Wall clock time and date at job start Sun Mar 7 2021 00:14:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34228 * 116.99454 * 2 1 4 4 O 1.20819 * 120.00406 * 0.02562 * 3 2 1 5 5 C 1.50704 * 119.99453 * 180.02562 * 3 2 1 6 6 N 1.46503 * 112.85048 * 334.66288 * 5 3 2 7 7 C 1.34778 * 119.99780 * 50.34035 * 6 5 3 8 8 O 1.21571 * 119.99927 * 359.97438 * 7 6 5 9 9 C 1.47692 * 120.00049 * 179.97438 * 7 6 5 10 10 C 1.39808 * 120.15446 * 180.20578 * 9 7 6 11 11 F 1.35092 * 120.08699 * 0.02562 * 10 9 7 12 12 C 1.38317 * 119.82806 * 180.26945 * 10 9 7 13 13 C 1.38189 * 120.14343 * 359.77459 * 12 10 9 14 14 C 1.50699 * 119.83638 * 179.97438 * 13 12 10 15 15 O 1.42896 * 109.47113 * 254.97378 * 14 13 12 16 16 Si 1.86300 * 109.47425 * 14.97652 * 14 13 12 17 17 C 1.38652 * 120.31886 * 359.97438 * 13 12 10 18 18 F 1.35101 * 119.91806 * 180.02562 * 17 13 12 19 19 C 1.38072 * 120.16551 * 0.02562 * 17 13 12 20 20 C 1.53781 * 113.61347 * 203.47115 * 5 3 2 21 21 C 1.53778 * 87.08403 * 270.80012 * 20 5 3 22 22 H 1.08999 * 113.61798 * 89.11134 * 21 20 5 23 23 O 1.42899 * 113.61558 * 219.93502 * 21 20 5 24 24 C 1.42902 * 113.99957 * 209.99527 * 23 21 20 25 25 C 1.53778 * 113.61690 * 105.86603 * 5 3 2 26 26 H 1.09004 * 109.46935 * 299.99299 * 1 2 3 27 27 H 1.08996 * 109.47657 * 59.99847 * 1 2 3 28 28 H 1.09008 * 109.46641 * 180.02562 * 1 2 3 29 29 H 0.96996 * 120.00152 * 230.33015 * 6 5 3 30 30 H 1.07993 * 119.92663 * 179.74603 * 12 10 9 31 31 H 1.09000 * 109.46716 * 134.97890 * 14 13 12 32 32 H 0.96705 * 114.00074 * 60.00607 * 15 14 13 33 33 H 1.48505 * 109.99808 * 58.68178 * 16 14 13 34 34 H 1.48503 * 109.99996 * 179.97438 * 16 14 13 35 35 H 1.08002 * 120.07124 * 179.97438 * 19 17 13 36 36 H 1.09007 * 113.61279 * 25.34535 * 20 5 3 37 37 H 1.09000 * 113.61797 * 156.25105 * 20 5 3 38 38 H 1.08994 * 109.46844 * 180.02562 * 24 23 21 39 39 H 1.09001 * 109.47329 * 299.99983 * 24 23 21 40 40 H 1.08999 * 109.47121 * 59.99652 * 24 23 21 41 41 H 1.08999 * 113.61661 * 203.74914 * 25 5 3 42 42 H 1.09002 * 113.61331 * 334.64881 * 25 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 0.0005 5 6 3.5663 1.2749 -0.0006 6 7 4.1985 0.0861 0.5767 7 6 3.8373 -1.1417 0.1539 8 8 2.9865 -1.2625 -0.7060 9 6 4.4750 -2.3402 0.7354 10 6 4.1058 -3.6152 0.2963 11 9 3.1643 -3.7550 -0.6624 12 6 4.7034 -4.7332 0.8495 13 6 5.6663 -4.5916 1.8305 14 6 6.3125 -5.8145 2.4288 15 8 5.7864 -6.0387 3.7383 16 14 5.9558 -7.2941 1.3544 17 6 6.0408 -3.3299 2.2668 18 9 6.9834 -3.2009 3.2259 19 6 5.4527 -2.2050 1.7235 20 6 4.1140 2.5977 0.5607 21 6 4.0335 3.1483 -0.8729 22 1 3.0727 3.6040 -1.1124 23 8 5.1438 3.9730 -1.2325 24 6 4.8277 4.9903 -2.1851 25 6 4.1608 1.6921 -1.3560 26 1 -0.3633 0.5137 0.8901 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0278 0.0005 29 1 4.8771 0.1825 1.2630 30 1 4.4165 -5.7189 0.5143 31 1 7.3900 -5.6621 2.4914 32 1 4.8303 -6.1824 3.7588 33 1 6.4701 -7.0602 -0.0190 34 1 6.5883 -8.5065 1.9335 35 1 5.7452 -1.2230 2.0648 36 1 3.4353 3.0911 1.2566 37 1 5.1320 2.5218 0.9427 38 1 5.7226 5.5720 -2.4057 39 1 4.4600 4.5285 -3.1014 40 1 4.0595 5.6459 -1.7751 41 1 5.1916 1.3680 -1.4991 42 1 3.5199 1.4553 -2.2054 There are 65 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 65 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12360598.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:26 Heat of formation + Delta-G solvation = -200.114570 kcal Electronic energy + Delta-G solvation = -33235.388432 eV Core-core repulsion = 28206.875333 eV Total energy + Delta-G solvation = -5028.513098 eV No. of doubly occupied orbitals = 65 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 358.115 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -50.08659 -50.04067 -42.64449 -41.01831 -40.17024 -39.63018 -37.80889 -37.63553 -37.06165 -34.66062 -33.00546 -31.33764 -29.34540 -28.10752 -27.65567 -27.17211 -25.95348 -24.35926 -24.04587 -23.05404 -21.77091 -20.83208 -19.78246 -19.32237 -18.74887 -18.36436 -18.04645 -17.83708 -17.70844 -17.38804 -17.19226 -16.96241 -16.83540 -16.49023 -16.16383 -16.06769 -15.89718 -15.65580 -15.52781 -15.30277 -15.16225 -14.92354 -14.53624 -14.49874 -14.18307 -13.78254 -13.75109 -13.62176 -13.33592 -13.12594 -13.06227 -12.95426 -12.55958 -12.34183 -12.28234 -12.18520 -12.15942 -11.84043 -11.67192 -11.06377 -10.63761 -10.59291 -10.53830 -10.36443 -9.79658 -5.04157 -0.77229 -0.27443 0.81906 1.17601 1.43141 1.56340 1.63013 1.67201 1.95130 2.28375 2.75060 2.81645 2.85486 2.95186 3.14174 3.17943 3.32714 3.44124 3.52838 3.57246 3.60309 3.82856 3.97555 4.18510 4.18990 4.24996 4.34067 4.36525 4.40042 4.44459 4.50811 4.52725 4.57862 4.62434 4.65503 4.70023 4.72582 4.74620 4.78133 4.85626 5.08226 5.26983 5.41158 6.11920 6.23674 6.52912 6.69854 6.99369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 O -0.323 6.323 3 C 0.471 3.529 4 O -0.525 6.525 5 C 0.156 3.844 6 N -0.695 5.695 7 C 0.554 3.446 8 O -0.506 6.506 9 C -0.142 4.142 10 C 0.145 3.855 11 F -0.119 7.119 12 C -0.121 4.121 13 C -0.098 4.098 14 C -0.078 4.078 15 O -0.547 6.547 16 Si 0.779 3.221 17 C 0.099 3.901 18 F -0.131 7.131 19 C -0.080 4.080 20 C -0.105 4.105 21 C 0.065 3.935 22 H 0.094 0.906 23 O -0.383 6.383 24 C 0.022 3.978 25 C -0.141 4.141 26 H 0.064 0.936 27 H 0.058 0.942 28 H 0.117 0.883 29 H 0.424 0.576 30 H 0.181 0.819 31 H 0.113 0.887 32 H 0.399 0.601 33 H -0.280 1.280 34 H -0.292 1.292 35 H 0.180 0.820 36 H 0.096 0.904 37 H 0.140 0.860 38 H 0.100 0.900 39 H 0.046 0.954 40 H 0.049 0.951 41 H 0.123 0.877 42 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.545 -0.637 1.574 1.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.237 6.237 3 C 0.314 3.686 4 O -0.414 6.414 5 C 0.067 3.933 6 N -0.353 5.353 7 C 0.340 3.660 8 O -0.381 6.381 9 C -0.147 4.147 10 C 0.124 3.876 11 F -0.098 7.098 12 C -0.139 4.139 13 C -0.099 4.099 14 C -0.187 4.187 15 O -0.355 6.355 16 Si 0.683 3.317 17 C 0.079 3.921 18 F -0.109 7.109 19 C -0.099 4.099 20 C -0.143 4.143 21 C 0.006 3.994 22 H 0.112 0.888 23 O -0.302 6.302 24 C -0.074 4.074 25 C -0.180 4.180 26 H 0.083 0.917 27 H 0.077 0.923 28 H 0.135 0.865 29 H 0.264 0.736 30 H 0.197 0.803 31 H 0.131 0.869 32 H 0.250 0.750 33 H -0.206 1.206 34 H -0.220 1.220 35 H 0.197 0.803 36 H 0.114 0.886 37 H 0.158 0.842 38 H 0.119 0.881 39 H 0.064 0.936 40 H 0.068 0.932 41 H 0.141 0.859 42 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 0.812 -1.022 0.709 1.486 hybrid contribution 0.085 0.662 0.182 0.692 sum 0.897 -0.360 0.891 1.314 Atomic orbital electron populations 1.23487 0.76308 1.04971 1.02219 1.87003 1.23603 1.31057 1.82060 1.23541 0.91324 0.81994 0.71774 1.90673 1.66822 1.37136 1.46792 1.20995 0.85277 0.87534 0.99508 1.45539 1.43180 1.03146 1.43395 1.18064 0.82029 0.83275 0.82587 1.90919 1.30452 1.86004 1.30725 1.19742 1.01283 0.92406 1.01232 1.17736 0.88666 0.92941 0.88253 1.91617 1.61499 1.96362 1.60278 1.20984 0.96774 0.99151 0.96976 1.20558 0.97243 0.95370 0.96778 1.25264 1.00588 1.01275 0.91591 1.86556 1.29705 1.93859 1.25389 0.93815 0.89935 0.73425 0.74515 1.17406 0.90902 0.93558 0.90240 1.91565 1.61909 1.96604 1.60851 1.21356 0.94040 1.00153 0.94348 1.23531 1.04477 0.89072 0.97224 1.23547 0.90726 0.89696 0.95418 0.88816 1.87885 1.33826 1.46353 1.62127 1.23000 1.02780 0.90234 0.91407 1.23964 1.03314 0.96052 0.94622 0.91714 0.92297 0.86451 0.73556 0.80265 0.86935 0.75033 1.20601 1.21965 0.80322 0.88572 0.84214 0.88127 0.93551 0.93197 0.85890 0.91151 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.08 10.56 113.37 1.20 1.28 16 2 O -0.32 -2.61 6.30 -43.41 -0.27 -2.88 16 3 C 0.47 3.25 6.98 71.24 0.50 3.75 16 4 O -0.52 -5.46 14.99 21.98 0.33 -5.13 16 5 C 0.16 0.07 1.22 3.38 0.00 0.08 16 6 N -0.70 2.10 5.27 -426.90 -2.25 -0.14 16 7 C 0.55 1.30 7.12 86.74 0.62 1.91 16 8 O -0.51 -4.93 11.86 20.19 0.24 -4.69 16 9 C -0.14 0.15 5.88 -20.06 -0.12 0.03 16 10 C 0.14 0.02 7.28 22.67 0.17 0.18 16 11 F -0.12 -0.63 15.55 44.97 0.70 0.07 16 12 C -0.12 0.57 8.62 22.28 0.19 0.77 16 13 C -0.10 0.37 5.27 -19.78 -0.10 0.26 16 14 C -0.08 0.29 2.44 71.24 0.17 0.46 16 15 O -0.55 1.49 12.88 -148.98 -1.92 -0.43 16 16 Si 0.78 -4.26 29.90 68.60 2.05 -2.21 16 17 C 0.10 -0.24 7.23 22.33 0.16 -0.08 16 18 F -0.13 -0.13 16.73 44.97 0.75 0.63 16 19 C -0.08 0.43 9.51 22.57 0.21 0.64 16 20 C -0.11 0.33 6.96 31.12 0.22 0.54 16 21 C 0.06 0.04 3.90 31.18 0.12 0.16 16 22 H 0.09 0.26 7.05 -2.39 -0.02 0.24 16 23 O -0.38 -0.70 10.72 -148.98 -1.60 -2.30 16 24 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 25 C -0.14 -0.10 7.30 31.18 0.23 0.12 16 26 H 0.06 0.15 8.13 -2.38 -0.02 0.13 16 27 H 0.06 0.24 8.13 -2.39 -0.02 0.22 16 28 H 0.12 -0.03 8.14 -2.38 -0.02 -0.05 16 29 H 0.42 -4.33 6.67 -92.71 -0.62 -4.95 16 30 H 0.18 -1.81 5.10 -2.91 -0.01 -1.82 16 31 H 0.11 -0.21 7.89 -2.39 -0.02 -0.23 16 32 H 0.40 -4.64 8.70 -74.05 -0.64 -5.29 16 33 H -0.28 0.15 7.11 99.48 0.71 0.85 16 34 H -0.29 -0.67 7.11 99.48 0.71 0.04 16 35 H 0.18 -2.13 6.41 -2.91 -0.02 -2.15 16 36 H 0.10 -0.23 7.85 -2.38 -0.02 -0.25 16 37 H 0.14 -1.14 8.13 -2.39 -0.02 -1.16 16 38 H 0.10 -0.41 8.14 -2.39 -0.02 -0.43 16 39 H 0.05 -0.10 8.14 -2.39 -0.02 -0.12 16 40 H 0.05 -0.12 8.14 -2.39 -0.02 -0.14 16 41 H 0.12 -0.16 8.14 -2.39 -0.02 -0.18 16 42 H 0.07 0.26 8.09 -2.39 -0.02 0.24 16 Total: 0.00 -23.54 362.39 2.72 -20.82 By element: Atomic # 1 Polarization: -14.93 SS G_CDS: -0.11 Total: -15.05 kcal Atomic # 6 Polarization: 6.51 SS G_CDS: 4.80 Total: 11.31 kcal Atomic # 7 Polarization: 2.10 SS G_CDS: -2.25 Total: -0.14 kcal Atomic # 8 Polarization: -12.21 SS G_CDS: -3.22 Total: -15.43 kcal Atomic # 9 Polarization: -0.75 SS G_CDS: 1.45 Total: 0.70 kcal Atomic # 14 Polarization: -4.26 SS G_CDS: 2.05 Total: -2.21 kcal Total: -23.54 2.72 -20.82 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12360598.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -179.296 kcal (2) G-P(sol) polarization free energy of solvation -23.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -202.832 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.717 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.819 kcal (6) G-S(sol) free energy of system = (1) + (5) -200.115 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds