Wall clock time and date at job start Sun Mar 7 2021 00:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45199 * 1 3 3 C 1.34232 * 116.99962 * 2 1 4 4 O 1.20821 * 119.99883 * 0.02562 * 3 2 1 5 5 C 1.50693 * 119.99612 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.85478 * 324.06952 * 5 3 2 7 7 C 1.34778 * 119.99717 * 293.64893 * 6 5 3 8 8 O 1.21625 * 120.00045 * 354.95867 * 7 6 5 9 9 C 1.47286 * 119.99773 * 174.96747 * 7 6 5 10 10 C 1.40373 * 120.04496 * 179.71885 * 9 7 6 11 11 O 1.35668 * 120.13863 * 0.02562 * 10 9 7 12 12 C 1.38319 * 119.72441 * 179.78743 * 10 9 7 13 13 C 1.39567 * 119.81329 * 0.46549 * 12 10 9 14 14 C 1.47573 * 119.95732 * 179.74082 * 13 12 10 15 15 C 1.36106 * 125.94555 * 180.02562 * 14 13 12 16 16 C 1.40799 * 106.73223 * 179.97438 * 15 14 13 17 17 C 1.34837 * 107.04816 * 359.97438 * 16 15 14 18 18 C 1.50701 * 125.64714 * 180.02562 * 17 16 15 19 19 O 1.42897 * 109.47084 * 65.00646 * 18 17 16 20 20 Si 1.86305 * 109.46962 * 185.00124 * 18 17 16 21 21 O 1.34228 * 108.69700 * 359.75830 * 17 16 15 22 22 C 1.39966 * 120.08989 * 359.76265 * 13 12 10 23 23 C 1.36390 * 120.27476 * 0.02754 * 22 13 12 24 24 C 1.53784 * 113.61198 * 192.87193 * 5 3 2 25 25 C 1.53780 * 87.08164 * 270.80029 * 24 5 3 26 26 H 1.09001 * 113.61268 * 89.11942 * 25 24 5 27 27 O 1.42900 * 113.61478 * 219.93555 * 25 24 5 28 28 C 1.42900 * 114.00055 * 210.00364 * 27 25 24 29 29 C 1.53785 * 113.69065 * 95.33724 * 5 3 2 30 30 H 1.08999 * 109.47204 * 59.99722 * 1 2 3 31 31 H 1.08999 * 109.47493 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.47400 * 300.00020 * 1 2 3 33 33 H 0.96996 * 119.99750 * 113.63773 * 6 5 3 34 34 H 0.96708 * 114.00177 * 89.99668 * 11 10 9 35 35 H 1.08003 * 120.09371 * 180.25400 * 12 10 9 36 36 H 1.08003 * 126.63141 * 359.97438 * 15 14 13 37 37 H 1.07994 * 126.47207 * 179.97438 * 16 15 14 38 38 H 1.08997 * 109.47696 * 305.00241 * 18 17 16 39 39 H 0.96698 * 113.99816 * 179.97438 * 19 18 17 40 40 H 1.48490 * 110.00274 * 178.68273 * 20 18 17 41 41 H 1.48502 * 109.99814 * 300.00541 * 20 18 17 42 42 H 1.08002 * 119.86151 * 179.97438 * 22 13 12 43 43 H 1.08006 * 119.90243 * 179.97438 * 23 22 13 44 44 H 1.08999 * 113.61436 * 25.35330 * 24 5 3 45 45 H 1.09007 * 113.61118 * 156.17054 * 24 5 3 46 46 H 1.08997 * 109.47749 * 180.02562 * 28 27 25 47 47 H 1.09005 * 109.46812 * 300.00006 * 28 27 25 48 48 H 1.08996 * 109.47652 * 59.99646 * 28 27 25 49 49 H 1.08997 * 113.61350 * 203.66948 * 29 5 3 50 50 H 1.08992 * 113.61473 * 334.58110 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 0.0005 5 6 3.5663 1.2748 0.0006 6 7 4.1913 0.2130 0.7932 7 6 4.0225 0.1819 2.1300 8 8 3.4290 1.0842 2.6892 9 6 4.5568 -0.9449 2.9137 10 6 4.3867 -0.9755 4.3067 11 8 3.7296 0.0316 4.9350 12 6 4.8873 -2.0391 5.0356 13 6 5.5663 -3.0691 4.3830 14 6 6.1068 -4.2025 5.1583 15 6 6.7859 -5.2668 4.6497 16 6 7.1109 -6.0982 5.7386 17 6 6.6203 -5.5076 6.8471 18 6 6.7335 -6.0434 8.2510 19 8 8.1072 -6.0627 8.6442 20 14 5.7705 -4.9504 9.4124 21 8 6.0197 -4.3604 6.4935 22 6 5.7357 -3.0284 2.9942 23 6 5.2398 -1.9835 2.2714 24 6 4.1094 2.6789 0.3144 25 6 4.0444 2.9560 -1.1968 26 1 3.0866 3.3590 -1.5260 27 8 5.1592 3.7014 -1.6905 28 6 4.8541 4.5257 -2.8172 29 6 4.1770 1.4376 -1.4014 30 1 -0.3633 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 -0.3634 0.5139 0.8900 33 1 4.7265 -0.4675 0.3559 34 1 2.7763 -0.1100 5.0144 35 1 4.7562 -2.0707 6.1072 36 1 7.0287 -5.4400 3.6117 37 1 7.6509 -7.0323 5.6943 38 1 6.3309 -7.0557 8.2872 39 1 8.2553 -6.3966 9.5396 40 1 5.8478 -5.4858 10.7953 41 1 6.3096 -3.5672 9.3723 42 1 6.2621 -3.8272 2.4930 43 1 5.3743 -1.9579 1.2001 44 1 3.4242 3.2912 0.9006 45 1 5.1229 2.6753 0.7158 46 1 5.7518 5.0578 -3.1320 47 1 4.4953 3.9028 -3.6366 48 1 4.0824 5.2450 -2.5429 49 1 5.2094 1.0949 -1.4703 50 1 3.5463 1.0480 -2.2003 There are 74 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 74 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12807986.mol2 50 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:46 Heat of formation + Delta-G solvation = -141.397769 kcal Electronic energy + Delta-G solvation = -38299.012301 eV Core-core repulsion = 33034.372881 eV Total energy + Delta-G solvation = -5264.639420 eV No. of doubly occupied orbitals = 74 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 404.149 amu Computer time = 1.69 seconds Orbital eigenvalues (eV) -43.73211 -42.66274 -41.37505 -40.28274 -39.41369 -38.15031 -37.90225 -37.81416 -37.14380 -34.73586 -34.17671 -33.17669 -31.34472 -30.58101 -29.33229 -27.92991 -27.18947 -27.09495 -25.96377 -24.45734 -24.03378 -23.28327 -22.41582 -21.90679 -21.30311 -20.83410 -19.86364 -19.14351 -18.83319 -18.81786 -18.15234 -18.05052 -17.66037 -17.35215 -17.15034 -17.10162 -16.65030 -16.61249 -16.25768 -16.06145 -15.96484 -15.84582 -15.53521 -15.17559 -14.99173 -14.68670 -14.48719 -14.41361 -14.21063 -14.10792 -13.96713 -13.73151 -13.63488 -13.58236 -13.49514 -13.34298 -13.05898 -12.86383 -12.71556 -12.57408 -12.35654 -12.16691 -12.04629 -11.95662 -11.91741 -11.79805 -11.12706 -10.99005 -10.77394 -10.61406 -10.57325 -10.41587 -9.95598 -9.01099 -5.00869 -0.80902 0.14940 0.61412 0.79878 1.11398 1.32825 1.38930 1.48693 1.69657 1.75503 1.89624 1.91172 2.62223 2.77083 2.99501 3.02566 3.16778 3.24395 3.42185 3.47892 3.54980 3.62258 3.68747 3.81097 3.95652 4.00102 4.01830 4.18457 4.19936 4.21953 4.31791 4.39948 4.41544 4.47013 4.53302 4.54733 4.60905 4.65333 4.66697 4.70048 4.74780 4.78671 4.81087 4.86968 4.90261 5.06156 5.09187 5.11303 5.18752 5.22264 5.44702 5.53961 5.99271 6.13708 6.31174 6.47403 6.49115 6.67250 7.02978 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.350 6.350 3 C 0.476 3.524 4 O -0.522 6.522 5 C 0.157 3.843 6 N -0.689 5.689 7 C 0.561 3.439 8 O -0.552 6.552 9 C -0.178 4.178 10 C 0.162 3.838 11 O -0.496 6.496 12 C -0.155 4.155 13 C 0.028 3.972 14 C 0.002 3.998 15 C -0.169 4.169 16 C -0.181 4.181 17 C -0.017 4.017 18 C -0.037 4.037 19 O -0.554 6.554 20 Si 0.755 3.245 21 O -0.181 6.181 22 C -0.108 4.108 23 C -0.046 4.046 24 C -0.118 4.118 25 C 0.064 3.936 26 H 0.094 0.906 27 O -0.387 6.387 28 C 0.021 3.979 29 C -0.120 4.120 30 H 0.069 0.931 31 H 0.134 0.866 32 H 0.052 0.948 33 H 0.426 0.574 34 H 0.408 0.592 35 H 0.135 0.865 36 H 0.187 0.813 37 H 0.170 0.830 38 H 0.132 0.868 39 H 0.405 0.595 40 H -0.261 1.261 41 H -0.315 1.315 42 H 0.173 0.827 43 H 0.177 0.823 44 H 0.065 0.935 45 H 0.108 0.892 46 H 0.099 0.901 47 H 0.058 0.942 48 H 0.043 0.957 49 H 0.142 0.858 50 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.315 -9.920 -5.888 11.540 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.266 6.266 3 C 0.318 3.682 4 O -0.410 6.410 5 C 0.067 3.933 6 N -0.346 5.346 7 C 0.350 3.650 8 O -0.430 6.430 9 C -0.181 4.181 10 C 0.116 3.884 11 O -0.309 6.309 12 C -0.174 4.174 13 C 0.028 3.972 14 C -0.047 4.047 15 C -0.187 4.187 16 C -0.200 4.200 17 C -0.066 4.066 18 C -0.147 4.147 19 O -0.366 6.366 20 Si 0.660 3.340 21 O -0.079 6.079 22 C -0.125 4.125 23 C -0.065 4.065 24 C -0.156 4.156 25 C 0.005 3.995 26 H 0.112 0.888 27 O -0.305 6.305 28 C -0.075 4.075 29 C -0.158 4.158 30 H 0.088 0.912 31 H 0.152 0.848 32 H 0.071 0.929 33 H 0.267 0.733 34 H 0.268 0.732 35 H 0.153 0.847 36 H 0.204 0.796 37 H 0.187 0.813 38 H 0.150 0.850 39 H 0.258 0.742 40 H -0.186 1.186 41 H -0.244 1.244 42 H 0.191 0.809 43 H 0.195 0.805 44 H 0.084 0.916 45 H 0.126 0.874 46 H 0.117 0.883 47 H 0.076 0.924 48 H 0.062 0.938 49 H 0.160 0.840 50 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.324 -7.816 -5.053 9.313 hybrid contribution 0.112 -0.301 0.792 0.855 sum -0.212 -8.117 -4.261 9.170 Atomic orbital electron populations 1.23586 0.74650 1.05910 1.02441 1.86490 1.24902 1.32018 1.83176 1.23567 0.91430 0.81718 0.71471 1.90677 1.66950 1.37429 1.45955 1.20926 0.84848 0.90489 0.96998 1.45475 1.53131 1.30307 1.05720 1.18336 0.78953 0.85537 0.82164 1.90865 1.42704 1.38436 1.70957 1.20390 1.06979 0.97672 0.93097 1.18476 0.94308 0.86648 0.88957 1.84737 1.25941 1.41908 1.78328 1.21551 1.01462 0.93211 1.01171 1.17978 0.95885 0.90252 0.93111 1.20613 1.05457 0.98359 0.80278 1.22271 1.00898 0.93481 1.02074 1.21848 1.03799 1.03287 0.91076 1.21855 1.01417 0.86310 0.97055 1.23944 0.88950 1.07525 0.94236 1.86518 1.22945 1.88711 1.38443 0.93823 0.88318 0.74924 0.76964 1.83916 1.62442 1.37252 1.24241 1.21077 1.00586 1.00244 0.90626 1.21211 0.92916 0.90492 1.01838 1.23460 1.02499 0.92587 0.97067 1.23555 0.90630 0.91717 0.93608 0.88788 1.87913 1.33825 1.60095 1.48692 1.23023 1.02699 0.94032 0.87733 1.23834 1.04594 0.95897 0.91428 0.91245 0.84766 0.92908 0.73316 0.73232 0.84725 0.79583 0.81296 0.85038 0.74210 1.18595 1.24359 0.80919 0.80541 0.91650 0.87391 0.88290 0.92380 0.93802 0.84037 0.87542 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.00 10.56 113.37 1.20 1.19 16 2 O -0.35 -1.38 10.42 -51.43 -0.54 -1.91 16 3 C 0.48 3.43 6.44 71.23 0.46 3.89 16 4 O -0.52 -6.89 15.12 21.98 0.33 -6.56 16 5 C 0.16 0.34 1.11 3.38 0.00 0.34 16 6 N -0.69 0.79 5.07 -427.27 -2.17 -1.37 16 7 C 0.56 3.22 7.40 86.62 0.64 3.87 16 8 O -0.55 -8.11 14.18 16.89 0.24 -7.87 16 9 C -0.18 -0.41 5.89 -19.97 -0.12 -0.53 16 10 C 0.16 0.95 6.71 22.81 0.15 1.10 16 11 O -0.50 -4.35 11.56 -68.85 -0.80 -5.15 16 12 C -0.16 -0.67 9.65 22.61 0.22 -0.45 16 13 C 0.03 0.03 5.87 -20.08 -0.12 -0.09 16 14 C 0.00 0.01 7.02 24.24 0.17 0.18 16 15 C -0.17 0.14 10.26 22.40 0.23 0.37 16 16 C -0.18 -0.17 10.78 22.11 0.24 0.06 16 17 C -0.02 -0.05 6.24 24.90 0.16 0.10 16 18 C -0.04 0.05 2.97 71.24 0.21 0.27 16 19 O -0.55 -0.37 12.86 -148.98 -1.92 -2.29 16 20 Si 0.76 -0.25 32.11 68.60 2.20 1.96 16 21 O -0.18 -1.05 8.79 -6.01 -0.05 -1.10 16 22 C -0.11 0.57 9.49 22.26 0.21 0.78 16 23 C -0.05 0.26 9.46 22.24 0.21 0.47 16 24 C -0.12 -0.71 6.15 31.12 0.19 -0.52 16 25 C 0.06 0.14 3.92 31.12 0.12 0.26 16 26 H 0.09 0.31 7.35 -2.39 -0.02 0.29 16 27 O -0.39 -1.35 10.72 -148.98 -1.60 -2.95 16 28 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 29 C -0.12 0.48 7.22 31.12 0.22 0.71 16 30 H 0.07 -0.06 8.13 -2.39 -0.02 -0.08 16 31 H 0.13 -0.89 8.14 -2.39 -0.02 -0.91 16 32 H 0.05 0.13 8.13 -2.38 -0.02 0.11 16 33 H 0.43 -4.06 6.73 -92.71 -0.62 -4.68 16 34 H 0.41 0.71 9.06 -74.05 -0.67 0.04 16 35 H 0.13 0.66 7.90 -2.91 -0.02 0.64 16 36 H 0.19 -1.48 7.24 -2.91 -0.02 -1.50 16 37 H 0.17 -0.45 8.06 -2.91 -0.02 -0.47 16 38 H 0.13 -1.07 7.96 -2.39 -0.02 -1.09 16 39 H 0.41 -3.41 8.74 -74.06 -0.65 -4.06 16 40 H -0.26 -0.26 7.11 99.48 0.71 0.44 16 41 H -0.32 -3.33 7.11 99.48 0.71 -2.63 16 42 H 0.17 -2.08 6.95 -2.91 -0.02 -2.10 16 43 H 0.18 -2.52 6.39 -2.91 -0.02 -2.54 16 44 H 0.06 0.79 7.64 -2.39 -0.02 0.78 16 45 H 0.11 0.64 8.14 -2.38 -0.02 0.62 16 46 H 0.10 -0.35 8.14 -2.39 -0.02 -0.37 16 47 H 0.06 -0.25 8.14 -2.38 -0.02 -0.27 16 48 H 0.04 -0.05 8.14 -2.39 -0.02 -0.07 16 49 H 0.14 -1.19 8.14 -2.39 -0.02 -1.21 16 50 H 0.11 -0.75 8.09 -2.39 -0.02 -0.77 16 Total: 0.00 -34.35 430.25 0.48 -33.87 By element: Atomic # 1 Polarization: -18.96 SS G_CDS: -0.86 Total: -19.82 kcal Atomic # 6 Polarization: 7.57 SS G_CDS: 5.63 Total: 13.20 kcal Atomic # 7 Polarization: 0.79 SS G_CDS: -2.17 Total: -1.37 kcal Atomic # 8 Polarization: -23.50 SS G_CDS: -4.32 Total: -27.83 kcal Atomic # 14 Polarization: -0.25 SS G_CDS: 2.20 Total: 1.96 kcal Total: -34.35 0.48 -33.87 kcal The number of atoms in the molecule is 50 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12807986.mol2 50 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -107.526 kcal (2) G-P(sol) polarization free energy of solvation -34.350 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.876 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.478 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -33.872 kcal (6) G-S(sol) free energy of system = (1) + (5) -141.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.69 seconds