Wall clock time and date at job start Sun Mar 7 2021 00:14:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45208 * 1 3 3 C 1.34224 * 116.99824 * 2 1 4 4 O 1.20826 * 120.00394 * 359.97438 * 3 2 1 5 5 C 1.50705 * 119.99825 * 180.02562 * 3 2 1 6 6 N 1.46495 * 112.84677 * 324.06510 * 5 3 2 7 7 C 1.34780 * 120.00122 * 293.64171 * 6 5 3 8 8 O 1.21550 * 120.00080 * 354.97466 * 7 6 5 9 9 C 1.47848 * 119.99799 * 174.96824 * 7 6 5 10 10 C 1.39545 * 120.14239 * 0.02562 * 9 7 6 11 11 C 1.38068 * 119.84090 * 180.02562 * 10 9 7 12 12 Br 1.89105 * 119.93409 * 179.97438 * 11 10 9 13 13 C 1.38420 * 120.12693 * 359.97438 * 11 10 9 14 14 C 1.38362 * 120.28292 * 0.02562 * 13 11 10 15 15 C 1.50698 * 119.92358 * 179.97438 * 14 13 11 16 16 O 1.42907 * 109.47309 * 119.99814 * 15 14 13 17 17 Si 1.86302 * 109.47194 * 0.02562 * 15 14 13 18 18 C 1.37948 * 120.15513 * 359.97438 * 14 13 11 19 19 C 1.53787 * 113.61327 * 192.87029 * 5 3 2 20 20 C 1.53781 * 87.07924 * 270.80030 * 19 5 3 21 21 H 1.08993 * 113.61677 * 89.20391 * 20 19 5 22 22 O 1.42901 * 113.61038 * 220.02219 * 20 19 5 23 23 C 1.42904 * 114.00043 * 210.00133 * 22 20 19 24 24 C 1.53777 * 113.68999 * 95.33518 * 5 3 2 25 25 H 1.09003 * 109.46639 * 299.99916 * 1 2 3 26 26 H 1.08993 * 109.47061 * 60.00126 * 1 2 3 27 27 H 1.09001 * 109.46717 * 180.02562 * 1 2 3 28 28 H 0.97005 * 119.99873 * 113.64582 * 6 5 3 29 29 H 1.08001 * 120.07502 * 0.04264 * 10 9 7 30 30 H 1.08002 * 119.85729 * 179.72746 * 13 11 10 31 31 H 1.08997 * 109.47256 * 239.99794 * 15 14 13 32 32 H 0.96695 * 114.00281 * 180.02562 * 16 15 14 33 33 H 1.48499 * 109.99721 * 298.68158 * 17 15 14 34 34 H 1.48497 * 109.99886 * 59.99506 * 17 15 14 35 35 H 1.08002 * 120.05762 * 180.02562 * 18 14 13 36 36 H 1.09005 * 113.61218 * 25.34417 * 19 5 3 37 37 H 1.08998 * 113.61231 * 156.16473 * 19 5 3 38 38 H 1.08998 * 109.47314 * 179.97438 * 23 22 20 39 39 H 1.09001 * 109.46544 * 299.99856 * 23 22 20 40 40 H 1.09002 * 109.47200 * 59.99716 * 23 22 20 41 41 H 1.09001 * 113.60949 * 203.67124 * 24 5 3 42 42 H 1.08995 * 113.61883 * 334.58129 * 24 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4521 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 -0.0006 6 7 4.1919 0.2129 0.7912 7 6 4.0242 0.1812 2.1282 8 8 3.4314 1.0828 2.6878 9 6 4.5611 -0.9502 2.9140 10 6 5.2425 -1.9866 2.2746 11 6 5.7409 -3.0404 3.0144 12 35 6.6641 -4.4466 2.1505 13 6 5.5661 -3.0695 4.3872 14 6 4.8914 -2.0446 5.0265 15 6 4.7052 -2.0849 6.5214 16 8 5.3210 -0.9370 7.1092 17 14 5.4927 -3.6292 7.2040 18 6 4.3886 -0.9861 4.2988 19 6 4.1098 2.6788 0.3134 20 6 4.0435 2.9565 -1.1977 21 1 3.0861 3.3609 -1.5258 22 8 5.1589 3.7004 -1.6924 23 6 4.8538 4.5255 -2.8186 24 6 4.1760 1.4382 -1.4029 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 4.7269 -0.4676 0.3533 29 1 5.3799 -1.9642 1.2036 30 1 5.9540 -3.8981 4.9612 31 1 3.6406 -2.0857 6.7551 32 1 5.2405 -0.8972 8.0720 33 1 4.8401 -4.8306 6.6246 34 1 6.9444 -3.6395 6.8920 35 1 3.8625 -0.1868 4.7995 36 1 3.4249 3.2910 0.9002 37 1 5.1235 2.6751 0.7140 38 1 5.7518 5.0571 -3.1334 39 1 4.4934 3.9033 -3.6377 40 1 4.0834 5.2458 -2.5432 41 1 5.2084 1.0955 -1.4727 42 1 3.5447 1.0489 -2.2016 There are 62 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 62 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12335870.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:15 Heat of formation + Delta-G solvation = -116.812589 kcal Electronic energy + Delta-G solvation = -29850.046423 eV Core-core repulsion = 25424.235518 eV Total energy + Delta-G solvation = -4425.810905 eV No. of doubly occupied orbitals = 62 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 400.045 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.74859 -41.45792 -40.38159 -39.68974 -37.88075 -37.66756 -37.27813 -34.83017 -33.79465 -32.99697 -30.62197 -29.43149 -27.96342 -27.19347 -27.07438 -26.53960 -25.08220 -23.23630 -22.78933 -21.59453 -20.89637 -19.57601 -18.93687 -18.47290 -18.21994 -17.94282 -17.64194 -17.38630 -17.28433 -16.78806 -16.34930 -16.26343 -16.03540 -15.57155 -15.31821 -15.16993 -14.94457 -14.90352 -14.52203 -14.36512 -14.24217 -13.77487 -13.65889 -13.61433 -13.41097 -13.10326 -12.80828 -12.64052 -12.50536 -12.40613 -12.19271 -12.10783 -12.00727 -11.96442 -11.86918 -11.62270 -11.29803 -10.70666 -10.62297 -10.50976 -10.25911 -10.01198 -4.98834 -0.69810 -0.28463 0.26212 0.72749 1.19141 1.24748 1.46631 1.60763 1.62907 1.90396 2.30607 2.72568 2.95571 3.06696 3.10962 3.19093 3.38938 3.48500 3.59222 3.61082 3.74573 3.86716 3.92282 4.05603 4.13613 4.17972 4.19973 4.36631 4.42667 4.45129 4.50343 4.51556 4.56514 4.58265 4.62299 4.68517 4.74622 4.79821 4.85445 4.93553 4.98176 5.12668 5.23470 6.10789 6.11293 6.40638 6.80349 6.84756 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.476 3.524 4 O -0.519 6.519 5 C 0.154 3.846 6 N -0.688 5.688 7 C 0.567 3.433 8 O -0.555 6.555 9 C -0.130 4.130 10 C -0.041 4.041 11 C -0.099 4.099 12 Br -0.026 7.026 13 C -0.080 4.080 14 C -0.083 4.083 15 C -0.083 4.083 16 O -0.563 6.563 17 Si 0.769 3.231 18 C -0.024 4.024 19 C -0.117 4.117 20 C 0.066 3.934 21 H 0.096 0.904 22 O -0.386 6.386 23 C 0.021 3.979 24 C -0.122 4.122 25 H 0.054 0.946 26 H 0.071 0.929 27 H 0.133 0.867 28 H 0.425 0.575 29 H 0.170 0.830 30 H 0.134 0.866 31 H 0.101 0.899 32 H 0.407 0.593 33 H -0.278 1.278 34 H -0.289 1.289 35 H 0.140 0.860 36 H 0.069 0.931 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.057 0.943 40 H 0.045 0.955 41 H 0.140 0.860 42 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.147 -4.559 -0.707 4.616 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.269 6.269 3 C 0.317 3.683 4 O -0.406 6.406 5 C 0.065 3.935 6 N -0.344 5.344 7 C 0.355 3.645 8 O -0.433 6.433 9 C -0.134 4.134 10 C -0.062 4.062 11 C -0.178 4.178 12 Br 0.060 6.940 13 C -0.099 4.099 14 C -0.084 4.084 15 C -0.192 4.192 16 O -0.373 6.373 17 Si 0.674 3.326 18 C -0.043 4.043 19 C -0.155 4.155 20 C 0.007 3.993 21 H 0.114 0.886 22 O -0.304 6.304 23 C -0.075 4.075 24 C -0.160 4.160 25 H 0.072 0.928 26 H 0.090 0.910 27 H 0.151 0.849 28 H 0.266 0.734 29 H 0.188 0.812 30 H 0.151 0.849 31 H 0.119 0.881 32 H 0.259 0.741 33 H -0.205 1.205 34 H -0.216 1.216 35 H 0.158 0.842 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.075 0.925 40 H 0.063 0.937 41 H 0.158 0.842 42 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges 0.565 -4.783 -1.380 5.010 hybrid contribution -0.848 0.532 -0.338 1.056 sum -0.283 -4.251 -1.717 4.594 Atomic orbital electron populations 1.23598 0.74507 1.05906 1.02590 1.86491 1.25066 1.32140 1.83185 1.23522 0.91371 0.81753 0.71620 1.90679 1.66852 1.37271 1.45797 1.21027 0.84917 0.90490 0.97091 1.45496 1.52781 1.30374 1.05713 1.18331 0.78627 0.85202 0.82297 1.90839 1.42928 1.38510 1.71069 1.19801 1.03496 0.95875 0.94268 1.21490 0.93008 0.90276 1.01385 1.21695 1.04435 0.97041 0.94675 1.96841 1.74573 1.44364 1.78232 1.21215 0.96563 0.98506 0.93646 1.19607 0.98530 0.94454 0.95858 1.24870 1.03475 1.00557 0.90327 1.86441 1.79291 1.43690 1.27910 0.94058 0.76563 0.72631 0.89372 1.21287 0.94238 0.96616 0.92178 1.23482 1.02722 0.92105 0.97198 1.23529 0.90740 0.91467 0.93594 0.88593 1.87916 1.33710 1.60095 1.48707 1.23028 1.02754 0.94003 0.87712 1.23859 1.04542 0.96258 0.91333 0.92764 0.91033 0.84918 0.73417 0.81245 0.84863 0.88140 0.74146 1.20509 1.21604 0.84249 0.91190 0.87062 0.88277 0.92478 0.93663 0.84155 0.87564 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.21 16 2 O -0.35 -1.76 10.42 -51.35 -0.54 -2.29 16 3 C 0.48 3.61 6.45 71.24 0.46 4.07 16 4 O -0.52 -6.76 15.12 21.97 0.33 -6.43 16 5 C 0.15 0.38 1.11 3.39 0.00 0.39 16 6 N -0.69 0.05 5.07 -426.75 -2.17 -2.11 16 7 C 0.57 3.46 7.42 86.79 0.64 4.11 16 8 O -0.56 -7.92 15.39 -3.87 -0.06 -7.98 16 9 C -0.13 -0.47 5.87 -20.09 -0.12 -0.59 16 10 C -0.04 0.03 9.27 22.54 0.21 0.23 16 11 C -0.10 -0.17 6.22 22.27 0.14 -0.04 16 12 Br -0.03 -0.02 33.69 -20.37 -0.69 -0.70 16 13 C -0.08 -0.27 8.41 22.34 0.19 -0.08 16 14 C -0.08 -0.30 5.42 -19.90 -0.11 -0.40 16 15 C -0.08 0.13 2.81 71.24 0.20 0.33 16 16 O -0.56 0.39 12.74 -148.98 -1.90 -1.51 16 17 Si 0.77 -2.69 29.78 68.60 2.04 -0.65 16 18 C -0.02 -0.13 9.15 22.53 0.21 0.08 16 19 C -0.12 -0.63 6.15 31.12 0.19 -0.43 16 20 C 0.07 0.12 3.92 31.12 0.12 0.25 16 21 H 0.10 0.27 7.35 -2.39 -0.02 0.26 16 22 O -0.39 -1.23 10.71 -148.98 -1.60 -2.82 16 23 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 24 C -0.12 0.43 7.21 31.12 0.22 0.65 16 25 H 0.05 0.17 8.13 -2.39 -0.02 0.15 16 26 H 0.07 -0.03 8.13 -2.39 -0.02 -0.05 16 27 H 0.13 -0.72 8.14 -2.39 -0.02 -0.74 16 28 H 0.43 -3.11 6.76 -92.70 -0.63 -3.74 16 29 H 0.17 -1.25 6.42 -2.91 -0.02 -1.27 16 30 H 0.13 0.38 4.86 -2.91 -0.01 0.36 16 31 H 0.10 -0.54 7.96 -2.39 -0.02 -0.56 16 32 H 0.41 -4.57 8.74 -74.06 -0.65 -5.22 16 33 H -0.28 -0.29 7.11 99.48 0.71 0.42 16 34 H -0.29 -1.04 7.11 99.48 0.71 -0.33 16 35 H 0.14 1.00 7.65 -2.91 -0.02 0.98 16 36 H 0.07 0.76 7.64 -2.38 -0.02 0.74 16 37 H 0.11 0.53 8.14 -2.39 -0.02 0.51 16 38 H 0.10 -0.37 8.14 -2.39 -0.02 -0.39 16 39 H 0.06 -0.24 8.14 -2.39 -0.02 -0.26 16 40 H 0.04 -0.07 8.14 -2.39 -0.02 -0.09 16 41 H 0.14 -1.06 8.14 -2.39 -0.02 -1.08 16 42 H 0.11 -0.68 8.10 -2.39 -0.02 -0.70 16 Total: 0.00 -24.62 378.55 0.08 -24.54 By element: Atomic # 1 Polarization: -10.86 SS G_CDS: -0.14 Total: -11.01 kcal Atomic # 6 Polarization: 6.18 SS G_CDS: 4.79 Total: 10.96 kcal Atomic # 7 Polarization: 0.05 SS G_CDS: -2.17 Total: -2.11 kcal Atomic # 8 Polarization: -17.27 SS G_CDS: -3.76 Total: -21.03 kcal Atomic # 14 Polarization: -2.69 SS G_CDS: 2.04 Total: -0.65 kcal Atomic # 35 Polarization: -0.02 SS G_CDS: -0.69 Total: -0.70 kcal Total: -24.62 0.08 -24.54 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12335870.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -92.273 kcal (2) G-P(sol) polarization free energy of solvation -24.617 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -24.540 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.813 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds