Wall clock time and date at job start Sun Mar 7 2021 00:14:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34229 * 117.00396 * 2 1 4 4 O 1.20830 * 119.99778 * 359.97438 * 3 2 1 5 5 C 1.50701 * 120.00517 * 179.97438 * 3 2 1 6 6 N 1.46500 * 112.84686 * 24.69177 * 5 3 2 7 7 C 1.34776 * 120.00476 * 65.86148 * 6 5 3 8 8 O 1.21288 * 119.99272 * 4.99452 * 7 6 5 9 9 C 1.50697 * 120.00544 * 184.98731 * 7 6 5 10 10 N 1.46497 * 109.47363 * 180.02562 * 9 7 6 11 11 C 1.35037 * 125.93330 * 125.00052 * 10 9 7 12 12 C 1.35081 * 107.98339 * 179.97438 * 11 10 9 13 13 C 1.50698 * 126.07596 * 180.02562 * 12 11 10 14 14 O 1.42905 * 109.46844 * 104.22448 * 13 12 11 15 15 Si 1.86298 * 109.47233 * 344.22559 * 13 12 11 16 16 C 1.40850 * 107.84782 * 0.02562 * 12 11 10 17 17 C 1.48419 * 126.03562 * 179.97438 * 16 12 11 18 18 C 1.39317 * 120.12242 * 319.50060 * 17 16 12 19 19 C 1.38021 * 119.88036 * 179.72065 * 18 17 16 20 20 C 1.38314 * 120.11826 * 0.53389 * 19 18 17 21 21 C 1.38327 * 120.24283 * 359.76771 * 20 19 18 22 22 C 1.38019 * 120.11614 * 359.94758 * 21 20 19 23 23 N 1.31620 * 107.92254 * 359.75729 * 16 12 11 24 24 C 1.53777 * 113.68945 * 253.42462 * 5 3 2 25 25 C 1.53960 * 87.10800 * 220.07439 * 24 5 3 26 26 H 1.09000 * 113.66118 * 139.88995 * 25 24 5 27 27 O 1.42895 * 113.61402 * 270.83970 * 25 24 5 28 28 C 1.42897 * 114.00393 * 247.42379 * 27 25 24 29 29 C 1.53773 * 113.61483 * 155.88575 * 5 3 2 30 30 H 1.08994 * 109.47044 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.46899 * 300.00212 * 1 2 3 32 32 H 1.09002 * 109.46904 * 59.99771 * 1 2 3 33 33 H 0.97006 * 120.00038 * 245.86622 * 6 5 3 34 34 H 1.08994 * 109.47209 * 300.00772 * 9 7 6 35 35 H 1.09008 * 109.46608 * 60.00839 * 9 7 6 36 36 H 1.08003 * 126.00675 * 359.94262 * 11 10 9 37 37 H 1.08995 * 109.47210 * 224.22441 * 13 12 11 38 38 H 0.96706 * 113.99983 * 179.97438 * 14 13 12 39 39 H 1.48503 * 110.00227 * 59.99862 * 15 13 12 40 40 H 1.48500 * 109.99921 * 181.31703 * 15 13 12 41 41 H 1.08003 * 120.06045 * 359.97438 * 18 17 16 42 42 H 1.08001 * 119.94177 * 180.27566 * 19 18 17 43 43 H 1.08001 * 119.88512 * 179.74077 * 20 19 18 44 44 H 1.07997 * 119.93790 * 179.97438 * 21 20 19 45 45 H 1.07999 * 120.06126 * 180.02562 * 22 21 20 46 46 H 1.08996 * 113.61824 * 334.55125 * 24 5 3 47 47 H 1.09003 * 113.61228 * 105.46122 * 24 5 3 48 48 H 1.08998 * 109.46981 * 59.99944 * 28 27 25 49 49 H 1.09002 * 109.47237 * 180.02562 * 28 27 25 50 50 H 1.09003 * 109.47203 * 300.00034 * 28 27 25 51 51 H 1.09002 * 113.61571 * 254.61379 * 29 5 3 52 52 H 1.09002 * 113.62094 * 25.43558 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1959 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2748 0.0006 6 7 4.1989 0.0796 -0.5629 7 6 4.0366 -0.2174 -1.8675 8 8 3.4435 0.5508 -2.5949 9 6 4.5920 -1.5037 -2.4223 10 7 4.2865 -1.5909 -3.8524 11 6 5.1834 -1.7779 -4.8444 12 6 4.5109 -1.8017 -6.0157 13 6 5.1164 -1.9883 -7.3830 14 8 4.8593 -3.3175 -7.8404 15 14 6.9559 -1.7081 -7.2911 16 6 3.1431 -1.6212 -5.7319 17 6 2.0428 -1.5805 -6.7272 18 6 2.2192 -0.9136 -7.9375 19 6 1.1947 -0.8838 -8.8619 20 6 -0.0093 -1.5052 -8.5838 21 6 -0.1921 -2.1635 -7.3810 22 6 0.8278 -2.2044 -6.4520 23 7 3.0126 -1.4997 -4.4278 24 6 4.1618 1.7086 1.3504 25 6 5.1654 2.5558 0.5470 26 1 5.3659 3.5320 0.9884 27 8 6.3566 1.8499 0.1937 28 6 7.5331 2.3321 0.8457 29 6 4.1145 2.5912 -0.5751 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5139 0.8900 32 1 -0.3633 0.5139 -0.8900 33 1 4.7345 -0.4983 0.0030 34 1 5.6724 -1.5242 -2.2800 35 1 4.1408 -2.3486 -1.9019 36 1 6.2508 -1.8884 -4.7228 37 1 4.6742 -1.2734 -8.0768 38 1 5.2209 -3.5088 -8.7167 39 1 7.5708 -2.6767 -6.3482 40 1 7.5605 -1.8579 -8.6391 41 1 3.1574 -0.4242 -8.1539 42 1 1.3319 -0.3709 -9.8024 43 1 -0.8099 -1.4759 -9.3081 44 1 -1.1343 -2.6466 -7.1688 45 1 0.6843 -2.7190 -5.5134 46 1 3.4792 2.3026 1.9581 47 1 4.6242 0.8928 1.9060 48 1 7.4135 2.2410 1.9252 49 1 8.3933 1.7449 0.5242 50 1 7.6901 3.3787 0.5846 51 1 4.5386 2.4879 -1.5739 52 1 3.4184 3.4262 -0.4952 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12622748.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:36 Heat of formation + Delta-G solvation = -33.941276 kcal Electronic energy + Delta-G solvation = -39314.285821 eV Core-core repulsion = 34249.743388 eV Total energy + Delta-G solvation = -5064.542433 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 402.172 amu Computer time = 1.56 seconds Orbital eigenvalues (eV) -42.63952 -42.34091 -40.73087 -39.95413 -39.62668 -37.79420 -37.76539 -37.00389 -34.89358 -34.16749 -32.40933 -31.94958 -31.46199 -29.61019 -28.70962 -27.69591 -27.10690 -26.45036 -25.85810 -24.22802 -23.47161 -22.82437 -22.06240 -21.52097 -20.87049 -20.54317 -19.29734 -18.63586 -18.46155 -18.29020 -18.22373 -17.56763 -17.45446 -17.21757 -16.81678 -16.63873 -16.23447 -16.04125 -15.99029 -15.67156 -15.63832 -15.45038 -15.17009 -14.86234 -14.76663 -14.50860 -14.42589 -14.32522 -14.19674 -13.81692 -13.72705 -13.59518 -13.52751 -13.39744 -13.29905 -13.07380 -12.69745 -12.56593 -12.34480 -12.19938 -12.16249 -12.06172 -11.98534 -11.95781 -11.66536 -11.55426 -11.23878 -10.65946 -10.59941 -10.29087 -10.23406 -9.89051 -9.79759 -9.30115 -4.85002 0.08915 0.44562 0.77876 0.88453 1.23167 1.33683 1.38401 1.64447 1.66905 1.68808 1.91852 1.98995 2.59798 2.87891 3.15681 3.20859 3.26637 3.46408 3.48862 3.61020 3.72765 3.78305 3.89836 3.93631 4.04152 4.11145 4.11603 4.13477 4.15457 4.20168 4.24733 4.34866 4.45244 4.51415 4.51734 4.53796 4.55870 4.58407 4.63764 4.70515 4.75232 4.76409 4.83604 4.88048 4.97411 4.98323 5.09850 5.19514 5.21573 5.27847 5.54831 5.55309 5.59615 5.87885 6.02054 6.22376 6.36728 6.50684 6.58094 6.71207 7.09111 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.357 6.357 3 C 0.465 3.535 4 O -0.533 6.533 5 C 0.159 3.841 6 N -0.676 5.676 7 C 0.505 3.495 8 O -0.552 6.552 9 C 0.114 3.886 10 N -0.358 5.358 11 C 0.074 3.926 12 C -0.225 4.225 13 C -0.054 4.054 14 O -0.558 6.558 15 Si 0.766 3.234 16 C 0.108 3.892 17 C -0.027 4.027 18 C -0.106 4.106 19 C -0.122 4.122 20 C -0.120 4.120 21 C -0.127 4.127 22 C -0.115 4.115 23 N -0.291 5.291 24 C -0.127 4.127 25 C 0.080 3.920 26 H 0.108 0.892 27 O -0.375 6.375 28 C 0.024 3.976 29 C -0.130 4.130 30 H 0.127 0.873 31 H 0.070 0.930 32 H 0.045 0.955 33 H 0.428 0.572 34 H 0.180 0.820 35 H 0.140 0.860 36 H 0.214 0.786 37 H 0.077 0.923 38 H 0.389 0.611 39 H -0.274 1.274 40 H -0.284 1.284 41 H 0.138 0.862 42 H 0.151 0.849 43 H 0.148 0.852 44 H 0.140 0.860 45 H 0.111 0.889 46 H 0.118 0.882 47 H 0.122 0.878 48 H 0.057 0.943 49 H 0.098 0.902 50 H 0.045 0.955 51 H 0.073 0.927 52 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.066 -0.425 4.943 9.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 O -0.272 6.272 3 C 0.308 3.692 4 O -0.422 6.422 5 C 0.069 3.931 6 N -0.333 5.333 7 C 0.291 3.709 8 O -0.428 6.428 9 C -0.010 4.010 10 N -0.140 5.140 11 C -0.071 4.071 12 C -0.236 4.236 13 C -0.162 4.162 14 O -0.367 6.367 15 Si 0.668 3.332 16 C -0.058 4.058 17 C -0.028 4.028 18 C -0.125 4.125 19 C -0.139 4.139 20 C -0.138 4.138 21 C -0.145 4.145 22 C -0.135 4.135 23 N -0.112 5.112 24 C -0.164 4.164 25 C 0.022 3.978 26 H 0.125 0.875 27 O -0.293 6.293 28 C -0.072 4.072 29 C -0.168 4.168 30 H 0.145 0.855 31 H 0.089 0.911 32 H 0.064 0.936 33 H 0.268 0.732 34 H 0.197 0.803 35 H 0.158 0.842 36 H 0.231 0.769 37 H 0.095 0.905 38 H 0.238 0.762 39 H -0.200 1.200 40 H -0.211 1.211 41 H 0.155 0.845 42 H 0.169 0.831 43 H 0.165 0.835 44 H 0.158 0.842 45 H 0.130 0.870 46 H 0.137 0.863 47 H 0.140 0.860 48 H 0.075 0.925 49 H 0.117 0.883 50 H 0.063 0.937 51 H 0.092 0.908 52 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 7.141 0.028 5.929 9.282 hybrid contribution -0.459 -0.931 -1.105 1.516 sum 6.682 -0.903 4.824 8.291 Atomic orbital electron populations 1.23462 0.75377 1.05397 1.02064 1.86499 1.24464 1.33085 1.83178 1.24467 0.92613 0.81338 0.70829 1.90654 1.67227 1.37431 1.46883 1.21214 0.82704 0.88768 1.00417 1.45137 1.52783 1.25788 1.09546 1.21042 0.79516 0.88170 0.82175 1.90834 1.42030 1.50907 1.59036 1.21925 1.06287 0.96598 0.76172 1.48058 1.03994 1.55339 1.06576 1.22753 0.97822 0.99825 0.86698 1.19594 0.91976 1.16652 0.95358 1.24492 1.12887 0.86029 0.92820 1.86603 1.80158 1.30397 1.39534 0.94234 0.70813 0.88393 0.79712 1.20881 0.93855 0.99937 0.91088 1.18010 0.91706 0.99954 0.93173 1.21374 1.00267 0.98449 0.92453 1.21426 0.92963 0.99554 0.99998 1.21588 0.98252 0.96809 0.97136 1.21352 0.99136 0.99890 0.94138 1.21264 0.93018 0.99603 0.99581 1.77700 1.01777 1.23581 1.08139 1.23852 0.98048 1.02100 0.92449 1.22918 0.84895 0.96128 0.93881 0.87468 1.87869 1.15342 1.57970 1.68120 1.23023 0.86793 0.99837 0.97530 1.23555 0.97793 0.94981 1.00510 0.85484 0.91082 0.93595 0.73180 0.80283 0.84201 0.76913 0.90471 0.76155 1.20028 1.21080 0.84478 0.83109 0.83464 0.84176 0.87038 0.86349 0.86023 0.92471 0.88329 0.93664 0.90845 0.87730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.15 10.56 113.37 1.20 1.35 16 2 O -0.36 -2.95 10.24 -51.40 -0.53 -3.48 16 3 C 0.46 4.43 6.58 71.24 0.47 4.90 16 4 O -0.53 -8.20 15.80 21.95 0.35 -7.85 16 5 C 0.16 0.31 1.01 3.38 0.00 0.32 16 6 N -0.68 1.38 4.44 -423.94 -1.88 -0.50 16 7 C 0.51 1.87 7.37 87.66 0.65 2.52 16 8 O -0.55 -8.43 14.26 -3.05 -0.04 -8.47 16 9 C 0.11 -0.37 6.99 85.63 0.60 0.23 16 10 N -0.36 -2.17 3.40 -351.92 -1.20 -3.37 16 11 C 0.07 0.24 9.96 83.47 0.83 1.07 16 12 C -0.22 -1.76 5.37 -19.95 -0.11 -1.87 16 13 C -0.05 -0.17 2.48 71.24 0.18 0.01 16 14 O -0.56 -3.30 12.86 -148.98 -1.92 -5.22 16 15 Si 0.77 -1.62 30.80 68.60 2.11 0.50 16 16 C 0.11 1.47 6.69 42.53 0.28 1.75 16 17 C -0.03 -0.34 5.76 -20.04 -0.12 -0.46 16 18 C -0.11 -0.87 8.90 22.48 0.20 -0.67 16 19 C -0.12 -0.58 10.03 22.24 0.22 -0.36 16 20 C -0.12 -0.58 10.04 22.31 0.22 -0.35 16 21 C -0.13 -0.96 10.03 22.24 0.22 -0.73 16 22 C -0.12 -1.41 9.77 22.48 0.22 -1.19 16 23 N -0.29 -4.31 11.68 -48.15 -0.56 -4.88 16 24 C -0.13 0.69 7.20 31.18 0.22 0.92 16 25 C 0.08 -0.33 4.38 31.18 0.14 -0.19 16 26 H 0.11 -0.77 7.87 -2.39 -0.02 -0.79 16 27 O -0.37 1.61 10.14 -148.98 -1.51 0.10 16 28 C 0.02 -0.21 10.85 113.37 1.23 1.02 16 29 C -0.13 -0.45 6.67 31.12 0.21 -0.25 16 30 H 0.13 -0.11 8.14 -2.39 -0.02 -0.13 16 31 H 0.07 0.22 8.13 -2.39 -0.02 0.20 16 32 H 0.05 0.39 8.13 -2.39 -0.02 0.37 16 33 H 0.43 -4.24 8.66 -92.70 -0.80 -5.05 16 34 H 0.18 -2.45 8.07 -2.39 -0.02 -2.47 16 35 H 0.14 -1.01 8.14 -2.38 -0.02 -1.03 16 36 H 0.21 -1.19 6.37 -2.91 -0.02 -1.20 16 37 H 0.08 0.10 5.37 -2.39 -0.01 0.08 16 38 H 0.39 -0.94 8.74 -74.05 -0.65 -1.58 16 39 H -0.27 -0.34 7.03 99.48 0.70 0.36 16 40 H -0.28 -0.57 7.11 99.48 0.71 0.14 16 41 H 0.14 0.63 5.97 -2.91 -0.02 0.61 16 42 H 0.15 -0.16 8.06 -2.91 -0.02 -0.18 16 43 H 0.15 -0.10 8.06 -2.91 -0.02 -0.12 16 44 H 0.14 0.43 8.06 -2.91 -0.02 0.40 16 45 H 0.11 1.44 8.06 -2.91 -0.02 1.42 16 46 H 0.12 -0.69 8.10 -2.39 -0.02 -0.71 16 47 H 0.12 -1.26 8.09 -2.39 -0.02 -1.28 16 48 H 0.06 -0.61 8.14 -2.39 -0.02 -0.63 16 49 H 0.10 -1.01 8.14 -2.39 -0.02 -1.03 16 50 H 0.04 -0.37 8.14 -2.39 -0.02 -0.39 16 51 H 0.07 0.61 7.20 -2.39 -0.02 0.60 16 52 H 0.10 0.60 7.38 -2.39 -0.02 0.58 16 Total: 0.00 -38.25 439.41 1.26 -36.99 By element: Atomic # 1 Polarization: -11.39 SS G_CDS: -0.43 Total: -11.83 kcal Atomic # 6 Polarization: 1.13 SS G_CDS: 6.87 Total: 8.00 kcal Atomic # 7 Polarization: -5.10 SS G_CDS: -3.64 Total: -8.74 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -3.65 Total: -24.92 kcal Atomic # 14 Polarization: -1.62 SS G_CDS: 2.11 Total: 0.50 kcal Total: -38.25 1.26 -36.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12622748.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.051 kcal (2) G-P(sol) polarization free energy of solvation -38.254 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.204 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.262 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.992 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.941 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds