Wall clock time and date at job start Sun Mar 7 2021 00:13:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34235 * 116.99777 * 2 1 4 4 O 1.20817 * 120.00284 * 0.02562 * 3 2 1 5 5 C 1.50703 * 119.99729 * 180.02562 * 3 2 1 6 6 N 1.46500 * 112.85217 * 25.32973 * 5 3 2 7 7 C 1.34781 * 119.99809 * 309.67056 * 6 5 3 8 8 O 1.21692 * 120.00293 * 359.97438 * 7 6 5 9 9 C 1.46676 * 119.99924 * 180.02562 * 7 6 5 10 10 C 1.37869 * 126.23395 * 180.02562 * 9 7 6 11 11 C 1.50699 * 126.45661 * 359.94699 * 10 9 7 12 12 C 1.39837 * 107.08769 * 179.97438 * 10 9 7 13 13 C 1.50700 * 126.07100 * 179.97438 * 12 10 9 14 14 O 1.42898 * 109.46882 * 58.99414 * 13 12 10 15 15 Si 1.86302 * 109.47223 * 298.99585 * 13 12 10 16 16 C 1.35452 * 107.86188 * 0.22554 * 12 10 9 17 17 C 1.50706 * 125.56493 * 179.77448 * 16 12 10 18 18 N 1.35531 * 108.87341 * 359.62817 * 16 12 10 19 19 C 1.53782 * 113.61193 * 254.13682 * 5 3 2 20 20 C 1.54055 * 86.98491 * 219.98118 * 19 5 3 21 21 H 1.09001 * 113.69921 * 139.98626 * 20 19 5 22 22 O 1.42901 * 113.61150 * 270.88559 * 20 19 5 23 23 C 1.42904 * 113.99614 * 247.49200 * 22 20 19 24 24 C 1.53776 * 113.61477 * 156.53002 * 5 3 2 25 25 H 1.09000 * 109.47225 * 60.00310 * 1 2 3 26 26 H 1.09000 * 109.47115 * 180.02562 * 1 2 3 27 27 H 1.09005 * 109.46919 * 300.00182 * 1 2 3 28 28 H 0.96999 * 119.99979 * 129.66685 * 6 5 3 29 29 H 1.09000 * 109.47166 * 270.02459 * 11 10 9 30 30 H 1.08994 * 109.47255 * 30.03170 * 11 10 9 31 31 H 1.09010 * 109.47262 * 150.03083 * 11 10 9 32 32 H 1.08997 * 109.47234 * 178.99113 * 13 12 10 33 33 H 0.96698 * 114.00564 * 179.97438 * 14 13 12 34 34 H 1.48494 * 109.99909 * 305.29157 * 15 13 12 35 35 H 1.48501 * 109.99655 * 66.61036 * 15 13 12 36 36 H 1.08996 * 109.47321 * 84.67914 * 17 16 12 37 37 H 1.09001 * 109.47035 * 204.68480 * 17 16 12 38 38 H 1.09001 * 109.46980 * 324.67684 * 17 16 12 39 39 H 0.96998 * 125.68047 * 180.13393 * 18 16 12 40 40 H 1.09001 * 113.61491 * 334.48126 * 19 5 3 41 41 H 1.08997 * 113.62068 * 105.38497 * 19 5 3 42 42 H 1.08995 * 109.47121 * 299.99352 * 23 22 20 43 43 H 1.08991 * 109.47313 * 59.99978 * 23 22 20 44 44 H 1.09001 * 109.46491 * 180.02562 * 23 22 20 45 45 H 1.09008 * 113.61282 * 254.61018 * 24 5 3 46 46 H 1.08998 * 113.61633 * 25.50839 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1981 0.0863 -0.5786 7 6 3.8371 -1.1416 -0.1561 8 8 2.9866 -1.2629 0.7058 9 6 4.4700 -2.3317 -0.7345 10 6 4.2003 -3.6418 -0.4005 11 6 3.2037 -4.1176 0.6250 12 6 5.0261 -4.4461 -1.1920 13 6 5.0801 -5.9520 -1.1732 14 8 3.7898 -6.4788 -1.4887 15 14 5.5912 -6.5340 0.5212 16 6 5.7730 -3.6311 -1.9747 17 6 6.8026 -4.0820 -2.9787 18 7 5.4410 -2.3440 -1.7101 19 6 4.1618 1.6915 1.3547 20 6 5.1658 2.5469 0.5586 21 1 5.3696 3.5175 1.0108 22 8 6.3553 1.8433 0.1952 23 6 7.5334 2.3155 0.8518 24 6 4.1136 2.5979 -0.5617 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5139 0.8900 28 1 4.8762 0.1829 -1.2655 29 1 3.6918 -4.1972 1.5963 30 1 2.3806 -3.4060 0.6891 31 1 2.8179 -5.0939 0.3311 32 1 5.8043 -6.2988 -1.9103 33 1 3.7502 -7.4449 -1.4953 34 1 6.8713 -5.8920 0.9139 35 1 4.5339 -6.2062 1.5110 36 1 6.3112 -4.3161 -3.9230 37 1 7.5304 -3.2857 -3.1353 38 1 7.3111 -4.9702 -2.6036 39 1 5.8263 -1.5616 -2.1346 40 1 3.4795 2.2784 1.9696 41 1 4.6234 0.8686 1.9004 42 1 7.6919 3.3649 0.6034 43 1 7.4149 2.2112 1.9302 44 1 8.3922 1.7308 0.5220 45 1 4.5364 2.5062 -1.5622 46 1 3.4181 3.4321 -0.4699 There are 63 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 63 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12297754.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:42 Heat of formation + Delta-G solvation = -108.481665 kcal Electronic energy + Delta-G solvation = -31774.460871 eV Core-core repulsion = 27440.554217 eV Total energy + Delta-G solvation = -4333.906655 eV No. of doubly occupied orbitals = 63 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 339.161 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -42.87512 -42.30972 -40.52885 -39.67234 -37.76866 -37.58682 -36.99880 -34.56353 -33.80862 -32.85068 -29.49555 -29.29063 -27.95783 -27.61112 -27.17520 -26.66909 -25.83931 -23.13823 -22.44602 -20.88236 -20.63329 -19.98773 -19.47390 -19.17195 -18.23921 -18.12955 -17.60813 -17.35200 -17.01814 -16.67644 -16.43396 -16.11563 -15.80531 -15.61448 -15.13785 -15.03307 -14.93162 -14.77010 -14.49178 -14.40207 -14.19957 -13.90721 -13.72048 -13.64792 -13.61351 -13.33450 -13.23617 -13.17457 -13.08140 -12.65920 -12.60956 -12.44581 -12.26119 -12.08414 -11.88822 -11.78971 -11.57280 -11.01060 -10.68299 -10.46689 -10.38500 -9.60551 -9.06699 -4.91042 0.29722 0.85770 1.19566 1.58809 1.63478 1.73428 1.75042 1.99189 2.15536 2.23689 2.50346 2.97356 3.23079 3.39726 3.60612 3.62358 3.76623 3.83254 4.02932 4.10885 4.14342 4.17286 4.18808 4.31897 4.38202 4.40709 4.44461 4.50102 4.51017 4.53948 4.56906 4.61488 4.63866 4.66350 4.72710 4.75149 4.84216 4.90931 4.99473 5.11355 5.13832 5.21371 5.26064 5.59558 5.75975 6.09444 6.26101 6.43858 6.54236 7.04789 7.06801 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.327 6.327 3 C 0.462 3.538 4 O -0.530 6.530 5 C 0.154 3.846 6 N -0.690 5.690 7 C 0.586 3.414 8 O -0.516 6.516 9 C -0.073 4.073 10 C -0.078 4.078 11 C -0.086 4.086 12 C -0.201 4.201 13 C -0.023 4.023 14 O -0.564 6.564 15 Si 0.744 3.256 16 C 0.092 3.908 17 C -0.095 4.095 18 N -0.520 5.520 19 C -0.151 4.151 20 C 0.079 3.921 21 H 0.113 0.887 22 O -0.380 6.380 23 C 0.026 3.974 24 C -0.112 4.112 25 H 0.062 0.938 26 H 0.112 0.888 27 H 0.059 0.941 28 H 0.415 0.585 29 H 0.047 0.953 30 H 0.068 0.932 31 H 0.074 0.926 32 H 0.099 0.901 33 H 0.399 0.601 34 H -0.307 1.307 35 H -0.296 1.296 36 H 0.094 0.906 37 H 0.090 0.910 38 H 0.099 0.901 39 H 0.432 0.568 40 H 0.108 0.892 41 H 0.075 0.925 42 H 0.059 0.941 43 H 0.043 0.957 44 H 0.096 0.904 45 H 0.110 0.890 46 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.024 -1.405 -4.857 9.484 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.241 6.241 3 C 0.305 3.695 4 O -0.420 6.420 5 C 0.064 3.936 6 N -0.345 5.345 7 C 0.375 3.625 8 O -0.392 6.392 9 C -0.185 4.185 10 C -0.087 4.087 11 C -0.143 4.143 12 C -0.207 4.207 13 C -0.134 4.134 14 O -0.373 6.373 15 Si 0.651 3.349 16 C -0.028 4.028 17 C -0.152 4.152 18 N -0.118 5.118 19 C -0.190 4.190 20 C 0.021 3.979 21 H 0.131 0.869 22 O -0.299 6.299 23 C -0.070 4.070 24 C -0.149 4.149 25 H 0.081 0.919 26 H 0.131 0.869 27 H 0.078 0.922 28 H 0.253 0.747 29 H 0.066 0.934 30 H 0.087 0.913 31 H 0.092 0.908 32 H 0.117 0.883 33 H 0.250 0.750 34 H -0.235 1.235 35 H -0.224 1.224 36 H 0.113 0.887 37 H 0.109 0.891 38 H 0.117 0.883 39 H 0.273 0.727 40 H 0.127 0.873 41 H 0.094 0.906 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.114 0.886 45 H 0.129 0.871 46 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges 7.239 -0.347 -3.634 8.107 hybrid contribution -0.258 1.216 -0.062 1.244 sum 6.981 0.869 -3.696 7.947 Atomic orbital electron populations 1.23438 0.76845 1.04655 1.02121 1.87055 1.23294 1.31693 1.82055 1.24199 0.92139 0.81753 0.71406 1.90646 1.66994 1.37100 1.47293 1.21289 0.83879 0.88682 0.99718 1.45226 1.43135 1.03085 1.43078 1.17091 0.81435 0.81910 0.82104 1.90854 1.31317 1.85529 1.31457 1.19900 1.02346 0.94196 1.02061 1.19973 0.98632 0.91144 0.98947 1.20339 0.97179 1.01659 0.95143 1.18852 1.03735 0.94805 1.03313 1.23884 0.89310 0.89874 1.10339 1.86476 1.29728 1.27699 1.93382 0.96045 0.75138 0.88563 0.75129 1.20848 1.00154 0.82524 0.99313 1.20687 0.95029 1.03548 0.95956 1.41788 1.30836 1.08381 1.30837 1.23978 0.99067 1.01251 0.94658 1.22995 0.84726 0.95524 0.94697 0.86931 1.87803 1.15568 1.59444 1.67038 1.22994 0.86627 1.00490 0.96913 1.23606 0.96961 0.93163 1.01182 0.91886 0.86923 0.92210 0.74687 0.93386 0.91308 0.90768 0.88279 0.75018 1.23526 1.22365 0.88709 0.89142 0.88267 0.72681 0.87321 0.90589 0.92215 0.93863 0.88581 0.87144 0.85352 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.18 10.56 113.37 1.20 1.38 16 2 O -0.33 -4.27 6.30 -43.48 -0.27 -4.54 16 3 C 0.46 5.05 7.07 71.24 0.50 5.55 16 4 O -0.53 -7.32 15.79 21.99 0.35 -6.97 16 5 C 0.15 0.66 1.11 3.38 0.00 0.67 16 6 N -0.69 -2.28 4.75 -427.84 -2.03 -4.31 16 7 C 0.59 5.77 7.14 86.45 0.62 6.38 16 8 O -0.52 -8.37 11.33 19.80 0.22 -8.15 16 9 C -0.07 -0.62 7.06 40.35 0.28 -0.33 16 10 C -0.08 -0.90 5.87 -19.57 -0.11 -1.01 16 11 C -0.09 -1.16 7.94 71.24 0.57 -0.59 16 12 C -0.20 -1.27 4.56 -20.12 -0.09 -1.36 16 13 C -0.02 -0.02 2.77 71.24 0.20 0.18 16 14 O -0.56 -0.96 11.90 -148.98 -1.77 -2.73 16 15 Si 0.74 1.31 31.22 68.60 2.14 3.46 16 16 C 0.09 0.08 7.13 41.35 0.29 0.38 16 17 C -0.10 0.72 9.92 71.24 0.71 1.43 16 18 N -0.52 -0.27 5.99 -171.93 -1.03 -1.30 16 19 C -0.15 -0.40 7.27 31.21 0.23 -0.18 16 20 C 0.08 -0.22 4.38 31.21 0.14 -0.08 16 21 H 0.11 -0.75 7.87 -2.39 -0.02 -0.77 16 22 O -0.38 0.77 10.00 -148.98 -1.49 -0.72 16 23 C 0.03 -0.14 10.85 113.37 1.23 1.09 16 24 C -0.11 0.23 7.06 31.12 0.22 0.45 16 25 H 0.06 0.41 8.13 -2.39 -0.02 0.39 16 26 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.06 0.47 8.13 -2.38 -0.02 0.45 16 28 H 0.42 -1.00 7.60 -92.71 -0.70 -1.71 16 29 H 0.05 0.72 7.54 -2.39 -0.02 0.70 16 30 H 0.07 1.10 6.48 -2.39 -0.02 1.08 16 31 H 0.07 0.92 6.67 -2.38 -0.02 0.90 16 32 H 0.10 -0.56 6.71 -2.39 -0.02 -0.57 16 33 H 0.40 -3.56 8.74 -74.06 -0.65 -4.21 16 34 H -0.31 -2.68 7.11 99.48 0.71 -1.98 16 35 H -0.30 -2.99 6.01 99.48 0.60 -2.40 16 36 H 0.09 -0.84 8.14 -2.39 -0.02 -0.86 16 37 H 0.09 -0.99 8.14 -2.39 -0.02 -1.01 16 38 H 0.10 -0.93 7.36 -2.39 -0.02 -0.95 16 39 H 0.43 -2.87 8.19 -92.71 -0.76 -3.63 16 40 H 0.11 0.24 8.09 -2.39 -0.02 0.22 16 41 H 0.08 0.47 8.14 -2.39 -0.02 0.45 16 42 H 0.06 -0.47 8.14 -2.39 -0.02 -0.49 16 43 H 0.04 -0.21 8.14 -2.39 -0.02 -0.23 16 44 H 0.10 -0.67 8.14 -2.39 -0.02 -0.69 16 45 H 0.11 -0.60 8.12 -2.38 -0.02 -0.61 16 46 H 0.13 -0.23 7.38 -2.39 -0.02 -0.25 16 Total: 0.00 -27.92 375.05 0.95 -26.97 By element: Atomic # 1 Polarization: -14.51 SS G_CDS: -1.14 Total: -15.65 kcal Atomic # 6 Polarization: 7.97 SS G_CDS: 5.98 Total: 13.95 kcal Atomic # 7 Polarization: -2.55 SS G_CDS: -3.06 Total: -5.62 kcal Atomic # 8 Polarization: -20.14 SS G_CDS: -2.96 Total: -23.11 kcal Atomic # 14 Polarization: 1.31 SS G_CDS: 2.14 Total: 3.46 kcal Total: -27.92 0.95 -26.97 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12297754.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.513 kcal (2) G-P(sol) polarization free energy of solvation -27.918 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.431 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.969 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.482 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds