Wall clock time and date at job start Sun Mar 7 2021 00:13:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34227 * 116.99982 * 2 1 4 4 O 1.20825 * 120.00155 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00013 * 180.02562 * 3 2 1 6 6 N 1.46499 * 112.91030 * 335.17525 * 5 3 2 7 7 C 1.34775 * 119.99937 * 293.01511 * 6 5 3 8 8 O 1.21720 * 120.00092 * 4.86648 * 7 6 5 9 9 C 1.46566 * 120.00034 * 184.87390 * 7 6 5 10 10 C 1.40861 * 126.57822 * 179.97438 * 9 7 6 11 11 C 1.40089 * 132.86843 * 0.02562 * 10 9 7 12 12 C 1.36442 * 119.25452 * 179.97438 * 11 10 9 13 13 C 1.50699 * 120.29621 * 180.02562 * 12 11 10 14 14 O 1.42902 * 109.47351 * 120.02102 * 13 12 11 15 15 Si 1.86306 * 109.47252 * 240.02406 * 13 12 11 16 16 C 1.40157 * 119.41030 * 0.02562 * 12 11 10 17 17 C 1.35180 * 120.32041 * 359.95609 * 16 12 11 18 18 N 1.36241 * 120.70521 * 0.04354 * 17 16 12 19 19 N 1.40014 * 132.01316 * 180.02562 * 18 17 16 20 20 C 1.30744 * 109.60551 * 179.69643 * 19 18 17 21 21 C 1.53776 * 113.61525 * 203.92232 * 5 3 2 22 22 C 1.53774 * 87.08387 * 270.88209 * 21 5 3 23 23 H 1.09007 * 113.61509 * 89.11455 * 22 21 5 24 24 O 1.42898 * 113.61696 * 219.93049 * 22 21 5 25 25 C 1.42903 * 114.00403 * 209.99723 * 24 22 21 26 26 C 1.53774 * 87.08272 * 334.56610 * 22 21 5 27 27 H 1.09000 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.47028 * 300.00168 * 1 2 3 29 29 H 1.09002 * 109.46863 * 60.00380 * 1 2 3 30 30 H 0.97000 * 120.00042 * 113.00036 * 6 5 3 31 31 H 1.08005 * 120.36904 * 359.97438 * 11 10 9 32 32 H 1.09004 * 109.46939 * 0.02562 * 13 12 11 33 33 H 0.96700 * 113.99857 * 60.00384 * 14 13 12 34 34 H 1.48498 * 110.00237 * 179.97438 * 15 13 12 35 35 H 1.48501 * 109.99481 * 301.31671 * 15 13 12 36 36 H 1.08006 * 119.84281 * 179.97438 * 16 12 11 37 37 H 1.07999 * 119.65115 * 180.02562 * 17 16 12 38 38 H 1.07996 * 125.62892 * 180.25013 * 20 19 18 39 39 H 1.09003 * 113.61707 * 25.43414 * 21 5 3 40 40 H 1.09004 * 113.61632 * 156.24994 * 21 5 3 41 41 H 1.09000 * 109.47184 * 300.00336 * 25 24 22 42 42 H 1.09005 * 109.46593 * 60.00364 * 25 24 22 43 43 H 1.09001 * 109.46971 * 179.97438 * 25 24 22 44 44 H 1.09002 * 113.61627 * 270.88477 * 26 22 21 45 45 H 1.09001 * 113.61837 * 139.97529 * 26 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.2001 0.0815 0.5655 7 6 4.0572 -0.2002 1.8757 8 8 3.3301 0.4861 2.5700 9 6 4.7773 -1.3328 2.4646 10 6 4.7307 -1.7495 3.8093 11 6 4.0454 -1.2691 4.9327 12 6 4.2056 -1.9001 6.1318 13 6 3.4792 -1.4036 7.3553 14 8 2.6326 -2.4385 7.8594 15 14 4.7184 -0.9236 8.6611 16 6 5.0517 -3.0144 6.2155 17 6 5.7028 -3.4608 5.1182 18 7 5.5493 -2.8375 3.9165 19 7 6.0957 -3.0912 2.6526 20 6 5.6422 -2.2152 1.7946 21 6 4.1143 2.5932 0.5708 22 6 4.0311 3.1557 -0.8579 23 1 3.0697 3.6129 -1.0920 24 8 5.1403 3.9840 -1.2125 25 6 4.8222 5.0091 -2.1559 26 6 4.1601 1.7053 -1.3523 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8900 30 1 4.7225 -0.5059 -0.0027 31 1 3.3975 -0.4088 4.8506 32 1 2.8746 -0.5357 7.0916 33 1 3.1043 -3.2431 8.1147 34 1 4.0148 -0.4316 9.8727 35 1 5.5699 -2.0902 9.0063 36 1 5.1839 -3.5190 7.1612 37 1 6.3518 -4.3206 5.1949 38 1 5.8931 -2.1743 0.7450 39 1 3.4366 3.0803 1.2720 40 1 5.1325 2.5141 0.9518 41 1 4.4531 4.5548 -3.0755 42 1 4.0544 5.6609 -1.7390 43 1 5.7163 5.5937 -2.3725 44 1 5.1914 1.3838 -1.4983 45 1 3.5194 1.4755 -2.2036 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_11618758.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:39 Heat of formation + Delta-G solvation = -46.039237 kcal Electronic energy + Delta-G solvation = -33153.975592 eV Core-core repulsion = 28528.209931 eV Total energy + Delta-G solvation = -4625.765661 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 362.140 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.33129 -42.51199 -40.48783 -39.76991 -39.29970 -37.79499 -37.32014 -37.09963 -34.44300 -34.02795 -32.11531 -30.45689 -29.25346 -27.90858 -27.32144 -27.10508 -26.04867 -24.92778 -23.95257 -23.14280 -22.84479 -21.28540 -20.78934 -19.33916 -19.13245 -18.58148 -18.11472 -17.85351 -17.63174 -17.45576 -17.28979 -16.98831 -16.91790 -16.48190 -16.08013 -15.88559 -15.75273 -15.46147 -15.44788 -15.01271 -14.76259 -14.62777 -14.48252 -14.23006 -13.82887 -13.70161 -13.54471 -13.49474 -13.28656 -13.23861 -13.06711 -12.54562 -12.48218 -12.36875 -12.14977 -11.97003 -11.92317 -11.89112 -11.72661 -11.59718 -10.99968 -10.89024 -10.57340 -10.36201 -10.32198 -8.81186 -4.89346 -0.57033 -0.13695 0.86004 1.00525 1.02217 1.20749 1.50991 1.59379 1.88846 1.93431 2.07745 2.46115 2.81822 3.07984 3.09347 3.22193 3.23267 3.36440 3.48594 3.53322 3.57920 3.70684 3.86339 3.96001 4.03062 4.16383 4.19267 4.20934 4.35801 4.39923 4.44509 4.50758 4.56009 4.57593 4.57935 4.59689 4.70365 4.75061 4.79700 4.82815 4.89729 5.09913 5.14060 5.20370 5.26771 5.28645 5.65215 6.17358 6.28308 6.45959 6.47608 6.53438 7.20876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.354 6.354 3 C 0.479 3.521 4 O -0.526 6.526 5 C 0.158 3.842 6 N -0.692 5.692 7 C 0.606 3.394 8 O -0.579 6.579 9 C -0.337 4.337 10 C 0.155 3.845 11 C -0.117 4.117 12 C -0.050 4.050 13 C -0.085 4.085 14 O -0.542 6.542 15 Si 0.768 3.232 16 C -0.157 4.157 17 C 0.119 3.881 18 N -0.274 5.274 19 N -0.338 5.338 20 C 0.135 3.865 21 C -0.114 4.114 22 C 0.065 3.935 23 H 0.095 0.905 24 O -0.385 6.385 25 C 0.022 3.978 26 C -0.121 4.121 27 H 0.127 0.873 28 H 0.052 0.948 29 H 0.071 0.929 30 H 0.423 0.577 31 H 0.149 0.851 32 H 0.121 0.879 33 H 0.391 0.609 34 H -0.294 1.294 35 H -0.251 1.251 36 H 0.190 0.810 37 H 0.206 0.794 38 H 0.237 0.763 39 H 0.066 0.934 40 H 0.114 0.886 41 H 0.055 0.945 42 H 0.044 0.956 43 H 0.099 0.901 44 H 0.142 0.858 45 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.846 -3.393 -1.832 6.193 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.269 6.269 3 C 0.321 3.679 4 O -0.414 6.414 5 C 0.069 3.931 6 N -0.347 5.347 7 C 0.397 3.603 8 O -0.460 6.460 9 C -0.352 4.352 10 C 0.034 3.966 11 C -0.137 4.137 12 C -0.056 4.056 13 C -0.192 4.192 14 O -0.350 6.350 15 Si 0.668 3.332 16 C -0.178 4.178 17 C -0.006 4.006 18 N -0.037 5.037 19 N -0.158 5.158 20 C -0.046 4.046 21 C -0.153 4.153 22 C 0.006 3.994 23 H 0.113 0.887 24 O -0.304 6.304 25 C -0.074 4.074 26 C -0.159 4.159 27 H 0.145 0.855 28 H 0.071 0.929 29 H 0.090 0.910 30 H 0.263 0.737 31 H 0.167 0.833 32 H 0.139 0.861 33 H 0.241 0.759 34 H -0.221 1.221 35 H -0.176 1.176 36 H 0.207 0.793 37 H 0.223 0.777 38 H 0.253 0.747 39 H 0.085 0.915 40 H 0.132 0.868 41 H 0.073 0.927 42 H 0.062 0.938 43 H 0.118 0.882 44 H 0.160 0.840 45 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 4.952 -3.435 -0.584 6.055 hybrid contribution -1.672 -0.351 -0.337 1.741 sum 3.280 -3.786 -0.921 5.094 Atomic orbital electron populations 1.23525 0.74932 1.05532 1.02440 1.86495 1.24729 1.32573 1.83128 1.23660 0.91647 0.81513 0.71096 1.90656 1.66995 1.37196 1.46580 1.20925 0.84486 0.87667 1.00015 1.45263 1.54066 1.26506 1.08879 1.17029 0.79358 0.82342 0.81546 1.90784 1.40572 1.52672 1.61988 1.19518 1.15990 1.07029 0.92646 1.19498 0.92640 0.88915 0.95542 1.20636 1.00991 1.02624 0.89417 1.20557 0.95114 0.94539 0.95389 1.25296 1.01655 0.93857 0.98437 1.86682 1.36367 1.27666 1.84323 0.93422 0.78728 0.86033 0.75052 1.21087 0.98535 0.98309 0.99899 1.22187 1.00021 0.98497 0.79929 1.46301 1.29003 1.19691 1.08717 1.77589 1.24976 1.26556 0.86676 1.24652 0.90402 0.88589 1.00978 1.23468 1.02766 0.91709 0.97338 1.23541 0.90739 0.90475 0.94617 0.88740 1.87904 1.33747 1.45809 1.62928 1.23013 1.02610 0.90087 0.91737 1.23831 1.04591 0.94726 0.92740 0.85466 0.92918 0.91023 0.73719 0.83317 0.86129 0.75917 1.22133 1.17560 0.79285 0.77712 0.74656 0.91517 0.86759 0.92658 0.93771 0.88234 0.83983 0.88179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.56 113.37 1.20 1.29 16 2 O -0.35 -2.71 10.28 -51.39 -0.53 -3.24 16 3 C 0.48 4.29 6.33 71.24 0.45 4.75 16 4 O -0.53 -7.22 14.98 21.97 0.33 -6.90 16 5 C 0.16 0.48 1.12 3.38 0.00 0.48 16 6 N -0.69 -0.21 5.01 -427.93 -2.14 -2.36 16 7 C 0.61 4.21 7.43 86.42 0.64 4.86 16 8 O -0.58 -8.40 14.76 -4.41 -0.07 -8.46 16 9 C -0.34 -1.65 6.17 -19.90 -0.12 -1.77 16 10 C 0.16 0.91 6.76 39.50 0.27 1.17 16 11 C -0.12 -0.49 9.35 22.30 0.21 -0.28 16 12 C -0.05 0.07 4.53 -19.82 -0.09 -0.02 16 13 C -0.09 0.19 2.84 71.24 0.20 0.40 16 14 O -0.54 0.10 12.88 -148.98 -1.92 -1.82 16 15 Si 0.77 -3.68 31.97 68.60 2.19 -1.49 16 16 C -0.16 0.93 8.38 22.03 0.18 1.11 16 17 C 0.12 -0.44 11.17 83.30 0.93 0.49 16 18 N -0.27 -0.85 3.86 -187.28 -0.72 -1.57 16 19 N -0.34 -1.27 12.57 -56.62 -0.71 -1.98 16 20 C 0.13 -0.02 11.44 85.42 0.98 0.96 16 21 C -0.11 -0.59 6.35 31.12 0.20 -0.39 16 22 C 0.07 0.16 3.90 31.12 0.12 0.28 16 23 H 0.09 0.39 7.03 -2.38 -0.02 0.38 16 24 O -0.39 -1.25 10.72 -148.98 -1.60 -2.85 16 25 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 26 C -0.12 0.35 7.21 31.12 0.22 0.58 16 27 H 0.13 -0.31 8.14 -2.39 -0.02 -0.33 16 28 H 0.05 0.30 8.13 -2.39 -0.02 0.28 16 29 H 0.07 0.11 8.13 -2.39 -0.02 0.09 16 30 H 0.42 -3.16 7.64 -92.71 -0.71 -3.87 16 31 H 0.15 1.00 7.01 -2.91 -0.02 0.98 16 32 H 0.12 -0.18 7.71 -2.38 -0.02 -0.20 16 33 H 0.39 -3.30 8.08 -74.06 -0.60 -3.90 16 34 H -0.29 -0.95 7.11 99.48 0.71 -0.25 16 35 H -0.25 1.18 7.05 99.48 0.70 1.88 16 36 H 0.19 -2.45 7.26 -2.91 -0.02 -2.47 16 37 H 0.21 -2.09 8.06 -2.91 -0.02 -2.11 16 38 H 0.24 -2.41 7.47 -2.91 -0.02 -2.43 16 39 H 0.07 0.69 7.86 -2.39 -0.02 0.67 16 40 H 0.11 0.45 8.14 -2.38 -0.02 0.43 16 41 H 0.05 -0.20 8.14 -2.39 -0.02 -0.22 16 42 H 0.04 -0.05 8.14 -2.38 -0.02 -0.07 16 43 H 0.10 -0.37 8.14 -2.39 -0.02 -0.38 16 44 H 0.14 -1.07 8.14 -2.39 -0.02 -1.09 16 45 H 0.10 -0.51 8.09 -2.39 -0.02 -0.53 16 Total: 0.00 -29.96 386.90 1.25 -28.71 By element: Atomic # 1 Polarization: -12.91 SS G_CDS: -0.21 Total: -13.12 kcal Atomic # 6 Polarization: 8.46 SS G_CDS: 6.62 Total: 15.09 kcal Atomic # 7 Polarization: -2.34 SS G_CDS: -3.58 Total: -5.91 kcal Atomic # 8 Polarization: -19.49 SS G_CDS: -3.78 Total: -23.27 kcal Atomic # 14 Polarization: -3.68 SS G_CDS: 2.19 Total: -1.49 kcal Total: -29.96 1.25 -28.71 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_11618758.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.332 kcal (2) G-P(sol) polarization free energy of solvation -29.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -28.707 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds