Wall clock time and date at job start Sun Mar 7 2021 00:13:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34233 * 117.00470 * 2 1 4 4 O 1.20833 * 119.98957 * 0.02562 * 3 2 1 5 5 C 1.50689 * 120.00535 * 180.02562 * 3 2 1 6 6 N 1.46496 * 112.85232 * 35.49297 * 5 3 2 7 7 C 1.34780 * 119.99970 * 66.98775 * 6 5 3 8 8 O 1.21573 * 119.99702 * 354.93559 * 7 6 5 9 9 C 1.47694 * 120.00088 * 174.92926 * 7 6 5 10 10 C 1.39825 * 120.16544 * 180.02562 * 9 7 6 11 11 F 1.35101 * 120.11037 * 0.02562 * 10 9 7 12 12 C 1.38319 * 119.77668 * 179.97438 * 10 9 7 13 13 C 1.38197 * 120.11912 * 359.97438 * 12 10 9 14 14 C 1.38461 * 120.34243 * 0.02562 * 13 12 10 15 15 C 1.50699 * 119.89289 * 180.27656 * 14 13 12 16 16 O 1.42903 * 109.46740 * 119.72480 * 15 14 13 17 17 Si 1.86292 * 109.47234 * 359.72667 * 15 14 13 18 18 C 1.37856 * 120.21387 * 0.02562 * 14 13 12 19 19 C 1.53790 * 113.68825 * 264.22555 * 5 3 2 20 20 C 1.53783 * 87.07918 * 220.00558 * 19 5 3 21 21 H 1.09005 * 113.69097 * 139.98977 * 20 19 5 22 22 O 1.42898 * 113.61950 * 270.88502 * 20 19 5 23 23 C 1.42901 * 113.99853 * 247.50241 * 22 20 19 24 24 C 1.53780 * 113.61573 * 166.69306 * 5 3 2 25 25 H 1.08996 * 109.47193 * 299.99722 * 1 2 3 26 26 H 1.09000 * 109.47423 * 60.00290 * 1 2 3 27 27 H 1.09002 * 109.47227 * 180.02562 * 1 2 3 28 28 H 0.97004 * 120.00508 * 246.99432 * 6 5 3 29 29 H 1.08007 * 119.94050 * 180.02562 * 12 10 9 30 30 H 1.08009 * 119.83134 * 180.02562 * 13 12 10 31 31 H 1.08999 * 109.47269 * 239.72289 * 15 14 13 32 32 H 0.96699 * 114.00383 * 299.99611 * 16 15 14 33 33 H 1.48498 * 110.00106 * 179.97438 * 17 15 14 34 34 H 1.48497 * 110.00074 * 301.31846 * 17 15 14 35 35 H 1.08008 * 120.05847 * 179.97438 * 18 14 13 36 36 H 1.08995 * 113.61520 * 334.55680 * 19 5 3 37 37 H 1.08997 * 113.61263 * 105.46006 * 19 5 3 38 38 H 1.09001 * 109.47032 * 299.99039 * 23 22 20 39 39 H 1.08995 * 109.47668 * 59.99945 * 23 22 20 40 40 H 1.09005 * 109.46606 * 179.97438 * 23 22 20 41 41 H 1.09005 * 113.61126 * 254.61451 * 24 5 3 42 42 H 1.09005 * 113.61537 * 25.43011 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5662 1.2749 -0.0006 6 7 4.1916 0.2072 -0.7848 7 6 4.0339 0.1730 -2.1230 8 8 3.2987 0.9727 -2.6689 9 6 4.7542 -0.8357 -2.9260 10 6 4.5936 -0.8739 -4.3144 11 9 3.7787 0.0127 -4.9270 12 6 5.2725 -1.8217 -5.0587 13 6 6.1073 -2.7276 -4.4324 14 6 6.2700 -2.6942 -3.0578 15 6 7.1877 -3.6829 -2.3859 16 8 8.2279 -2.9797 -1.7037 17 14 7.9361 -4.8069 -3.6693 18 6 5.5993 -1.7562 -2.3023 19 6 4.1764 1.4484 1.4004 20 6 5.1720 2.4296 0.7592 21 1 5.3808 3.3056 1.3734 22 8 6.3575 1.8020 0.2665 23 6 7.5420 2.1520 0.9851 24 6 4.1095 2.6765 -0.3248 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5138 -0.8900 27 1 -0.3634 -1.0277 0.0005 28 1 4.7192 -0.4753 -0.3412 29 1 5.1506 -1.8533 -6.1314 30 1 6.6355 -3.4655 -5.0181 31 1 6.6201 -4.2767 -1.6694 32 1 8.7749 -2.4295 -2.2808 33 1 8.8437 -5.7863 -3.0195 34 1 6.8632 -5.5202 -4.4076 35 1 5.7278 -1.7327 -1.2302 36 1 3.5008 1.9171 2.1159 37 1 4.6438 0.5433 1.7882 38 1 7.6991 3.2289 0.9240 39 1 7.4334 1.8592 2.0293 40 1 8.3971 1.6345 0.5500 41 1 4.5229 2.7628 -1.3298 42 1 3.4150 3.4809 -0.0823 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12335834.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:49 Heat of formation + Delta-G solvation = -164.672031 kcal Electronic energy + Delta-G solvation = -31172.489579 eV Core-core repulsion = 26614.967360 eV Total energy + Delta-G solvation = -4557.522219 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 340.125 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -50.03481 -42.60243 -41.12740 -40.39279 -39.56221 -37.79122 -37.41948 -37.04437 -34.57152 -32.51397 -32.19078 -29.44965 -27.76905 -27.14330 -26.67679 -26.57973 -25.31440 -23.35597 -22.69546 -21.70234 -20.60436 -19.44733 -19.19263 -18.35985 -18.28877 -18.20646 -17.62075 -17.32057 -17.20397 -16.93979 -16.77934 -16.27785 -16.04534 -15.95510 -15.77185 -15.68777 -15.47653 -14.85300 -14.78826 -14.54424 -14.39935 -14.37066 -13.76444 -13.64227 -13.49071 -13.44138 -13.19105 -13.06573 -12.85430 -12.56683 -12.19643 -12.12633 -12.07084 -11.96608 -11.83662 -11.69143 -11.23950 -10.65675 -10.47150 -10.44011 -10.23920 -9.81716 -4.93871 -0.51987 -0.02644 0.84050 1.33849 1.40968 1.67189 1.70464 1.71735 2.04053 2.46012 2.58554 3.03611 3.09343 3.17530 3.31924 3.44234 3.45825 3.56607 3.66916 3.70305 3.99756 4.09822 4.12768 4.16384 4.18137 4.41938 4.46092 4.48719 4.52399 4.54628 4.59097 4.62152 4.68153 4.73671 4.76595 4.79466 4.84195 4.94758 4.96620 5.12688 5.14026 5.17579 5.59158 6.20039 6.22697 6.48903 6.82334 6.92340 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.467 3.533 4 O -0.528 6.528 5 C 0.152 3.848 6 N -0.672 5.672 7 C 0.561 3.439 8 O -0.565 6.565 9 C -0.185 4.185 10 C 0.133 3.867 11 F -0.138 7.138 12 C -0.151 4.151 13 C -0.050 4.050 14 C -0.133 4.133 15 C -0.066 4.066 16 O -0.550 6.550 17 Si 0.770 3.230 18 C -0.020 4.020 19 C -0.127 4.127 20 C 0.078 3.922 21 H 0.113 0.887 22 O -0.379 6.379 23 C 0.024 3.976 24 C -0.131 4.131 25 H 0.071 0.929 26 H 0.048 0.952 27 H 0.130 0.870 28 H 0.422 0.578 29 H 0.168 0.832 30 H 0.169 0.831 31 H 0.119 0.881 32 H 0.397 0.603 33 H -0.301 1.301 34 H -0.281 1.281 35 H 0.157 0.843 36 H 0.126 0.874 37 H 0.118 0.882 38 H 0.047 0.953 39 H 0.058 0.942 40 H 0.096 0.904 41 H 0.068 0.932 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.597 -4.349 3.074 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.275 6.275 3 C 0.309 3.691 4 O -0.416 6.416 5 C 0.063 3.937 6 N -0.327 5.327 7 C 0.350 3.650 8 O -0.444 6.444 9 C -0.189 4.189 10 C 0.113 3.887 11 F -0.116 7.116 12 C -0.170 4.170 13 C -0.067 4.067 14 C -0.133 4.133 15 C -0.176 4.176 16 O -0.358 6.358 17 Si 0.676 3.324 18 C -0.039 4.039 19 C -0.165 4.165 20 C 0.020 3.980 21 H 0.131 0.869 22 O -0.297 6.297 23 C -0.072 4.072 24 C -0.169 4.169 25 H 0.090 0.910 26 H 0.067 0.933 27 H 0.148 0.852 28 H 0.263 0.737 29 H 0.185 0.815 30 H 0.186 0.814 31 H 0.137 0.863 32 H 0.247 0.753 33 H -0.229 1.229 34 H -0.207 1.207 35 H 0.174 0.826 36 H 0.144 0.856 37 H 0.137 0.863 38 H 0.066 0.934 39 H 0.077 0.923 40 H 0.114 0.886 41 H 0.087 0.913 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.658 -4.691 2.757 8.599 hybrid contribution -1.188 0.447 0.353 1.317 sum 5.471 -4.244 3.110 7.590 Atomic orbital electron populations 1.23523 0.75124 1.05624 1.02298 1.86505 1.24730 1.32972 1.83283 1.24313 0.92370 0.81411 0.70969 1.90647 1.67137 1.37352 1.46507 1.21345 0.83253 0.91262 0.97838 1.45134 1.53027 1.29089 1.05403 1.18389 0.80575 0.83561 0.82475 1.90866 1.39082 1.42325 1.72134 1.19925 1.05082 1.01419 0.92507 1.18218 0.91110 0.89393 0.90017 1.91558 1.70352 1.66793 1.82929 1.21379 0.98288 0.94965 1.02358 1.21397 0.94997 0.96570 0.93748 1.20490 1.00188 0.98737 0.93914 1.25115 0.90288 0.98106 1.04101 1.86492 1.45025 1.65289 1.38960 0.93805 0.80218 0.79025 0.79331 1.21165 0.90772 0.90709 1.01211 1.23850 0.98049 1.03195 0.91393 1.22935 0.84968 0.95914 0.94184 0.86923 1.87903 1.15408 1.69148 1.57260 1.23026 0.86498 1.00600 0.97029 1.23596 0.97839 0.94186 1.01264 0.91047 0.93282 0.85165 0.73742 0.81464 0.81413 0.86328 0.75300 1.22897 1.20740 0.82600 0.85589 0.86322 0.93441 0.92330 0.88554 0.91345 0.86804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.36 -3.23 10.41 -51.44 -0.54 -3.77 16 3 C 0.47 5.10 6.42 71.23 0.46 5.56 16 4 O -0.53 -8.64 15.66 21.94 0.34 -8.29 16 5 C 0.15 0.72 1.00 3.38 0.00 0.72 16 6 N -0.67 -2.32 4.47 -426.91 -1.91 -4.22 16 7 C 0.56 5.62 7.25 86.74 0.63 6.25 16 8 O -0.56 -10.99 14.06 -3.95 -0.06 -11.05 16 9 C -0.19 -0.93 5.88 -20.05 -0.12 -1.05 16 10 C 0.13 0.85 7.29 22.67 0.17 1.01 16 11 F -0.14 -1.90 15.55 44.97 0.70 -1.20 16 12 C -0.15 0.25 10.01 22.28 0.22 0.47 16 13 C -0.05 0.30 8.66 22.31 0.19 0.50 16 14 C -0.13 0.69 5.38 -19.90 -0.11 0.58 16 15 C -0.07 0.46 2.82 71.24 0.20 0.66 16 16 O -0.55 3.54 12.76 -148.98 -1.90 1.64 16 17 Si 0.77 -5.77 29.78 68.60 2.04 -3.72 16 18 C -0.02 0.04 9.09 22.52 0.20 0.25 16 19 C -0.13 0.47 7.20 31.12 0.22 0.70 16 20 C 0.08 -0.17 4.37 31.12 0.14 -0.03 16 21 H 0.11 -0.72 7.87 -2.38 -0.02 -0.74 16 22 O -0.38 0.43 10.13 -148.98 -1.51 -1.07 16 23 C 0.02 -0.15 10.85 113.37 1.23 1.08 16 24 C -0.13 -0.70 6.67 31.12 0.21 -0.49 16 25 H 0.07 0.20 8.13 -2.39 -0.02 0.18 16 26 H 0.05 0.37 8.13 -2.39 -0.02 0.35 16 27 H 0.13 -0.26 8.14 -2.39 -0.02 -0.28 16 28 H 0.42 -1.20 6.72 -92.71 -0.62 -1.83 16 29 H 0.17 -0.98 8.06 -2.91 -0.02 -1.00 16 30 H 0.17 -1.98 4.86 -2.91 -0.01 -1.99 16 31 H 0.12 -0.80 7.96 -2.39 -0.02 -0.82 16 32 H 0.40 -5.46 8.70 -74.06 -0.64 -6.10 16 33 H -0.30 -0.31 7.11 99.48 0.71 0.40 16 34 H -0.28 0.85 7.11 99.48 0.71 1.56 16 35 H 0.16 -0.96 6.42 -2.91 -0.02 -0.98 16 36 H 0.13 -0.72 8.10 -2.39 -0.02 -0.74 16 37 H 0.12 -0.94 8.09 -2.39 -0.02 -0.95 16 38 H 0.05 -0.31 8.14 -2.39 -0.02 -0.33 16 39 H 0.06 -0.51 8.14 -2.39 -0.02 -0.53 16 40 H 0.10 -0.72 8.14 -2.38 -0.02 -0.74 16 41 H 0.07 0.74 7.41 -2.38 -0.02 0.72 16 42 H 0.11 0.70 7.35 -2.38 -0.02 0.69 16 Total: 0.00 -29.18 360.85 1.88 -27.30 By element: Atomic # 1 Polarization: -12.99 SS G_CDS: -0.14 Total: -13.13 kcal Atomic # 6 Polarization: 12.68 SS G_CDS: 4.85 Total: 17.53 kcal Atomic # 7 Polarization: -2.32 SS G_CDS: -1.91 Total: -4.22 kcal Atomic # 8 Polarization: -18.89 SS G_CDS: -3.66 Total: -22.55 kcal Atomic # 9 Polarization: -1.90 SS G_CDS: 0.70 Total: -1.20 kcal Atomic # 14 Polarization: -5.77 SS G_CDS: 2.04 Total: -3.72 kcal Total: -29.18 1.88 -27.30 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12335834.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -137.371 kcal (2) G-P(sol) polarization free energy of solvation -29.183 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -166.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.883 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -27.301 kcal (6) G-S(sol) free energy of system = (1) + (5) -164.672 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds