Wall clock time and date at job start Sun Mar 7 2021 00:14:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45201 * 1 3 3 C 1.34234 * 116.99625 * 2 1 4 4 O 1.20822 * 120.00173 * 359.97438 * 3 2 1 5 5 C 1.50699 * 119.99707 * 180.02562 * 3 2 1 6 6 N 1.46498 * 112.85211 * 325.03231 * 5 3 2 7 7 C 1.34777 * 120.00254 * 284.61904 * 6 5 3 8 8 O 1.21571 * 120.00298 * 5.10659 * 7 6 5 9 9 C 1.47673 * 119.99821 * 185.11669 * 7 6 5 10 10 C 1.40002 * 120.45677 * 3.84799 * 9 7 6 11 11 N 1.31303 * 121.37860 * 180.02562 * 10 9 7 12 12 C 1.32818 * 121.89254 * 359.97438 * 11 10 9 13 13 N 1.37156 * 132.97245 * 179.97438 * 12 11 10 14 14 C 1.36947 * 110.11720 * 180.02562 * 13 12 11 15 15 C 1.34177 * 109.94906 * 359.97438 * 14 13 12 16 16 C 1.50700 * 126.59636 * 179.97438 * 15 14 13 17 17 O 1.42893 * 109.47343 * 105.02673 * 16 15 14 18 18 Si 1.86303 * 109.47331 * 345.02243 * 16 15 14 19 19 C 1.41025 * 120.07738 * 359.72624 * 12 11 10 20 20 C 1.39278 * 119.62224 * 0.57107 * 19 12 11 21 21 C 1.50698 * 121.02975 * 179.71183 * 20 19 12 22 22 C 1.53788 * 113.61325 * 193.84219 * 5 3 2 23 23 C 1.53782 * 87.07894 * 270.79698 * 22 5 3 24 24 H 1.09004 * 113.60984 * 89.11505 * 23 22 5 25 25 O 1.42904 * 113.61463 * 220.01586 * 23 22 5 26 26 C 1.42890 * 113.99882 * 210.00155 * 25 23 22 27 27 C 1.53781 * 87.08385 * 334.56802 * 23 22 5 28 28 H 1.08997 * 109.47188 * 300.00264 * 1 2 3 29 29 H 1.09004 * 109.47129 * 60.00431 * 1 2 3 30 30 H 1.09006 * 109.46786 * 180.02562 * 1 2 3 31 31 H 0.97004 * 119.99658 * 104.60868 * 6 5 3 32 32 H 1.07999 * 119.31067 * 0.02562 * 10 9 7 33 33 H 0.97006 * 124.94013 * 0.05064 * 13 12 11 34 34 H 1.08001 * 125.02486 * 179.97438 * 14 13 12 35 35 H 1.09007 * 109.47045 * 225.02657 * 16 15 14 36 36 H 0.96701 * 114.00292 * 180.02562 * 17 16 15 37 37 H 1.48498 * 110.00131 * 298.68252 * 18 16 15 38 38 H 1.48503 * 109.99674 * 59.99776 * 18 16 15 39 39 H 1.09000 * 109.47053 * 263.17413 * 21 20 19 40 40 H 1.09003 * 109.46850 * 143.18223 * 21 20 19 41 41 H 1.08991 * 109.47319 * 23.18496 * 21 20 19 42 42 H 1.08994 * 113.61208 * 25.34571 * 22 5 3 43 43 H 1.09000 * 113.61523 * 156.16520 * 22 5 3 44 44 H 1.09009 * 109.46833 * 180.02562 * 26 25 23 45 45 H 1.09000 * 109.47377 * 299.99939 * 26 25 23 46 46 H 1.09001 * 109.47504 * 60.00074 * 26 25 23 47 47 H 1.09001 * 113.61545 * 270.88623 * 27 23 22 48 48 H 1.09001 * 113.61785 * 139.98097 * 27 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2750 -0.0006 6 7 4.1926 0.1998 0.7727 7 6 4.1811 0.2436 2.1197 8 8 3.5718 1.1249 2.6941 9 6 4.9089 -0.7790 2.8978 10 6 5.6794 -1.7503 2.2476 11 7 6.3333 -2.6681 2.9214 12 6 6.2988 -2.7225 4.2481 13 7 6.8791 -3.5617 5.1647 14 6 6.5254 -3.1893 6.4343 15 6 5.7201 -2.1171 6.3892 16 6 5.1116 -1.4004 7.5670 17 8 5.8008 -0.1673 7.7823 18 14 5.2584 -2.4676 9.0870 19 6 5.5495 -1.7745 4.9751 20 6 4.8379 -0.7902 4.2935 21 6 4.0217 0.2346 5.0382 22 6 4.1100 2.6735 0.3366 23 6 4.0424 2.9767 -1.1695 24 1 3.0840 3.3852 -1.4901 25 8 5.1573 3.7290 -1.6525 26 6 4.8511 4.5729 -2.7642 27 6 4.1747 1.4621 -1.4005 28 1 -0.3633 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8900 30 1 -0.3633 -1.0277 0.0005 31 1 4.6156 -0.5437 0.3151 32 1 5.7371 -1.7447 1.1691 33 1 7.4563 -4.3099 4.9457 34 1 6.8472 -3.6854 7.3380 35 1 4.0596 -1.1981 7.3653 36 1 5.4618 0.3480 8.5270 37 1 4.5188 -3.7398 8.8877 38 1 6.6879 -2.7506 9.3726 39 1 2.9797 -0.0838 5.0697 40 1 4.0926 1.1956 4.5287 41 1 4.4024 0.3334 6.0547 42 1 3.4256 3.2755 0.9343 43 1 5.1240 2.6630 0.7362 44 1 5.7491 5.1091 -3.0714 45 1 4.4900 3.9646 -3.5935 46 1 4.0809 5.2883 -2.4761 47 1 5.2070 1.1206 -1.4771 48 1 3.5427 1.0862 -2.2051 There are 69 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 69 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_12890568.mol2 48 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:50 Heat of formation + Delta-G solvation = -74.237559 kcal Electronic energy + Delta-G solvation = -35612.102840 eV Core-core repulsion = 30829.576789 eV Total energy + Delta-G solvation = -4782.526051 eV No. of doubly occupied orbitals = 69 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 376.156 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -43.00644 -42.56816 -40.88020 -40.00534 -38.78170 -37.83220 -37.71459 -37.21663 -35.18099 -34.52434 -32.14119 -31.18023 -29.36814 -28.91781 -27.85682 -27.12636 -26.63030 -25.99822 -24.73834 -24.05778 -23.17168 -21.96281 -20.79908 -20.45087 -19.58394 -19.22498 -18.75174 -18.32673 -18.14681 -17.71194 -17.62001 -17.32109 -17.07918 -16.78936 -16.56713 -16.10320 -15.89910 -15.72232 -15.35587 -15.18483 -15.10130 -14.95348 -14.76699 -14.45950 -14.22521 -14.14818 -13.80679 -13.73958 -13.66798 -13.60355 -13.39460 -13.27182 -13.09043 -13.05691 -12.59868 -12.50785 -12.33317 -12.01225 -11.96536 -11.94889 -11.81469 -11.26200 -11.10793 -10.61308 -10.52836 -10.46048 -10.16462 -9.75142 -9.26823 -4.91203 -0.45220 -0.18106 0.81210 1.24052 1.33885 1.39276 1.52151 1.71669 1.73982 1.75777 1.98863 2.65915 2.77683 3.03253 3.16874 3.20480 3.33193 3.44903 3.46430 3.51784 3.60497 3.66238 3.84014 3.96345 4.02482 4.05242 4.17689 4.21917 4.24004 4.41121 4.41612 4.47290 4.54035 4.54652 4.56596 4.60444 4.63455 4.67685 4.70389 4.74988 4.80548 4.87549 4.91952 5.04807 5.12360 5.19346 5.22936 5.38180 5.61386 6.07142 6.15140 6.27687 6.48398 6.72026 6.96769 7.00503 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.353 6.353 3 C 0.476 3.524 4 O -0.521 6.521 5 C 0.157 3.843 6 N -0.691 5.691 7 C 0.579 3.421 8 O -0.550 6.550 9 C -0.239 4.239 10 C 0.187 3.813 11 N -0.515 5.515 12 C 0.292 3.708 13 N -0.561 5.561 14 C 0.066 3.934 15 C -0.157 4.157 16 C -0.056 4.056 17 O -0.564 6.564 18 Si 0.785 3.215 19 C -0.171 4.171 20 C 0.072 3.928 21 C -0.130 4.130 22 C -0.112 4.112 23 C 0.064 3.936 24 H 0.096 0.904 25 O -0.386 6.386 26 C 0.021 3.979 27 C -0.123 4.123 28 H 0.054 0.946 29 H 0.070 0.930 30 H 0.131 0.869 31 H 0.423 0.577 32 H 0.201 0.799 33 H 0.438 0.562 34 H 0.199 0.801 35 H 0.080 0.920 36 H 0.401 0.599 37 H -0.287 1.287 38 H -0.280 1.280 39 H 0.078 0.922 40 H 0.091 0.909 41 H 0.088 0.912 42 H 0.070 0.930 43 H 0.108 0.892 44 H 0.098 0.902 45 H 0.056 0.944 46 H 0.045 0.955 47 H 0.139 0.861 48 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.001 -3.838 0.311 3.850 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.268 6.268 3 C 0.317 3.683 4 O -0.409 6.409 5 C 0.068 3.932 6 N -0.347 5.347 7 C 0.368 3.632 8 O -0.429 6.429 9 C -0.246 4.246 10 C 0.019 3.981 11 N -0.228 5.228 12 C 0.058 3.942 13 N -0.168 5.168 14 C -0.061 4.061 15 C -0.164 4.164 16 C -0.165 4.165 17 O -0.373 6.373 18 Si 0.688 3.312 19 C -0.178 4.178 20 C 0.064 3.936 21 C -0.186 4.186 22 C -0.150 4.150 23 C 0.005 3.995 24 H 0.114 0.886 25 O -0.305 6.305 26 C -0.075 4.075 27 C -0.161 4.161 28 H 0.073 0.927 29 H 0.089 0.911 30 H 0.149 0.851 31 H 0.264 0.736 32 H 0.218 0.782 33 H 0.279 0.721 34 H 0.216 0.784 35 H 0.098 0.902 36 H 0.252 0.748 37 H -0.214 1.214 38 H -0.207 1.207 39 H 0.096 0.904 40 H 0.109 0.891 41 H 0.107 0.893 42 H 0.089 0.911 43 H 0.127 0.873 44 H 0.117 0.883 45 H 0.075 0.925 46 H 0.063 0.937 47 H 0.157 0.843 48 H 0.123 0.877 Dipole moment (debyes) X Y Z Total from point charges 0.737 -4.675 0.243 4.739 hybrid contribution -0.660 0.074 -0.525 0.846 sum 0.077 -4.601 -0.282 4.610 Atomic orbital electron populations 1.23572 0.74710 1.05760 1.02532 1.86498 1.24892 1.32260 1.83187 1.23645 0.91509 0.81649 0.71463 1.90673 1.66936 1.37289 1.45961 1.20969 0.84667 0.90322 0.97254 1.45470 1.58443 1.25790 1.04961 1.18007 0.79278 0.83912 0.82036 1.90751 1.44150 1.38043 1.69952 1.20375 1.08319 1.02201 0.93742 1.23093 0.88084 0.86247 1.00719 1.66544 1.24500 1.26542 1.05239 1.18767 0.95026 0.91611 0.88774 1.41516 1.43328 1.28396 1.03560 1.22014 0.98352 0.98168 0.87536 1.20004 1.05102 0.99347 0.91940 1.24369 0.97178 0.92362 1.02640 1.86489 1.60908 1.33156 1.56772 0.93756 0.79055 0.77752 0.80630 1.19734 1.04198 0.99130 0.94698 1.20095 0.89888 0.91596 0.92068 1.21234 0.98353 0.97953 1.01012 1.23402 1.02581 0.91976 0.97055 1.23558 0.90672 0.91425 0.93822 0.88624 1.87915 1.33794 1.58872 1.49914 1.23017 1.02690 0.93674 0.88087 1.23853 1.04520 0.96047 0.91645 0.92747 0.91139 0.85117 0.73615 0.78219 0.72138 0.78421 0.90205 0.74816 1.21414 1.20660 0.90371 0.89090 0.89338 0.91079 0.87327 0.88349 0.92531 0.93667 0.84270 0.87732 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.02 10.56 113.37 1.20 1.22 16 2 O -0.35 -1.76 10.41 -51.46 -0.54 -2.30 16 3 C 0.48 3.52 6.77 71.24 0.48 4.00 16 4 O -0.52 -6.64 15.10 21.98 0.33 -6.31 16 5 C 0.16 0.38 1.12 3.39 0.00 0.38 16 6 N -0.69 0.01 5.02 -426.92 -2.14 -2.13 16 7 C 0.58 3.66 7.41 86.74 0.64 4.30 16 8 O -0.55 -7.07 12.40 -3.94 -0.05 -7.12 16 9 C -0.24 -1.42 5.89 -19.99 -0.12 -1.54 16 10 C 0.19 0.44 10.67 85.20 0.91 1.35 16 11 N -0.51 -3.31 10.37 -191.75 -1.99 -5.30 16 12 C 0.29 2.18 8.42 134.03 1.13 3.31 16 13 N -0.56 -1.21 6.04 -192.25 -1.16 -2.37 16 14 C 0.07 0.12 10.44 82.97 0.87 0.99 16 15 C -0.16 -0.81 5.61 -18.64 -0.10 -0.92 16 16 C -0.06 0.01 1.87 71.24 0.13 0.15 16 17 O -0.56 -0.14 11.65 -148.98 -1.74 -1.88 16 18 Si 0.79 -3.65 30.80 68.60 2.11 -1.54 16 19 C -0.17 -1.48 6.16 -20.19 -0.12 -1.61 16 20 C 0.07 0.63 5.98 -19.25 -0.12 0.52 16 21 C -0.13 -0.99 8.62 71.24 0.61 -0.38 16 22 C -0.11 -0.60 5.81 31.12 0.18 -0.42 16 23 C 0.06 0.14 3.92 31.12 0.12 0.26 16 24 H 0.10 0.30 7.32 -2.38 -0.02 0.28 16 25 O -0.39 -1.39 10.71 -148.98 -1.60 -2.98 16 26 C 0.02 -0.03 10.85 113.37 1.23 1.20 16 27 C -0.12 0.39 7.25 31.12 0.23 0.62 16 28 H 0.05 0.17 8.13 -2.39 -0.02 0.15 16 29 H 0.07 -0.02 8.13 -2.39 -0.02 -0.04 16 30 H 0.13 -0.67 8.14 -2.38 -0.02 -0.69 16 31 H 0.42 -3.03 6.85 -92.71 -0.64 -3.67 16 32 H 0.20 -1.37 6.44 -2.91 -0.02 -1.39 16 33 H 0.44 -1.62 8.96 -92.70 -0.83 -2.45 16 34 H 0.20 -0.70 6.31 -2.91 -0.02 -0.72 16 35 H 0.08 -0.16 7.12 -2.38 -0.02 -0.17 16 36 H 0.40 -4.06 8.74 -74.06 -0.65 -4.71 16 37 H -0.29 -0.21 7.11 99.48 0.71 0.50 16 38 H -0.28 -0.02 7.04 99.48 0.70 0.68 16 39 H 0.08 0.55 8.14 -2.39 -0.02 0.53 16 40 H 0.09 1.01 5.68 -2.39 -0.01 1.00 16 41 H 0.09 0.49 4.77 -2.39 -0.01 0.48 16 42 H 0.07 0.75 7.66 -2.39 -0.02 0.74 16 43 H 0.11 0.57 8.14 -2.39 -0.02 0.56 16 44 H 0.10 -0.33 8.14 -2.38 -0.02 -0.35 16 45 H 0.06 -0.22 8.14 -2.39 -0.02 -0.24 16 46 H 0.04 -0.06 8.14 -2.39 -0.02 -0.07 16 47 H 0.14 -0.97 8.14 -2.39 -0.02 -0.99 16 48 H 0.10 -0.63 8.10 -2.39 -0.02 -0.65 16 Total: 0.00 -29.21 395.19 -0.51 -29.72 By element: Atomic # 1 Polarization: -10.21 SS G_CDS: -1.01 Total: -11.22 kcal Atomic # 6 Polarization: 6.15 SS G_CDS: 7.27 Total: 13.43 kcal Atomic # 7 Polarization: -4.51 SS G_CDS: -5.29 Total: -9.80 kcal Atomic # 8 Polarization: -17.00 SS G_CDS: -3.58 Total: -20.59 kcal Atomic # 14 Polarization: -3.65 SS G_CDS: 2.11 Total: -1.54 kcal Total: -29.21 -0.51 -29.72 kcal The number of atoms in the molecule is 48 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_12890568.mol2 48 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -44.521 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.731 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.507 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -29.717 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.238 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds