Wall clock time and date at job start Sun Mar 7 2021 00:13:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45205 * 1 3 3 C 1.34230 * 117.00019 * 2 1 4 4 O 1.20832 * 119.99905 * 0.02562 * 3 2 1 5 5 C 1.50697 * 119.99896 * 179.97438 * 3 2 1 6 6 N 1.46504 * 112.90848 * 19.56700 * 5 3 2 7 7 C 1.34776 * 119.99917 * 304.08018 * 6 5 3 8 8 O 1.21699 * 119.99851 * 3.60782 * 7 6 5 9 9 C 1.46671 * 119.99965 * 183.60395 * 7 6 5 10 10 C 1.37874 * 126.23338 * 354.53109 * 9 7 6 11 11 C 1.39841 * 107.08194 * 179.84174 * 10 9 7 12 12 C 1.35446 * 107.86638 * 0.41607 * 11 10 9 13 13 C 1.50702 * 125.56354 * 179.77052 * 12 11 10 14 14 O 1.42901 * 109.47097 * 149.95904 * 13 12 11 15 15 Si 1.86299 * 109.46732 * 29.96079 * 13 12 11 16 16 N 1.35533 * 108.87212 * 359.73879 * 12 11 10 17 17 C 1.46506 * 125.67647 * 179.97438 * 16 12 11 18 18 C 1.53779 * 113.61426 * 248.31124 * 5 3 2 19 19 C 1.53779 * 87.08341 * 270.88423 * 18 5 3 20 20 H 1.09003 * 113.60895 * 89.12095 * 19 18 5 21 21 O 1.42899 * 113.61404 * 220.01518 * 19 18 5 22 22 C 1.42896 * 114.00104 * 247.49810 * 21 19 18 23 23 C 1.53777 * 87.08218 * 334.56821 * 19 18 5 24 24 H 1.09001 * 109.46745 * 299.99576 * 1 2 3 25 25 H 1.08999 * 109.47273 * 59.99935 * 1 2 3 26 26 H 1.09003 * 109.47045 * 179.97438 * 1 2 3 27 27 H 0.96989 * 119.99738 * 124.08041 * 6 5 3 28 28 H 1.07999 * 126.45333 * 359.95883 * 10 9 7 29 29 H 1.08001 * 126.06260 * 180.13006 * 11 10 9 30 30 H 1.08995 * 109.47509 * 269.96249 * 13 12 11 31 31 H 0.96707 * 114.00175 * 300.00493 * 14 13 12 32 32 H 1.48506 * 109.99761 * 179.97438 * 15 13 12 33 33 H 1.48494 * 110.00397 * 301.31609 * 15 13 12 34 34 H 1.09006 * 109.47116 * 275.99060 * 17 16 12 35 35 H 1.08989 * 109.47052 * 35.98975 * 17 16 12 36 36 H 1.09000 * 109.46738 * 155.99714 * 17 16 12 37 37 H 1.09005 * 113.61117 * 156.33554 * 18 5 3 38 38 H 1.09001 * 113.69633 * 25.44856 * 18 5 3 39 39 H 1.08999 * 109.47210 * 60.00810 * 22 21 19 40 40 H 1.09005 * 109.47284 * 180.02562 * 22 21 19 41 41 H 1.09006 * 109.47320 * 299.99984 * 22 21 19 42 42 H 1.09004 * 113.61386 * 139.97700 * 23 19 18 43 43 H 1.08998 * 113.61390 * 270.88069 * 23 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2094 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.2025 0.0348 -0.4509 7 6 3.9227 -1.1299 0.1670 8 8 3.0927 -1.1627 1.0565 9 6 4.6184 -2.3577 -0.2326 10 6 5.4977 -2.4901 -1.2862 11 6 5.9238 -3.8219 -1.3008 12 6 5.3039 -4.4677 -0.2844 13 6 5.4724 -5.9250 0.0604 14 8 5.2875 -6.1065 1.4657 15 14 7.1845 -6.4823 -0.4178 16 7 4.5079 -3.5891 0.3725 17 6 3.6690 -3.8988 1.5330 18 6 4.1537 1.8273 1.3100 19 6 4.0276 3.2264 0.6843 20 1 3.0651 3.7029 0.8710 21 8 5.1362 4.0823 0.9678 22 6 4.8146 5.1898 1.8117 23 6 4.1174 2.5355 -0.6865 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 4.8251 0.0520 -1.1944 28 1 5.8017 -1.7113 -1.9700 29 1 6.6198 -4.2591 -2.0015 30 1 4.7336 -6.5146 -0.4824 31 1 5.9121 -5.6099 2.0120 32 1 7.3636 -7.9179 -0.0824 33 1 7.4006 -6.2692 -1.8714 34 1 2.7194 -4.3136 1.1946 35 1 4.1781 -4.6257 2.1657 36 1 3.4851 -2.9874 2.1019 37 1 5.1842 1.5208 1.4898 38 1 3.5101 1.6769 2.1767 39 1 4.4400 4.8219 2.7669 40 1 5.7085 5.7908 1.9789 41 1 4.0501 5.8016 1.3327 42 1 3.4432 2.9562 -1.4326 43 1 5.1379 2.4226 -1.0525 There are 60 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 60 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_10803936.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:36 Heat of formation + Delta-G solvation = -93.611776 kcal Electronic energy + Delta-G solvation = -29110.225405 eV Core-core repulsion = 24932.501176 eV Total energy + Delta-G solvation = -4177.724229 eV No. of doubly occupied orbitals = 60 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 325.145 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -42.77290 -42.31698 -40.34896 -39.66680 -37.81701 -37.77111 -37.05799 -34.62607 -33.56679 -31.35051 -29.31193 -27.96205 -27.49609 -27.23452 -26.91428 -25.62114 -23.64796 -22.77022 -21.47172 -20.83424 -20.45395 -19.32648 -18.70208 -18.12764 -17.95986 -17.65422 -17.33783 -16.96941 -16.84576 -16.40198 -16.04008 -15.82374 -15.65436 -15.20288 -15.12630 -14.90642 -14.73924 -14.54514 -14.43721 -14.35239 -13.75058 -13.68206 -13.58178 -13.29415 -13.16623 -13.11405 -12.97284 -12.52187 -12.26327 -12.24681 -12.14072 -11.99916 -11.87303 -11.66181 -11.04230 -10.63237 -10.60645 -10.35437 -9.72112 -9.08724 -4.89094 0.40139 0.83010 1.18654 1.50050 1.52539 1.71444 1.77207 2.02261 2.25090 2.37055 2.82232 2.96721 3.19424 3.30803 3.45431 3.54018 3.58758 3.78391 4.00219 4.03042 4.12358 4.19022 4.35547 4.37331 4.42024 4.43478 4.46705 4.52298 4.54131 4.55982 4.59102 4.66606 4.71789 4.76008 4.81967 4.87292 5.08062 5.15052 5.19026 5.25227 5.73192 6.00931 6.14017 6.15707 6.41334 6.51095 6.58745 7.13539 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.334 6.334 3 C 0.475 3.525 4 O -0.526 6.526 5 C 0.159 3.841 6 N -0.691 5.691 7 C 0.590 3.410 8 O -0.545 6.545 9 C -0.073 4.073 10 C -0.127 4.127 11 C -0.213 4.213 12 C 0.013 3.987 13 C -0.057 4.057 14 O -0.553 6.553 15 Si 0.811 3.189 16 N -0.399 5.399 17 C 0.060 3.940 18 C -0.137 4.137 19 C 0.066 3.934 20 H 0.095 0.905 21 O -0.383 6.383 22 C 0.022 3.978 23 C -0.104 4.104 24 H 0.059 0.941 25 H 0.065 0.935 26 H 0.115 0.885 27 H 0.425 0.575 28 H 0.174 0.826 29 H 0.160 0.840 30 H 0.111 0.889 31 H 0.396 0.604 32 H -0.296 1.296 33 H -0.274 1.274 34 H 0.062 0.938 35 H 0.117 0.883 36 H 0.087 0.913 37 H 0.121 0.879 38 H 0.067 0.933 39 H 0.045 0.955 40 H 0.101 0.899 41 H 0.049 0.951 42 H 0.095 0.905 43 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.190 0.429 -0.887 5.282 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.248 6.248 3 C 0.317 3.683 4 O -0.415 6.415 5 C 0.069 3.931 6 N -0.347 5.347 7 C 0.379 3.621 8 O -0.424 6.424 9 C -0.186 4.186 10 C -0.153 4.153 11 C -0.236 4.236 12 C -0.105 4.105 13 C -0.165 4.165 14 O -0.361 6.361 15 Si 0.714 3.286 16 N -0.072 5.072 17 C -0.080 4.080 18 C -0.176 4.176 19 C 0.007 3.993 20 H 0.113 0.887 21 O -0.301 6.301 22 C -0.074 4.074 23 C -0.142 4.142 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.133 0.867 27 H 0.265 0.735 28 H 0.191 0.809 29 H 0.178 0.822 30 H 0.129 0.871 31 H 0.246 0.754 32 H -0.224 1.224 33 H -0.200 1.200 34 H 0.081 0.919 35 H 0.135 0.865 36 H 0.106 0.894 37 H 0.140 0.860 38 H 0.086 0.914 39 H 0.064 0.936 40 H 0.119 0.881 41 H 0.068 0.932 42 H 0.114 0.886 43 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 4.277 -0.319 -0.672 4.341 hybrid contribution -1.501 0.119 -0.196 1.519 sum 2.775 -0.200 -0.868 2.915 Atomic orbital electron populations 1.23449 0.75855 1.04848 1.02361 1.86779 1.23870 1.31903 1.82283 1.23573 0.91512 0.81687 0.71493 1.90668 1.66877 1.37018 1.46975 1.20967 0.84841 0.86272 1.00979 1.45259 1.47588 1.04395 1.37409 1.17116 0.80841 0.82638 0.81477 1.90810 1.33565 1.86213 1.31766 1.20048 1.09387 0.86987 1.02205 1.21671 0.97881 0.98165 0.97564 1.20895 1.06566 0.94611 1.01565 1.21346 0.97954 0.93520 0.97723 1.25182 1.14825 0.90835 0.85688 1.86455 1.61400 1.72923 1.15361 0.92961 0.76759 0.78312 0.80594 1.43872 1.32378 1.06852 1.24108 1.22514 0.94663 1.04128 0.86736 1.23882 1.03164 0.95496 0.95015 1.23525 0.90797 0.89403 0.95572 0.88707 1.87888 1.33669 1.39327 1.69258 1.23000 1.02764 0.88249 0.93403 1.23526 1.04547 0.88911 0.97176 0.92184 0.91584 0.86656 0.73541 0.80912 0.82213 0.87147 0.75359 1.22362 1.20005 0.91922 0.86454 0.89394 0.86045 0.91399 0.93605 0.88053 0.93229 0.88617 0.84117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.13 10.56 113.37 1.20 1.32 16 2 O -0.33 -3.10 6.95 -43.73 -0.30 -3.41 16 3 C 0.47 3.83 6.90 71.23 0.49 4.32 16 4 O -0.53 -5.97 14.97 21.94 0.33 -5.64 16 5 C 0.16 0.28 1.16 3.38 0.00 0.29 16 6 N -0.69 0.52 5.26 -427.83 -2.25 -1.73 16 7 C 0.59 2.87 7.02 86.45 0.61 3.48 16 8 O -0.55 -5.88 11.73 18.88 0.22 -5.66 16 9 C -0.07 -0.23 6.88 40.35 0.28 0.05 16 10 C -0.13 0.17 10.35 22.57 0.23 0.40 16 11 C -0.21 0.21 9.37 22.01 0.21 0.41 16 12 C 0.01 0.00 6.14 41.34 0.25 0.26 16 13 C -0.06 0.13 2.99 71.24 0.21 0.34 16 14 O -0.55 1.46 10.11 -148.98 -1.51 -0.04 16 15 Si 0.81 -3.92 31.29 68.60 2.15 -1.77 16 16 N -0.40 -1.25 3.16 -519.71 -1.64 -2.90 16 17 C 0.06 0.14 10.22 127.77 1.31 1.45 16 18 C -0.14 -0.26 7.19 31.12 0.22 -0.03 16 19 C 0.07 0.09 3.89 31.12 0.12 0.21 16 20 H 0.10 0.34 6.92 -2.39 -0.02 0.32 16 21 O -0.38 -0.88 10.71 -148.98 -1.60 -2.47 16 22 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 23 C -0.10 0.23 6.97 31.12 0.22 0.45 16 24 H 0.06 0.29 8.13 -2.39 -0.02 0.27 16 25 H 0.07 0.21 8.13 -2.39 -0.02 0.19 16 26 H 0.12 0.08 8.14 -2.39 -0.02 0.06 16 27 H 0.42 -3.08 7.56 -92.72 -0.70 -3.78 16 28 H 0.17 -1.38 7.45 -2.91 -0.02 -1.40 16 29 H 0.16 -0.64 6.62 -2.91 -0.02 -0.66 16 30 H 0.11 -0.09 7.96 -2.39 -0.02 -0.11 16 31 H 0.40 -3.91 8.31 -74.05 -0.62 -4.53 16 32 H -0.30 -0.68 7.11 99.48 0.71 0.02 16 33 H -0.27 0.31 6.76 99.48 0.67 0.98 16 34 H 0.06 0.25 8.14 -2.38 -0.02 0.23 16 35 H 0.12 -0.19 5.26 -2.39 -0.01 -0.20 16 36 H 0.09 0.46 6.10 -2.39 -0.01 0.45 16 37 H 0.12 0.02 8.14 -2.38 -0.02 0.00 16 38 H 0.07 0.33 8.10 -2.39 -0.02 0.32 16 39 H 0.05 -0.08 8.14 -2.39 -0.02 -0.10 16 40 H 0.10 -0.40 8.14 -2.38 -0.02 -0.42 16 41 H 0.05 -0.10 8.14 -2.38 -0.02 -0.12 16 42 H 0.10 -0.18 7.96 -2.39 -0.02 -0.20 16 43 H 0.14 -1.00 8.14 -2.39 -0.02 -1.02 16 Total: 0.00 -20.92 354.05 1.72 -19.20 By element: Atomic # 1 Polarization: -9.46 SS G_CDS: -0.25 Total: -9.71 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: 6.58 Total: 14.14 kcal Atomic # 7 Polarization: -0.73 SS G_CDS: -3.89 Total: -4.63 kcal Atomic # 8 Polarization: -14.37 SS G_CDS: -2.86 Total: -17.23 kcal Atomic # 14 Polarization: -3.92 SS G_CDS: 2.15 Total: -1.77 kcal Total: -20.92 1.72 -19.20 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_10803936.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -74.413 kcal (2) G-P(sol) polarization free energy of solvation -20.920 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.721 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -19.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.612 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds