Wall clock time and date at job start Sun Mar 7 2021 00:13:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45196 * 1 3 3 C 1.34234 * 116.99759 * 2 1 4 4 O 1.20825 * 120.00366 * 359.97438 * 3 2 1 5 5 C 1.50704 * 119.99746 * 179.97438 * 3 2 1 6 6 N 1.46498 * 112.84941 * 35.49220 * 5 3 2 7 7 C 1.34781 * 119.99911 * 66.99162 * 6 5 3 8 8 O 1.21591 * 120.00158 * 354.92506 * 7 6 5 9 9 C 1.47577 * 119.99946 * 174.92299 * 7 6 5 10 10 C 1.40203 * 119.83242 * 0.20879 * 9 7 6 11 11 C 1.36237 * 120.37817 * 180.25991 * 10 9 7 12 12 C 1.39876 * 119.95804 * 359.77554 * 11 10 9 13 13 C 1.46253 * 133.84256 * 179.97438 * 12 11 10 14 14 C 1.50701 * 126.48129 * 0.05841 * 13 12 11 15 15 O 1.42894 * 109.47360 * 74.99987 * 14 13 12 16 16 Si 1.86307 * 109.46935 * 194.99833 * 14 13 12 17 17 C 1.34455 * 107.03727 * 180.02562 * 13 12 11 18 18 N 1.36563 * 109.98413 * 0.02562 * 17 13 12 19 19 C 1.37831 * 109.85903 * 359.97438 * 18 17 13 20 20 C 1.38642 * 133.37583 * 179.97438 * 19 18 17 21 21 C 1.53777 * 113.69195 * 264.22125 * 5 3 2 22 22 C 1.53779 * 87.08339 * 220.00850 * 21 5 3 23 23 H 1.08997 * 113.68822 * 139.99009 * 22 21 5 24 24 O 1.42892 * 113.61545 * 270.88286 * 22 21 5 25 25 C 1.42899 * 114.00234 * 247.49232 * 24 22 21 26 26 C 1.53780 * 113.61039 * 166.68983 * 5 3 2 27 27 H 1.09000 * 109.47176 * 60.00086 * 1 2 3 28 28 H 1.08997 * 109.46747 * 179.97438 * 1 2 3 29 29 H 1.09002 * 109.47406 * 299.99935 * 1 2 3 30 30 H 0.96997 * 120.00010 * 246.98401 * 6 5 3 31 31 H 1.07998 * 119.81232 * 0.03381 * 10 9 7 32 32 H 1.08000 * 120.02033 * 179.79290 * 11 10 9 33 33 H 1.08995 * 109.47332 * 314.99727 * 14 13 12 34 34 H 0.96699 * 114.00559 * 179.97438 * 15 14 13 35 35 H 1.48503 * 109.99704 * 178.67634 * 16 14 13 36 36 H 1.48496 * 110.00007 * 299.99822 * 16 14 13 37 37 H 1.08002 * 125.00631 * 179.97438 * 17 13 12 38 38 H 0.97001 * 125.06740 * 180.02562 * 18 17 13 39 39 H 1.07997 * 120.16716 * 0.02562 * 20 19 18 40 40 H 1.09003 * 113.61285 * 334.56157 * 21 5 3 41 41 H 1.09001 * 113.61027 * 105.45928 * 21 5 3 42 42 H 1.09005 * 109.46673 * 60.00597 * 25 24 22 43 43 H 1.08997 * 109.47168 * 179.97438 * 25 24 22 44 44 H 1.09000 * 109.47478 * 300.00630 * 25 24 22 45 45 H 1.09009 * 113.61394 * 254.61272 * 26 5 3 46 46 H 1.08999 * 113.62043 * 25.51313 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2094 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1922 0.2069 -0.7828 7 6 4.0356 0.1722 -2.1210 8 8 3.3007 0.9717 -2.6680 9 6 4.7560 -0.8360 -2.9224 10 6 5.5992 -1.7590 -2.2876 11 6 6.2737 -2.6911 -3.0171 12 6 6.1229 -2.7333 -4.4071 13 6 6.6824 -3.5783 -5.4616 14 6 7.6505 -4.7183 -5.2771 15 8 6.9591 -5.8487 -4.7423 16 14 8.3990 -5.1697 -6.9224 17 6 6.1690 -3.1460 -6.6267 18 7 5.3276 -2.0937 -6.4041 19 6 5.2749 -1.8134 -5.0556 20 6 4.5925 -0.8679 -4.3056 21 6 4.1754 1.4491 1.4018 22 6 5.1714 2.4300 0.7610 23 1 5.3797 3.3062 1.3750 24 8 6.3572 1.8022 0.2696 25 6 7.5413 2.1526 0.9888 26 6 4.1097 2.6764 -0.3239 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0277 -0.0005 29 1 -0.3634 0.5138 0.8900 30 1 4.7195 -0.4753 -0.3384 31 1 5.7174 -1.7286 -1.2145 32 1 6.9242 -3.3972 -2.5225 33 1 8.4403 -4.4166 -4.5892 34 1 7.5217 -6.6217 -4.5976 35 1 9.3794 -6.2716 -6.7491 36 1 7.3325 -5.5830 -7.8694 37 1 6.3902 -3.5683 -7.5958 38 1 4.8393 -1.6153 -7.0923 39 1 3.9401 -0.1575 -4.7914 40 1 3.4992 1.9181 2.1166 41 1 4.6424 0.5442 1.7904 42 1 7.4318 1.8603 2.0332 43 1 8.3966 1.6349 0.5547 44 1 7.6984 3.2295 0.9275 45 1 4.5239 2.7624 -1.3286 46 1 3.4157 3.4810 -0.0810 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12335838.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:13:56 Heat of formation + Delta-G solvation = -87.806191 kcal Electronic energy + Delta-G solvation = -32998.407333 eV Core-core repulsion = 28436.256432 eV Total energy + Delta-G solvation = -4562.150901 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.62779 -42.31625 -40.78959 -39.91561 -37.91716 -37.74748 -37.53181 -37.00086 -34.27720 -33.34901 -30.79881 -30.65455 -29.32948 -27.72934 -27.09705 -26.64492 -26.29842 -24.67680 -23.63444 -22.73623 -21.65725 -20.61027 -20.51482 -19.34951 -19.21539 -18.42436 -18.31943 -18.24428 -17.50558 -17.32276 -17.15835 -16.94518 -16.21208 -16.04771 -15.92914 -15.81708 -15.41248 -15.31821 -15.01396 -14.85749 -14.77442 -14.76056 -14.44853 -14.38241 -13.83498 -13.70509 -13.46162 -13.40294 -13.14839 -13.01966 -12.65655 -12.59305 -12.52759 -12.19329 -12.13647 -12.03521 -11.92546 -11.85448 -11.62807 -11.14409 -10.76789 -10.60142 -10.31156 -10.30922 -9.35968 -8.78900 -4.83263 -0.33244 0.39273 0.89007 1.34034 1.40362 1.57007 1.67176 1.76719 1.90128 2.02869 2.16344 2.62382 2.85656 3.15500 3.23675 3.49764 3.51341 3.57614 3.70683 3.74876 3.83609 4.06001 4.12143 4.15755 4.19561 4.20731 4.30135 4.39064 4.45471 4.52133 4.53254 4.56855 4.58933 4.60768 4.63884 4.71197 4.77369 4.80138 4.83839 4.97740 4.98788 5.20730 5.21633 5.23030 5.42727 5.51560 5.62460 5.98866 6.24846 6.34878 6.51986 6.53887 6.73040 7.04175 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.359 6.359 3 C 0.468 3.532 4 O -0.529 6.529 5 C 0.153 3.847 6 N -0.674 5.674 7 C 0.569 3.431 8 O -0.576 6.576 9 C -0.132 4.132 10 C -0.102 4.102 11 C -0.080 4.080 12 C -0.079 4.079 13 C -0.189 4.189 14 C -0.050 4.050 15 O -0.562 6.562 16 Si 0.768 3.232 17 C 0.088 3.912 18 N -0.578 5.578 19 C 0.067 3.933 20 C -0.067 4.067 21 C -0.129 4.129 22 C 0.078 3.922 23 H 0.112 0.888 24 O -0.379 6.379 25 C 0.024 3.976 26 C -0.131 4.131 27 H 0.049 0.951 28 H 0.129 0.871 29 H 0.070 0.930 30 H 0.422 0.578 31 H 0.153 0.847 32 H 0.145 0.855 33 H 0.085 0.915 34 H 0.391 0.609 35 H -0.290 1.290 36 H -0.287 1.287 37 H 0.203 0.797 38 H 0.434 0.566 39 H 0.126 0.874 40 H 0.125 0.875 41 H 0.119 0.881 42 H 0.059 0.941 43 H 0.094 0.906 44 H 0.047 0.953 45 H 0.069 0.931 46 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.445 -2.503 2.327 8.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.274 6.274 3 C 0.310 3.690 4 O -0.418 6.418 5 C 0.064 3.936 6 N -0.328 5.328 7 C 0.359 3.641 8 O -0.456 6.456 9 C -0.136 4.136 10 C -0.121 4.121 11 C -0.098 4.098 12 C -0.084 4.084 13 C -0.196 4.196 14 C -0.158 4.158 15 O -0.371 6.371 16 Si 0.672 3.328 17 C -0.041 4.041 18 N -0.181 5.181 19 C -0.040 4.040 20 C -0.088 4.088 21 C -0.166 4.166 22 C 0.019 3.981 23 H 0.130 0.870 24 O -0.297 6.297 25 C -0.072 4.072 26 C -0.169 4.169 27 H 0.068 0.932 28 H 0.147 0.853 29 H 0.089 0.911 30 H 0.263 0.737 31 H 0.170 0.830 32 H 0.162 0.838 33 H 0.103 0.897 34 H 0.241 0.759 35 H -0.217 1.217 36 H -0.214 1.214 37 H 0.220 0.780 38 H 0.274 0.726 39 H 0.144 0.856 40 H 0.143 0.857 41 H 0.137 0.863 42 H 0.078 0.922 43 H 0.113 0.887 44 H 0.066 0.934 45 H 0.088 0.912 46 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 6.260 -1.921 1.072 6.635 hybrid contribution -0.884 -0.707 0.500 1.238 sum 5.376 -2.628 1.572 6.187 Atomic orbital electron populations 1.23517 0.75206 1.05557 1.02298 1.86520 1.24660 1.32984 1.83254 1.24334 0.92392 0.81370 0.70900 1.90639 1.67177 1.37343 1.46607 1.21323 0.83219 0.91310 0.97791 1.45162 1.53025 1.29003 1.05621 1.18424 0.80125 0.83329 0.82222 1.90789 1.39738 1.42874 1.72247 1.19325 1.02403 0.99010 0.92856 1.20888 0.96144 0.94248 1.00858 1.20398 0.99573 0.98518 0.91299 1.19558 0.98295 0.96273 0.94256 1.19798 1.07137 1.00974 0.91680 1.24306 0.96030 0.85420 1.10089 1.86593 1.40707 1.24496 1.85335 0.94216 0.77886 0.85947 0.74709 1.22204 0.92100 0.89544 1.00279 1.41763 1.40496 1.29964 1.05891 1.18094 1.01674 0.99347 0.84868 1.20077 0.98919 0.97252 0.92556 1.23849 0.98064 1.03187 0.91510 1.22937 0.84955 0.95893 0.94291 0.86992 1.87913 1.15416 1.69119 1.57274 1.23021 0.86544 1.00580 0.97041 1.23597 0.97769 0.94221 1.01297 0.93189 0.85297 0.91092 0.73702 0.82961 0.83751 0.89673 0.75922 1.21678 1.21420 0.78012 0.72600 0.85620 0.85668 0.86316 0.92229 0.88742 0.93449 0.91183 0.86816 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.12 10.56 113.37 1.20 1.32 16 2 O -0.36 -3.27 10.41 -51.45 -0.54 -3.80 16 3 C 0.47 5.06 6.42 71.24 0.46 5.51 16 4 O -0.53 -8.50 15.66 21.97 0.34 -8.16 16 5 C 0.15 0.72 1.00 3.38 0.00 0.73 16 6 N -0.67 -2.62 4.47 -427.00 -1.91 -4.53 16 7 C 0.57 5.77 7.24 86.71 0.63 6.39 16 8 O -0.58 -10.46 15.03 -4.00 -0.06 -10.52 16 9 C -0.13 -0.95 5.87 -20.08 -0.12 -1.07 16 10 C -0.10 -0.21 9.46 22.28 0.21 0.00 16 11 C -0.08 -0.23 10.03 22.20 0.22 -0.01 16 12 C -0.08 -0.43 6.35 -20.14 -0.13 -0.56 16 13 C -0.19 -0.45 5.60 -18.65 -0.10 -0.56 16 14 C -0.05 0.05 3.05 71.24 0.22 0.27 16 15 O -0.56 -1.20 12.86 -148.98 -1.92 -3.11 16 16 Si 0.77 -3.26 30.79 68.60 2.11 -1.15 16 17 C 0.09 -0.10 10.43 83.09 0.87 0.77 16 18 N -0.58 0.04 6.07 -187.71 -1.14 -1.10 16 19 C 0.07 0.37 7.26 38.95 0.28 0.66 16 20 C -0.07 -0.53 9.61 22.63 0.22 -0.31 16 21 C -0.13 0.46 7.20 31.12 0.22 0.68 16 22 C 0.08 -0.16 4.37 31.12 0.14 -0.02 16 23 H 0.11 -0.70 7.87 -2.39 -0.02 -0.72 16 24 O -0.38 0.26 10.13 -148.98 -1.51 -1.24 16 25 C 0.02 -0.14 10.85 113.37 1.23 1.09 16 26 C -0.13 -0.68 6.67 31.12 0.21 -0.47 16 27 H 0.05 0.36 8.13 -2.39 -0.02 0.34 16 28 H 0.13 -0.21 8.14 -2.39 -0.02 -0.23 16 29 H 0.07 0.20 8.13 -2.39 -0.02 0.18 16 30 H 0.42 -0.90 6.68 -92.71 -0.62 -1.52 16 31 H 0.15 -0.67 6.37 -2.91 -0.02 -0.68 16 32 H 0.14 -0.14 8.06 -2.91 -0.02 -0.16 16 33 H 0.09 -0.34 7.96 -2.39 -0.02 -0.36 16 34 H 0.39 -2.34 8.74 -74.06 -0.65 -2.98 16 35 H -0.29 -0.19 7.11 99.48 0.71 0.52 16 36 H -0.29 -0.32 7.04 99.48 0.70 0.38 16 37 H 0.20 -1.51 6.30 -2.91 -0.02 -1.53 16 38 H 0.43 -2.47 8.96 -92.71 -0.83 -3.30 16 39 H 0.13 1.11 7.62 -2.91 -0.02 1.08 16 40 H 0.13 -0.70 8.10 -2.39 -0.02 -0.72 16 41 H 0.12 -0.92 8.09 -2.39 -0.02 -0.94 16 42 H 0.06 -0.51 8.14 -2.38 -0.02 -0.53 16 43 H 0.09 -0.65 8.14 -2.39 -0.02 -0.66 16 44 H 0.05 -0.29 8.14 -2.39 -0.02 -0.31 16 45 H 0.07 0.72 7.41 -2.38 -0.02 0.71 16 46 H 0.11 0.66 7.35 -2.39 -0.02 0.65 16 Total: 0.00 -30.12 389.88 0.14 -29.98 By element: Atomic # 1 Polarization: -9.79 SS G_CDS: -1.00 Total: -10.79 kcal Atomic # 6 Polarization: 8.67 SS G_CDS: 5.75 Total: 14.42 kcal Atomic # 7 Polarization: -2.58 SS G_CDS: -3.05 Total: -5.63 kcal Atomic # 8 Polarization: -23.16 SS G_CDS: -3.68 Total: -26.84 kcal Atomic # 14 Polarization: -3.26 SS G_CDS: 2.11 Total: -1.15 kcal Total: -30.12 0.14 -29.98 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12335838.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -57.825 kcal (2) G-P(sol) polarization free energy of solvation -30.119 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.981 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.806 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds