Wall clock time and date at job start Sun Mar 7 2021 00:13:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00382 * 2 1 4 4 O 1.20823 * 119.99697 * 359.97438 * 3 2 1 5 5 C 1.50696 * 120.00256 * 179.97438 * 3 2 1 6 6 N 1.46495 * 112.84917 * 335.63945 * 5 3 2 7 7 C 1.34778 * 120.00160 * 292.14940 * 6 5 3 8 8 O 1.21615 * 119.99635 * 5.06769 * 7 6 5 9 9 C 1.47304 * 120.00311 * 185.06508 * 7 6 5 10 10 C 1.39819 * 120.13394 * 0.02562 * 9 7 6 11 11 C 1.37580 * 119.96625 * 179.97438 * 10 9 7 12 12 C 1.50697 * 119.88442 * 179.97438 * 11 10 9 13 13 O 1.42902 * 109.47011 * 255.00408 * 12 11 10 14 14 Si 1.86297 * 109.46873 * 14.99803 * 12 11 10 15 15 C 1.39146 * 120.23607 * 0.02562 * 11 10 9 16 16 O 1.35716 * 119.86190 * 179.97438 * 15 11 10 17 17 C 1.42895 * 117.00413 * 180.02562 * 16 15 11 18 18 C 1.38720 * 120.27704 * 359.97438 * 15 11 10 19 19 C 1.38409 * 120.03381 * 359.74228 * 18 15 11 20 20 O 1.35656 * 120.12444 * 180.27579 * 19 18 15 21 21 C 1.42899 * 116.99799 * 0.23455 * 20 19 18 22 22 C 1.53781 * 113.61444 * 204.43869 * 5 3 2 23 23 C 1.53780 * 87.08045 * 219.93614 * 22 5 3 24 24 H 1.09005 * 113.61400 * 140.06923 * 23 22 5 25 25 O 1.42900 * 113.61691 * 270.88284 * 23 22 5 26 26 C 1.42902 * 114.00176 * 210.00076 * 25 23 22 27 27 C 1.53780 * 87.08300 * 25.43605 * 23 22 5 28 28 H 1.08993 * 109.46767 * 59.99867 * 1 2 3 29 29 H 1.08998 * 109.46952 * 180.02562 * 1 2 3 30 30 H 1.09005 * 109.47033 * 300.00551 * 1 2 3 31 31 H 0.97005 * 120.00407 * 112.15451 * 6 5 3 32 32 H 1.08001 * 120.01883 * 0.02562 * 10 9 7 33 33 H 1.08992 * 109.47562 * 135.00399 * 12 11 10 34 34 H 0.96696 * 114.00102 * 299.99932 * 13 12 11 35 35 H 1.48498 * 110.00319 * 298.68366 * 14 12 11 36 36 H 1.48507 * 109.99660 * 60.00475 * 14 12 11 37 37 H 1.09007 * 109.47110 * 59.99709 * 17 16 15 38 38 H 1.08997 * 109.47508 * 179.97438 * 17 16 15 39 39 H 1.09003 * 109.47130 * 300.00015 * 17 16 15 40 40 H 1.08005 * 119.98758 * 180.02562 * 18 15 11 41 41 H 1.08992 * 109.47152 * 299.99723 * 21 20 19 42 42 H 1.09003 * 109.47096 * 59.99815 * 21 20 19 43 43 H 1.09003 * 109.46978 * 179.97438 * 21 20 19 44 44 H 1.09001 * 113.60973 * 105.38800 * 22 5 3 45 45 H 1.08994 * 113.69319 * 334.49847 * 22 5 3 46 46 H 1.09001 * 109.46685 * 60.00196 * 26 25 23 47 47 H 1.08995 * 109.47480 * 300.00175 * 26 25 23 48 48 H 1.08998 * 109.46901 * 180.02562 * 26 25 23 49 49 H 1.08998 * 113.61620 * 89.10971 * 27 23 22 50 50 H 1.08997 * 113.61290 * 220.01812 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1986 0.0766 0.5579 7 6 4.0688 -0.2058 1.8694 8 8 3.3522 0.4817 2.5714 9 6 4.7948 -1.3472 2.4524 10 6 5.6198 -2.1392 1.6480 11 6 6.2967 -3.2041 2.1963 12 6 7.1850 -4.0569 1.3275 13 8 6.5371 -5.3026 1.0618 14 14 7.5149 -3.1736 -0.2792 15 6 6.1634 -3.4972 3.5500 16 8 6.8342 -4.5498 4.0828 17 6 6.6525 -4.7956 5.4787 18 6 5.3476 -2.7180 4.3572 19 6 4.6659 -1.6405 3.8187 20 8 3.8720 -0.8739 4.6076 21 6 3.7890 -1.2328 5.9883 22 6 4.1142 2.5882 0.5835 23 6 5.1654 2.5560 -0.5385 24 1 5.3688 3.5341 -0.9744 25 8 6.3552 1.8464 -0.1880 26 6 7.5328 2.3296 -0.8376 27 6 4.1625 1.7158 -1.3467 28 1 -0.3632 0.5138 -0.8899 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5139 0.8900 31 1 4.7106 -0.5137 -0.0169 32 1 5.7263 -1.9147 0.5970 33 1 8.1283 -4.2404 1.8417 34 1 6.3344 -5.8175 1.8548 35 1 6.2396 -2.9459 -1.0049 36 1 8.1885 -1.8764 -0.0165 37 1 5.5985 -4.9881 5.6795 38 1 7.2426 -5.6628 5.7748 39 1 6.9772 -3.9237 6.0465 40 1 5.2478 -2.9495 5.4075 41 1 3.3990 -2.2466 6.0774 42 1 4.7815 -1.1846 6.4365 43 1 3.1237 -0.5405 6.5043 44 1 4.5378 2.4795 1.5819 45 1 3.4196 3.4246 0.5072 46 1 7.6915 3.3747 -0.5717 47 1 7.4134 2.2436 -1.9175 48 1 8.3917 1.7388 -0.5192 49 1 3.4801 2.3130 -1.9515 50 1 4.6251 0.9030 -1.9065 There are 71 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 71 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12297780.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:45 Heat of formation + Delta-G solvation = -189.648044 kcal Electronic energy + Delta-G solvation = -38421.477229 eV Core-core repulsion = 33383.886322 eV Total energy + Delta-G solvation = -5037.590907 eV No. of doubly occupied orbitals = 71 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 382.164 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.67010 -42.04230 -40.74567 -40.25792 -39.60455 -38.43010 -37.81133 -37.07866 -36.99322 -34.34996 -32.32339 -31.77686 -29.45062 -29.05065 -28.26839 -27.78495 -27.18944 -26.53753 -26.10042 -24.74193 -23.15573 -22.72325 -21.74466 -20.61180 -20.12964 -19.32437 -18.91218 -18.55396 -18.29548 -17.88586 -17.46837 -17.39380 -17.27526 -17.18614 -16.81271 -16.67055 -16.43829 -16.11241 -15.92927 -15.83570 -15.72454 -15.43686 -15.30594 -14.84438 -14.51340 -14.40301 -14.27450 -13.95934 -13.77919 -13.65273 -13.56148 -13.43962 -13.31863 -13.09206 -12.69155 -12.62940 -12.60818 -12.59104 -12.21595 -12.18200 -12.12857 -11.96134 -11.77666 -11.69497 -11.37185 -11.17437 -10.91236 -10.69300 -10.37201 -10.04343 -9.31023 -4.78833 -0.41769 -0.04010 0.84909 1.38525 1.43785 1.66734 1.73620 1.74412 1.95249 1.97998 2.06362 2.46358 2.54282 3.08918 3.13752 3.30848 3.39109 3.42797 3.50106 3.64909 3.67877 3.95019 3.98164 4.04738 4.10939 4.13980 4.14974 4.15976 4.21007 4.24109 4.28464 4.36810 4.40820 4.45881 4.48609 4.52887 4.55051 4.56314 4.61938 4.64270 4.66080 4.69057 4.75399 4.80626 4.87605 4.91906 5.13206 5.16518 5.17201 5.90818 6.14384 6.16678 6.27441 6.48284 6.66026 7.01377 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.361 6.361 3 C 0.471 3.529 4 O -0.527 6.527 5 C 0.151 3.849 6 N -0.687 5.687 7 C 0.572 3.428 8 O -0.552 6.552 9 C -0.226 4.226 10 C -0.009 4.009 11 C -0.198 4.198 12 C -0.077 4.077 13 O -0.545 6.545 14 Si 0.792 3.208 15 C 0.213 3.787 16 O -0.310 6.310 17 C 0.011 3.989 18 C -0.304 4.304 19 C 0.218 3.782 20 O -0.305 6.305 21 C 0.010 3.990 22 C -0.127 4.127 23 C 0.078 3.922 24 H 0.117 0.883 25 O -0.385 6.385 26 C 0.022 3.978 27 C -0.130 4.130 28 H 0.072 0.928 29 H 0.126 0.874 30 H 0.051 0.949 31 H 0.411 0.589 32 H 0.142 0.858 33 H 0.086 0.914 34 H 0.373 0.627 35 H -0.273 1.273 36 H -0.257 1.257 37 H 0.070 0.930 38 H 0.128 0.872 39 H 0.068 0.932 40 H 0.171 0.829 41 H 0.074 0.926 42 H 0.074 0.926 43 H 0.112 0.888 44 H 0.069 0.931 45 H 0.117 0.883 46 H 0.052 0.948 47 H 0.062 0.938 48 H 0.091 0.909 49 H 0.130 0.870 50 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.480 -4.634 -0.521 7.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.277 6.277 3 C 0.313 3.687 4 O -0.416 6.416 5 C 0.062 3.938 6 N -0.341 5.341 7 C 0.361 3.639 8 O -0.430 6.430 9 C -0.230 4.230 10 C -0.027 4.027 11 C -0.199 4.199 12 C -0.185 4.185 13 O -0.352 6.352 14 Si 0.691 3.309 15 C 0.165 3.835 16 O -0.222 6.222 17 C -0.083 4.083 18 C -0.323 4.323 19 C 0.169 3.831 20 O -0.216 6.216 21 C -0.084 4.084 22 C -0.165 4.165 23 C 0.020 3.980 24 H 0.135 0.865 25 O -0.304 6.304 26 C -0.074 4.074 27 C -0.167 4.167 28 H 0.091 0.909 29 H 0.145 0.855 30 H 0.070 0.930 31 H 0.250 0.750 32 H 0.159 0.841 33 H 0.104 0.896 34 H 0.222 0.778 35 H -0.200 1.200 36 H -0.182 1.182 37 H 0.088 0.912 38 H 0.146 0.854 39 H 0.087 0.913 40 H 0.188 0.812 41 H 0.092 0.908 42 H 0.093 0.907 43 H 0.130 0.870 44 H 0.088 0.912 45 H 0.135 0.865 46 H 0.071 0.929 47 H 0.080 0.920 48 H 0.109 0.891 49 H 0.148 0.852 50 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 5.669 -3.080 -1.058 6.538 hybrid contribution -1.148 -0.066 2.073 2.370 sum 4.521 -3.146 1.015 5.600 Atomic orbital electron populations 1.23513 0.75077 1.05476 1.02413 1.86528 1.24809 1.33180 1.83165 1.24228 0.92210 0.81388 0.70859 1.90634 1.66987 1.37082 1.46891 1.21348 0.83439 0.88327 1.00707 1.45228 1.54468 1.25543 1.08889 1.18039 0.80374 0.83782 0.81660 1.90816 1.39512 1.51737 1.60951 1.19064 1.08957 1.02435 0.92532 1.20827 0.91414 0.91836 0.98628 1.19676 1.06257 1.01202 0.92810 1.25317 0.95124 0.87868 1.10173 1.86678 1.81201 1.30868 1.36431 0.92528 0.82940 0.77639 0.77746 1.18786 0.87819 0.85654 0.91264 1.86045 1.64131 1.43798 1.28186 1.23535 1.03917 1.03937 0.76866 1.21460 1.07317 1.00528 1.02990 1.18907 0.86906 0.88031 0.89276 1.86370 1.61210 1.51709 1.22294 1.23503 1.03887 1.03227 0.77828 1.23583 0.97839 0.94894 1.00211 1.22958 0.84716 0.96294 0.94034 0.86507 1.87914 1.15806 1.58102 1.68548 1.23046 0.86534 0.99998 0.97777 1.23876 0.98341 1.02005 0.92516 0.90941 0.85541 0.92983 0.75023 0.84141 0.89600 0.77828 1.19976 1.18232 0.91157 0.85431 0.91334 0.81187 0.90777 0.90750 0.86951 0.91215 0.86450 0.92945 0.91985 0.89094 0.85235 0.86932 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.18 10.56 113.37 1.20 1.37 16 2 O -0.36 -4.35 10.28 -51.44 -0.53 -4.88 16 3 C 0.47 6.09 6.47 71.23 0.46 6.55 16 4 O -0.53 -8.84 15.81 21.97 0.35 -8.50 16 5 C 0.15 1.17 1.01 3.39 0.00 1.18 16 6 N -0.69 -5.81 4.35 -427.27 -1.86 -7.67 16 7 C 0.57 8.04 7.23 86.63 0.63 8.67 16 8 O -0.55 -11.59 13.84 16.88 0.23 -11.36 16 9 C -0.23 -2.44 5.89 -20.00 -0.12 -2.56 16 10 C -0.01 -0.06 8.13 22.50 0.18 0.13 16 11 C -0.20 -0.89 5.27 -19.80 -0.10 -1.00 16 12 C -0.08 -0.10 2.32 71.24 0.17 0.07 16 13 O -0.55 -1.35 12.65 -148.98 -1.89 -3.23 16 14 Si 0.79 -0.94 30.39 68.60 2.08 1.15 16 15 C 0.21 0.60 6.62 22.60 0.15 0.75 16 16 O -0.31 0.34 9.35 -90.38 -0.85 -0.50 16 17 C 0.01 -0.09 9.80 113.37 1.11 1.02 16 18 C -0.30 -0.88 8.01 22.43 0.18 -0.70 16 19 C 0.22 2.02 6.70 22.82 0.15 2.18 16 20 O -0.30 -3.35 8.56 -68.76 -0.59 -3.94 16 21 C 0.01 0.00 9.81 113.37 1.11 1.11 16 22 C -0.13 -0.93 6.70 31.12 0.21 -0.72 16 23 C 0.08 0.03 4.37 31.12 0.14 0.17 16 24 H 0.12 -0.54 7.87 -2.38 -0.02 -0.56 16 25 O -0.38 -0.97 10.13 -148.98 -1.51 -2.48 16 26 C 0.02 -0.08 10.85 113.37 1.23 1.15 16 27 C -0.13 0.07 7.20 31.12 0.22 0.30 16 28 H 0.07 0.31 8.13 -2.39 -0.02 0.29 16 29 H 0.13 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.05 0.44 8.13 -2.38 -0.02 0.43 16 31 H 0.41 1.74 6.71 -92.70 -0.62 1.12 16 32 H 0.14 0.58 3.25 -2.91 -0.01 0.57 16 33 H 0.09 -0.08 7.82 -2.39 -0.02 -0.10 16 34 H 0.37 -0.54 8.58 -74.06 -0.64 -1.17 16 35 H -0.27 -0.69 6.81 99.48 0.68 -0.01 16 36 H -0.26 -0.28 7.11 99.48 0.71 0.43 16 37 H 0.07 -0.66 7.65 -2.38 -0.02 -0.68 16 38 H 0.13 -1.47 8.14 -2.39 -0.02 -1.49 16 39 H 0.07 -0.62 7.65 -2.39 -0.02 -0.64 16 40 H 0.17 -0.57 4.50 -2.91 -0.01 -0.58 16 41 H 0.07 -0.27 7.65 -2.39 -0.02 -0.28 16 42 H 0.07 -0.27 7.67 -2.39 -0.02 -0.29 16 43 H 0.11 -0.17 8.14 -2.39 -0.02 -0.19 16 44 H 0.07 0.88 7.34 -2.39 -0.02 0.87 16 45 H 0.12 0.85 7.39 -2.39 -0.02 0.83 16 46 H 0.05 -0.24 8.14 -2.39 -0.02 -0.26 16 47 H 0.06 -0.41 8.14 -2.39 -0.02 -0.43 16 48 H 0.09 -0.37 8.14 -2.39 -0.02 -0.38 16 49 H 0.13 -0.40 8.10 -2.39 -0.02 -0.42 16 50 H 0.11 -0.45 8.10 -2.39 -0.02 -0.47 16 Total: 0.00 -27.26 411.61 2.13 -25.13 By element: Atomic # 1 Polarization: -3.15 SS G_CDS: -0.24 Total: -3.38 kcal Atomic # 6 Polarization: 12.75 SS G_CDS: 6.92 Total: 19.67 kcal Atomic # 7 Polarization: -5.81 SS G_CDS: -1.86 Total: -7.67 kcal Atomic # 8 Polarization: -30.11 SS G_CDS: -4.78 Total: -34.89 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: 2.08 Total: 1.15 kcal Total: -27.26 2.13 -25.13 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12297780.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -164.521 kcal (2) G-P(sol) polarization free energy of solvation -27.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -191.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.130 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -25.127 kcal (6) G-S(sol) free energy of system = (1) + (5) -189.648 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds