Wall clock time and date at job start Sun Mar 7 2021 00:14:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53005 * 109.46754 * 2 1 4 4 C 1.52995 * 109.46887 * 188.26379 * 3 2 1 5 5 C 1.52997 * 109.47195 * 68.26620 * 3 2 1 6 6 C 1.50699 * 109.47325 * 172.51078 * 5 3 2 7 7 O 1.21276 * 119.99890 * 106.57935 * 6 5 3 8 8 N 1.34777 * 119.99898 * 286.58318 * 6 5 3 9 9 C 1.46493 * 120.00360 * 182.80307 * 8 6 5 10 10 C 1.50704 * 112.84639 * 309.66787 * 9 8 6 11 11 O 1.20823 * 119.99817 * 205.32526 * 10 9 8 12 12 O 1.34226 * 120.00401 * 25.33000 * 10 9 8 13 13 C 1.45201 * 117.00333 * 179.97438 * 12 10 9 14 14 C 1.53780 * 113.62000 * 178.47080 * 9 8 6 15 15 C 1.53783 * 87.07911 * 270.88537 * 14 9 8 16 16 H 1.09000 * 113.61181 * 220.02125 * 15 14 9 17 17 O 1.42896 * 113.61846 * 89.19709 * 15 14 9 18 18 C 1.42896 * 114.00422 * 149.99784 * 17 15 14 19 19 C 1.53785 * 113.61334 * 80.85742 * 9 8 6 20 20 N 1.46505 * 109.47159 * 292.50966 * 5 3 2 21 21 C 1.36344 * 125.63255 * 307.40392 * 20 5 3 22 22 C 1.34853 * 108.21304 * 179.97438 * 21 20 5 23 23 C 1.40887 * 107.42215 * 0.02562 * 22 21 20 24 24 C 1.34850 * 107.41422 * 359.73182 * 23 22 21 25 25 C 1.50704 * 125.89020 * 180.25086 * 24 23 22 26 26 O 1.42898 * 109.47400 * 210.20476 * 25 24 23 27 27 Si 1.86296 * 109.47389 * 330.20775 * 25 24 23 28 28 H 1.09000 * 109.47251 * 46.87747 * 1 2 3 29 29 H 1.09002 * 109.46842 * 166.87509 * 1 2 3 30 30 H 1.08996 * 109.47750 * 286.87236 * 1 2 3 31 31 H 1.08994 * 109.47059 * 239.99903 * 2 1 3 32 32 H 1.09004 * 109.46462 * 119.99658 * 2 1 3 33 33 H 1.08997 * 109.46583 * 308.26611 * 3 2 1 34 34 H 1.09001 * 109.47055 * 55.55039 * 4 3 2 35 35 H 1.08996 * 109.47713 * 295.55514 * 4 3 2 36 36 H 1.08998 * 109.46975 * 175.55242 * 4 3 2 37 37 H 1.09007 * 109.47495 * 52.50847 * 5 3 2 38 38 H 0.96997 * 119.99765 * 2.80207 * 8 6 5 39 39 H 1.08999 * 109.46901 * 300.00321 * 13 12 10 40 40 H 1.08998 * 109.46485 * 60.00381 * 13 12 10 41 41 H 1.08998 * 109.47122 * 180.02562 * 13 12 10 42 42 H 1.09000 * 113.61131 * 25.43127 * 14 9 8 43 43 H 1.08999 * 113.61448 * 156.25276 * 14 9 8 44 44 H 1.09003 * 109.46910 * 60.00113 * 18 17 15 45 45 H 1.08998 * 109.47356 * 180.02562 * 18 17 15 46 46 H 1.09001 * 109.47140 * 300.00670 * 18 17 15 47 47 H 1.08997 * 113.61481 * 203.66775 * 19 9 8 48 48 H 1.09000 * 113.61763 * 334.57481 * 19 9 8 49 49 H 1.07989 * 125.89500 * 0.02562 * 21 20 5 50 50 H 1.07999 * 126.28773 * 179.97438 * 22 21 20 51 51 H 1.07999 * 126.29358 * 179.97438 * 23 22 21 52 52 H 1.08997 * 109.46911 * 90.20808 * 25 24 23 53 53 H 0.96694 * 114.00431 * 180.02562 * 26 25 24 54 54 H 1.48507 * 109.99882 * 299.99821 * 27 25 24 55 55 H 1.48503 * 110.00181 * 61.31238 * 27 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 3.5558 1.4476 -0.2073 5 6 1.7063 2.1014 1.3399 6 6 2.3655 3.4547 1.4123 7 8 1.6975 4.4611 1.3045 8 7 3.6975 3.5464 1.5967 9 6 4.3299 4.8612 1.7285 10 6 3.9358 5.8130 0.6285 11 8 4.6710 6.7224 0.3244 12 8 2.7682 5.6506 -0.0133 13 6 2.4537 6.6050 -1.0614 14 6 5.8470 4.7937 1.9706 15 6 5.5254 4.7385 3.4734 16 1 6.2054 5.3290 4.0873 17 8 5.3389 3.4119 3.9706 18 6 5.7069 3.2478 5.3416 19 6 4.2087 5.4645 3.1379 20 7 0.2546 2.2585 1.4589 21 6 -0.5577 2.8554 0.5408 22 6 -1.8236 2.8064 1.0029 23 6 -1.7917 2.1559 2.2522 24 6 -0.5082 1.8269 2.5032 25 6 -0.0036 1.1093 3.7286 26 8 1.3335 1.5283 4.0092 27 14 -1.0987 1.5139 5.1804 28 1 -0.3634 0.7025 -0.7501 29 1 -0.3633 -1.0009 -0.2334 30 1 -0.3634 0.2982 0.9834 31 1 1.8933 -0.5138 -0.8899 32 1 1.8933 -0.5138 0.8901 33 1 1.5609 1.9971 -0.8069 34 1 3.7990 0.9087 -1.1231 35 1 4.0400 0.9616 0.6396 36 1 3.9082 2.4760 -0.2863 37 1 2.0719 1.4752 2.1538 38 1 4.2373 2.7418 1.6421 39 1 2.4188 7.6095 -0.6395 40 1 3.2212 6.5619 -1.8342 41 1 1.4849 6.3603 -1.4969 42 1 6.3098 3.8834 1.5894 43 1 6.3779 5.6967 1.6691 44 1 5.1039 3.9114 5.9615 45 1 5.5362 2.2142 5.6424 46 1 6.7617 3.4929 5.4664 47 1 4.2923 6.5511 3.1563 48 1 3.3499 5.0955 3.6985 49 1 -0.2419 3.2915 -0.3953 50 1 -2.7006 3.1952 0.5069 51 1 -2.6398 1.9541 2.8897 52 1 -0.0177 0.0339 3.5514 53 1 1.7231 1.1056 4.7867 54 1 -1.0881 2.9774 5.4323 55 1 -2.4856 1.0545 4.9141 There are 72 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 72 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12360566.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:18 Heat of formation + Delta-G solvation = -78.842835 kcal Electronic energy + Delta-G solvation = -40716.598808 eV Core-core repulsion = 35917.364533 eV Total energy + Delta-G solvation = -4799.234276 eV No. of doubly occupied orbitals = 72 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 381.208 amu Computer time = 1.62 seconds Orbital eigenvalues (eV) -43.03705 -42.35309 -40.58685 -39.87921 -37.71066 -37.67129 -37.60081 -36.89737 -34.17675 -33.01475 -31.29449 -31.18378 -29.38398 -27.93998 -27.61988 -27.09057 -26.27052 -25.92493 -24.50138 -22.95788 -22.32991 -22.18497 -21.05799 -20.51726 -20.04852 -19.20140 -18.70774 -18.29698 -18.19698 -17.89241 -17.50516 -17.24427 -16.80749 -16.44045 -16.16259 -15.99362 -15.64397 -15.47073 -15.17777 -15.14515 -14.87483 -14.72417 -14.53632 -14.47378 -14.34220 -14.17328 -14.03765 -13.70604 -13.61075 -13.45005 -13.30667 -13.21685 -13.15382 -13.02786 -12.85165 -12.75772 -12.55352 -12.30328 -12.15361 -12.00582 -11.96929 -11.91749 -11.88457 -11.73610 -11.59362 -11.48369 -10.88128 -10.56099 -10.47427 -10.17538 -9.56988 -8.91633 -4.99195 0.86819 0.96772 1.41028 1.54358 1.64404 1.70481 1.74215 1.96596 2.12132 2.20788 2.60941 3.05894 3.25215 3.28693 3.41264 3.48556 3.58154 3.70687 3.75457 3.82748 4.09534 4.12156 4.17535 4.18789 4.20245 4.22738 4.32110 4.41943 4.43486 4.46631 4.50331 4.54825 4.55343 4.61769 4.64623 4.66955 4.69855 4.70529 4.72287 4.74881 4.80841 4.91579 5.00406 5.02643 5.12864 5.19551 5.23424 5.25364 5.27967 5.29239 5.29586 5.46882 5.92421 6.19058 6.21301 6.27457 6.47171 6.58588 6.88022 7.16546 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.108 4.108 3 C -0.092 4.092 4 C -0.160 4.160 5 C 0.128 3.872 6 C 0.506 3.494 7 O -0.520 6.520 8 N -0.681 5.681 9 C 0.154 3.846 10 C 0.460 3.540 11 O -0.535 6.535 12 O -0.320 6.320 13 C 0.023 3.977 14 C -0.113 4.113 15 C 0.082 3.918 16 H 0.108 0.892 17 O -0.372 6.372 18 C 0.026 3.974 19 C -0.152 4.152 20 N -0.402 5.402 21 C 0.022 3.978 22 C -0.220 4.220 23 C -0.227 4.227 24 C 0.025 3.975 25 C -0.044 4.044 26 O -0.559 6.559 27 Si 0.800 3.200 28 H 0.042 0.958 29 H 0.051 0.949 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.079 0.921 33 H 0.066 0.934 34 H 0.079 0.921 35 H 0.085 0.915 36 H 0.056 0.944 37 H 0.159 0.841 38 H 0.423 0.577 39 H 0.053 0.947 40 H 0.063 0.937 41 H 0.112 0.888 42 H 0.113 0.887 43 H 0.123 0.877 44 H 0.041 0.959 45 H 0.105 0.895 46 H 0.053 0.947 47 H 0.099 0.901 48 H 0.073 0.927 49 H 0.157 0.843 50 H 0.138 0.862 51 H 0.130 0.870 52 H 0.107 0.893 53 H 0.408 0.592 54 H -0.322 1.322 55 H -0.292 1.292 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.939 -8.216 4.576 11.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C -0.145 4.145 3 C -0.111 4.111 4 C -0.217 4.217 5 C 0.023 3.977 6 C 0.292 3.708 7 O -0.394 6.394 8 N -0.339 5.339 9 C 0.064 3.936 10 C 0.303 3.697 11 O -0.425 6.425 12 O -0.234 6.234 13 C -0.071 4.071 14 C -0.151 4.151 15 C 0.024 3.976 16 H 0.126 0.874 17 O -0.290 6.290 18 C -0.070 4.070 19 C -0.191 4.191 20 N -0.077 5.077 21 C -0.109 4.109 22 C -0.243 4.243 23 C -0.252 4.252 24 C -0.087 4.087 25 C -0.154 4.154 26 O -0.370 6.370 27 Si 0.707 3.293 28 H 0.061 0.939 29 H 0.070 0.930 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.098 0.902 33 H 0.084 0.916 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.075 0.925 37 H 0.176 0.824 38 H 0.264 0.736 39 H 0.072 0.928 40 H 0.082 0.918 41 H 0.130 0.870 42 H 0.132 0.868 43 H 0.141 0.859 44 H 0.060 0.940 45 H 0.123 0.877 46 H 0.071 0.929 47 H 0.118 0.882 48 H 0.092 0.908 49 H 0.175 0.825 50 H 0.156 0.844 51 H 0.147 0.853 52 H 0.124 0.876 53 H 0.261 0.739 54 H -0.252 1.252 55 H -0.220 1.220 Dipole moment (debyes) X Y Z Total from point charges 6.141 -6.644 4.009 9.896 hybrid contribution -0.526 0.942 -0.894 1.401 sum 5.615 -5.702 3.116 8.588 Atomic orbital electron populations 1.22117 0.96430 1.01035 1.02609 1.21535 0.95378 0.94042 1.03542 1.21487 0.98619 0.97379 0.93660 1.22108 0.92478 1.02757 1.04377 1.21773 0.78208 0.94484 1.03254 1.20918 0.82566 0.91536 0.75827 1.90805 1.63117 1.38109 1.47369 1.45608 1.07080 1.07190 1.74048 1.21252 0.97146 0.83739 0.91473 1.24339 0.79037 0.84671 0.81618 1.90647 1.53223 1.33775 1.64840 1.87114 1.36810 1.52728 1.46775 1.23398 1.02570 0.92190 0.88974 1.23591 0.89639 1.06507 0.95354 1.22916 0.94647 0.85009 0.95048 0.87418 1.87824 1.86576 1.26711 1.27932 1.23012 0.99555 1.03602 0.80832 1.23953 1.01054 1.01282 0.92837 1.43630 1.05531 1.43511 1.15040 1.21645 0.89930 1.02542 0.96736 1.20903 0.97055 1.08464 0.97927 1.20664 0.95576 1.08872 1.00101 1.20133 0.90656 1.06816 0.91103 1.24409 0.91260 1.00649 0.99096 1.86333 1.26361 1.70979 1.53345 0.95130 0.76631 0.78032 0.79540 0.93900 0.93037 0.92016 0.90440 0.90240 0.91594 0.90235 0.89610 0.92506 0.82407 0.73567 0.92846 0.91840 0.87016 0.86845 0.85894 0.94019 0.87705 0.92865 0.88226 0.90776 0.82511 0.84409 0.85264 0.87558 0.73872 1.25154 1.21989 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -0.26 8.33 71.98 0.60 0.34 16 2 C -0.11 0.33 5.38 30.60 0.16 0.50 16 3 C -0.09 0.17 2.06 -10.79 -0.02 0.14 16 4 C -0.16 0.96 7.68 71.98 0.55 1.51 16 5 C 0.13 0.19 1.90 44.24 0.08 0.27 16 6 C 0.51 2.77 6.01 87.66 0.53 3.30 16 7 O -0.52 -7.23 11.93 21.26 0.25 -6.97 16 8 N -0.68 -0.19 3.34 -423.93 -1.41 -1.60 16 9 C 0.15 0.43 1.13 3.39 0.00 0.44 16 10 C 0.46 4.51 7.07 71.24 0.50 5.01 16 11 O -0.53 -7.17 15.79 21.97 0.35 -6.82 16 12 O -0.32 -3.62 6.20 -43.34 -0.27 -3.89 16 13 C 0.02 0.16 10.56 113.37 1.20 1.36 16 14 C -0.11 0.34 7.06 31.12 0.22 0.56 16 15 C 0.08 -0.32 4.38 31.22 0.14 -0.18 16 16 H 0.11 -0.77 7.87 -2.39 -0.02 -0.79 16 17 O -0.37 1.66 10.01 -148.98 -1.49 0.17 16 18 C 0.03 -0.21 10.85 113.37 1.23 1.02 16 19 C -0.15 -0.34 7.27 31.22 0.23 -0.11 16 20 N -0.40 -2.54 1.11 -491.50 -0.55 -3.09 16 21 C 0.02 0.21 7.30 83.21 0.61 0.81 16 22 C -0.22 -2.36 10.86 22.14 0.24 -2.12 16 23 C -0.23 -2.37 9.31 22.14 0.21 -2.17 16 24 C 0.02 0.17 4.14 41.08 0.17 0.34 16 25 C -0.04 0.06 2.92 71.24 0.21 0.27 16 26 O -0.56 2.52 9.93 -148.98 -1.48 1.04 16 27 Si 0.80 -0.31 31.24 68.60 2.14 1.84 16 28 H 0.04 0.19 6.92 -2.39 -0.02 0.17 16 29 H 0.05 0.06 8.14 -2.39 -0.02 0.04 16 30 H 0.06 0.25 4.31 -2.39 -0.01 0.24 16 31 H 0.08 -0.34 8.13 -2.39 -0.02 -0.36 16 32 H 0.08 -0.44 8.09 -2.39 -0.02 -0.46 16 33 H 0.07 0.13 7.19 -2.39 -0.02 0.11 16 34 H 0.08 -0.55 8.14 -2.39 -0.02 -0.57 16 35 H 0.09 -0.87 7.59 -2.39 -0.02 -0.89 16 36 H 0.06 -0.19 6.03 -2.39 -0.01 -0.21 16 37 H 0.16 -0.28 5.43 -2.38 -0.01 -0.29 16 38 H 0.42 -2.07 6.37 -92.71 -0.59 -2.66 16 39 H 0.05 0.43 8.13 -2.39 -0.02 0.41 16 40 H 0.06 0.35 8.13 -2.39 -0.02 0.33 16 41 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 42 H 0.11 -0.77 8.11 -2.39 -0.02 -0.79 16 43 H 0.12 -0.26 7.38 -2.39 -0.02 -0.28 16 44 H 0.04 -0.31 8.14 -2.39 -0.02 -0.33 16 45 H 0.10 -1.16 8.14 -2.39 -0.02 -1.18 16 46 H 0.05 -0.51 8.14 -2.39 -0.02 -0.53 16 47 H 0.10 0.29 8.09 -2.39 -0.02 0.27 16 48 H 0.07 0.45 8.14 -2.39 -0.02 0.43 16 49 H 0.16 1.29 7.74 -2.92 -0.02 1.27 16 50 H 0.14 1.20 8.06 -2.91 -0.02 1.17 16 51 H 0.13 1.29 6.74 -2.91 -0.02 1.27 16 52 H 0.11 -0.72 7.96 -2.39 -0.02 -0.74 16 53 H 0.41 -6.29 8.74 -74.06 -0.65 -6.94 16 54 H -0.32 -3.57 7.11 99.48 0.71 -2.86 16 55 H -0.29 -1.61 6.90 99.48 0.69 -0.93 16 Total: 0.00 -26.82 421.77 4.09 -22.72 By element: Atomic # 1 Polarization: -14.39 SS G_CDS: -0.31 Total: -14.70 kcal Atomic # 6 Polarization: 4.45 SS G_CDS: 6.86 Total: 11.30 kcal Atomic # 7 Polarization: -2.73 SS G_CDS: -1.96 Total: -4.69 kcal Atomic # 8 Polarization: -13.84 SS G_CDS: -2.64 Total: -16.47 kcal Atomic # 14 Polarization: -0.31 SS G_CDS: 2.14 Total: 1.84 kcal Total: -26.82 4.09 -22.72 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12360566.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.120 kcal (2) G-P(sol) polarization free energy of solvation -26.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -82.936 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.093 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -22.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.843 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds