2.5979 0.5617 19 6 4.0321 3.1486 -0.8718 20 1 3.0710 3.6037 -1.1107 21 8 5.1417 3.9739 -1.2319 22 6 4.8247 4.9912 -2.1842 23 6 4.1618 1.6915 -1.3546 24 1 -0.3633 0.5138 -0.8901 25 1 -0.3634 0.5137 0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 4.8761 0.1830 1.2656 28 1 6.0703 -1.4743 1.9835 29 1 7.9198 -3.7478 2.4300 30 1 7.3601 -4.0768 4.7288 31 1 5.7703 -6.6324 3.0673 32 1 7.3793 -6.4511 1.2515 33 1 4.9830 -5.5267 1.1359 34 1 3.4236 -4.1161 -1.4538 35 1 2.7501 -5.0839 -0.1204 36 1 2.2341 -3.3950 -0.3432 37 1 3.4351 3.0908 1.2580 38 1 5.1318 2.5224 0.9432 39 1 4.0564 5.6463 -1.7737 40 1 5.7192 5.5734 -2.4052 41 1 4.4567 4.5291 -3.1003 42 1 5.1933 1.3686 -1.4961 43 1 3.5222 1.4530 -2.2044 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_10803934.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:33 Heat of formation + Delta-G solvation = -91.296374 kcal Electronic energy + Delta-G solvation = -29004.433853 eV Core-core repulsion = 24826.810027 eV Total energy + Delta-G solvation = -4177.623826 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.82750 -42.34457 -40.33585 -39.70520 -37.82930 -37.58842 -37.04963 -34.74205 -33.80871 -31.09043 -29.25109 -28.42116 -27.86611 -27.21218 -26.19507 -25.57695 -24.14450 -22.88987 -21.17339 -20.87924 -20.48144 -19.21035 -18.68643 -18.19967 -18.08526 -17.72216 -17.45255 -17.05090 -16.92530 -16.64617 -16.12958 -15.86240 -15.42700 -15.21382 -15.15656 -14.96377 -14.80807 -14.52716 -14.39100 -14.13797 -13.77583 -13.68337 -13.62462 -13.36245 -13.27518 -13.18486 -13.11054 -12.56164 -12.42942 -12.28450 -12.20478 -11.93841 -11.87986 -11.69765 -11.03059 -10.64123 -10.39126 -10.17496 -9.75146 -9.38210 -4.89576 0.31473 0.79868 1.34180 1.40697 1.46977 1.53478 1.74895 2.05275 2.08262 2.23770 2.78640 2.91998 3.16379 3.42363 3.53967 3.60395 3.67486 3.75086 3.95659 3.97108 4.07544 4.13095 4.19317 4.25251 4.35955 4.39375 4.43243 4.50360 4.51746 4.55209 4.59108 4.62661 4.64169 4.69698 4.74479 4.75941 4.85126 5.09120 5.11321 5.23349 5.55372 5.80231 6.00140 6.11490 6.31875 6.50514 7.04653 7.06479 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.320 6.320 3 C 0.472 3.528 4 O -0.525 6.525 5 C 0.157 3.843 6 N -0.692 5.692 7 C 0.586 3.414 8 O -0.527 6.527 9 C -0.065 4.065 10 C -0.111 4.111 11 C -0.181 4.181 12 C -0.041 4.041 13 O -0.567 6.567 14 Si 0.772 3.228 15 C 0.007 3.993 16 N -0.411 5.411 17 C 0.068 3.932 18 C -0.106 4.106 19 C 0.067 3.933 20 H 0.095 0.905 21 O -0.383 6.383 22 C 0.022 3.978 23 C -0.139 4.139 24 H 0.060 0.940 25 H 0.061 0.939 26 H 0.116 0.884 27 H 0.424 0.576 28 H 0.169 0.831 29 H 0.090 0.910 30 H 0.400 0.600 31 H -0.298 1.298 32 H -0.291 1.291 33 H 0.172 0.828 34 H 0.082 0.918 35 H 0.103 0.897 36 H 0.091 0.909 37 H 0.095 0.905 38 H 0.139 0.861 39 H 0.049 0.951 40 H 0.101 0.899 41 H 0.046 0.954 42 H 0.121 0.879 43 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.037 -1.955 2.239 5.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.234 6.234 3 C 0.314 3.686 4 O -0.415 6.415 5 C 0.068 3.932 6 N -0.347 5.347 7 C 0.375 3.625 8 O -0.405 6.405 9 C -0.178 4.178 10 C -0.137 4.137 11 C -0.187 4.187 12 C -0.152 4.152 13 O -0.376 6.376 14 Si 0.679 3.321 15 C -0.130 4.130 16 N -0.083 5.083 17 C -0.073 4.073 18 C -0.144 4.144 19 C 0.008 3.992 20 H 0.113 0.887 21 O -0.302 6.302 22 C -0.074 4.074 23 C -0.178 4.178 24 H 0.078 0.922 25 H 0.080 0.920 26 H 0.134 0.866 27 H 0.264 0.736 28 H 0.186 0.814 29 H 0.107 0.893 30 H 0.251 0.749 31 H -0.226 1.226 32 H -0.218 1.218 33 H 0.189 0.811 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.157 0.843 39 H 0.068 0.932 40 H 0.119 0.881 41 H 0.065 0.935 42 H 0.140 0.860 43 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 3.188 -2.348 0.816 4.043 hybrid contribution -0.803 0.400 -0.333 0.957 sum 2.385 -1.948 0.483 3.117 Atomic orbital electron populations 1.23475 0.76639 1.04833 1.02191 1.87057 1.23327 1.30991 1.82051 1.23559 0.91332 0.81988 0.71705 1.90667 1.66835 1.37114 1.46871 1.21006 0.85275 0.87378 0.99526 1.45307 1.43316 1.02800 1.43311 1.17033 0.81413 0.82565 0.81534 1.90844 1.30677 1.86180 1.32776 1.20078 1.03944 0.84599 1.09217 1.21503 0.96581 0.97848 0.97785 1.19151 1.01696 0.93765 1.04095 1.24093 0.96636 1.11232 0.83194 1.86452 1.53284 1.81521 1.16347 0.94308 0.82982 0.73414 0.81436 1.21955 0.94385 0.96730 0.99898 1.43946 1.24962 1.04713 1.34717 1.22357 0.88547 1.02474 0.93885 1.23531 1.04454 0.89066 0.97316 1.23542 0.90762 0.89618 0.95243 0.88711 1.87889 1.33788 1.46324 1.62156 1.23008 1.02816 0.90222 0.91390 1.23970 1.03227 0.96091 0.94510 0.92154 0.91980 0.86554 0.73618 0.81363 0.89260 0.74914 1.22591 1.21821 0.81128 0.89918 0.87800 0.89059 0.88650 0.84325 0.93183 0.88051 0.93544 0.86035 0.91108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.10 10.56 113.37 1.20 1.30 16 2 O -0.32 -3.07 6.23 -43.36 -0.27 -3.34 16 3 C 0.47 4.11 6.98 71.24 0.50 4.61 16 4 O -0.53 -6.27 14.98 21.97 0.33 -5.94 16 5 C 0.16 0.44 1.23 3.39 0.00 0.45 16 6 N -0.69 -0.66 5.30 -427.82 -2.27 -2.93 16 7 C 0.59 3.68 7.17 86.45 0.62 4.30 16 8 O -0.53 -5.76 11.29 19.90 0.22 -5.53 16 9 C -0.07 -0.38 6.88 40.35 0.28 -0.10 16 10 C -0.11 -0.37 10.29 22.57 0.23 -0.14 16 11 C -0.18 -0.77 5.46 -20.12 -0.11 -0.88 16 12 C -0.04 0.05 3.01 71.24 0.21 0.27 16 13 O -0.57 0.53 12.86 -148.98 -1.92 -1.38 16 14 Si 0.77 -2.37 30.60 68.60 2.10 -0.27 16 15 C 0.01 0.03 9.93 83.48 0.83 0.86 16 16 N -0.41 -2.30 3.16 -534.32 -1.69 -3.99 16 17 C 0.07 0.10 10.36 127.77 1.32 1.43 16 18 C -0.11 0.10 6.95 31.12 0.22 0.31 16 19 C 0.07 0.14 3.90 31.21 0.12 0.26 16 20 H 0.10 0.37 7.05 -2.39 -0.02 0.35 16 21 O -0.38 -1.12 10.72 -148.98 -1.60 -2.72 16 22 C 0.02 -0.02 10.85 113.37 1.23 1.21 16 23 C -0.14 -0.33 7.30 31.21 0.23 -0.10 16 24 H 0.06 0.29 8.13 -2.38 -0.02 0.27 16 25 H 0.06 0.25 8.13 -2.39 -0.02 0.23 16 26 H 0.12 0.05 8.14 -2.39 -0.02 0.04 16 27 H 0.42 -2.02 7.56 -92.71 -0.70 -2.72 16 28 H 0.17 -0.39 7.47 -2.91 -0.02 -0.41 16 29 H 0.09 -0.46 7.96 -2.39 -0.02 -0.48 16 30 H 0.40 -4.56 8.74 -74.06 -0.65 -5.20 16 31 H -0.30 -1.25 7.11 99.48 0.71 -0.54 16 32 H -0.29 -0.71 7.11 99.48 0.71 0.00 16 33 H 0.17 0.35 6.21 -2.91 -0.02 0.34 16 34 H 0.08 0.06 8.14 -2.39 -0.02 0.04 16 35 H 0.10 -0.33 8.12 -2.38 -0.02 -0.35 16 36 H 0.09 0.36 6.78 -2.39 -0.02 0.34 16 37 H 0.09 -0.02 7.85 -2.39 -0.02 -0.04 16 38 H 0.14 -0.78 8.13 -2.39 -0.02 -0.80 16 39 H 0.05 -0.09 8.14 -2.39 -0.02 -0.11 16 40 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 41 H 0.05 -0.07 8.14 -2.38 -0.02 -0.09 16 42 H 0.12 0.09 8.14 -2.39 -0.02 0.07 16 43 H 0.07 0.34 8.09 -2.39 -0.02 0.32 16 Total: 0.00 -23.00 359.31 1.54 -21.47 By element: Atomic # 1 Polarization: -8.88 SS G_CDS: -0.26 Total: -9.13 kcal Atomic # 6 Polarization: 6.90 SS G_CDS: 6.88 Total: 13.78 kcal Atomic # 7 Polarization: -2.97 SS G_CDS: -3.96 Total: -6.92 kcal Atomic # 8 Polarization: -15.69 SS G_CDS: -3.23 Total: -18.92 kcal Atomic # 14 Polarization: -2.37 SS G_CDS: 2.10 Total: -0.27 kcal Total: -23.00 1.54 -21.47 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_10803934.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -69.829 kcal (2) G-P(sol) polarization free energy of solvation -23.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.833 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.536 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -21.467 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds