Wall clock time and date at job start Sun Mar 7 2021 00:14:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34230 * 116.99699 * 2 1 4 4 O 1.20828 * 120.00069 * 359.97438 * 3 2 1 5 5 C 1.50698 * 120.00051 * 179.97438 * 3 2 1 6 6 N 1.46497 * 112.90623 * 24.24433 * 5 3 2 7 7 C 1.34773 * 120.00526 * 65.99138 * 6 5 3 8 8 O 1.21567 * 119.99748 * 5.00243 * 7 6 5 9 9 C 1.47714 * 120.00324 * 185.00403 * 7 6 5 10 10 C 1.39713 * 120.02647 * 359.72433 * 9 7 6 11 11 C 1.37662 * 119.97387 * 179.76763 * 10 9 7 12 12 C 1.39500 * 120.02759 * 0.50710 * 11 10 9 13 13 C 1.48281 * 119.97864 * 179.72276 * 12 11 10 14 14 C 1.39394 * 120.13065 * 179.75104 * 13 12 11 15 15 C 1.38002 * 119.87147 * 179.72107 * 14 13 12 16 16 C 1.38332 * 120.12714 * 0.53194 * 15 14 13 17 17 C 1.50703 * 119.87033 * 179.74708 * 16 15 14 18 18 O 1.42894 * 109.47047 * 120.02110 * 17 16 15 19 19 Si 1.86296 * 109.47101 * 0.02562 * 17 16 15 20 20 C 1.38331 * 120.25474 * 359.76198 * 16 15 14 21 21 C 1.38004 * 120.13250 * 359.95802 * 20 16 15 22 22 C 1.39508 * 120.04767 * 359.74713 * 12 11 10 23 23 C 1.37661 * 120.02425 * 359.97438 * 22 12 11 24 24 C 1.53784 * 113.61390 * 252.99198 * 5 3 2 25 25 C 1.53948 * 87.10953 * 220.08925 * 24 5 3 26 26 H 1.09003 * 113.66947 * 139.89063 * 25 24 5 27 27 O 1.42902 * 113.61345 * 270.83985 * 25 24 5 28 28 C 1.42899 * 114.00497 * 247.42271 * 27 25 24 29 29 C 1.53778 * 113.61554 * 155.49456 * 5 3 2 30 30 H 1.09002 * 109.47807 * 300.00067 * 1 2 3 31 31 H 1.08997 * 109.47278 * 60.00592 * 1 2 3 32 32 H 1.08999 * 109.47215 * 179.97438 * 1 2 3 33 33 H 0.97010 * 119.99514 * 245.99277 * 6 5 3 34 34 H 1.08001 * 120.00704 * 0.02562 * 10 9 7 35 35 H 1.08000 * 119.98167 * 180.23210 * 11 10 9 36 36 H 1.07999 * 120.06175 * 359.97438 * 14 13 12 37 37 H 1.08005 * 119.93505 * 180.27610 * 15 14 13 38 38 H 1.09003 * 109.46468 * 240.01457 * 17 16 15 39 39 H 0.96704 * 113.99954 * 180.02562 * 18 17 16 40 40 H 1.48507 * 109.99824 * 60.00620 * 19 17 16 41 41 H 1.48501 * 109.99830 * 181.32043 * 19 17 16 42 42 H 1.08001 * 119.93600 * 179.97438 * 20 16 15 43 43 H 1.07994 * 120.06797 * 179.97438 * 21 20 16 44 44 H 1.08001 * 119.98536 * 179.97438 * 22 12 11 45 45 H 1.07999 * 120.01263 * 180.02562 * 23 22 12 46 46 H 1.09000 * 113.61292 * 334.56562 * 24 5 3 47 47 H 1.09004 * 113.61529 * 105.38466 * 24 5 3 48 48 H 1.09002 * 109.46970 * 300.00698 * 28 27 25 49 49 H 1.09010 * 109.46533 * 59.99645 * 28 27 25 50 50 H 1.08996 * 109.47541 * 179.97438 * 28 27 25 51 51 H 1.09001 * 113.61452 * 254.52824 * 29 5 3 52 52 H 1.09002 * 113.61550 * 25.34896 * 29 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1960 0.0000 4 8 1.4032 2.2093 -0.0005 5 6 3.5662 1.2750 0.0006 6 7 4.2003 0.0760 -0.5530 7 6 4.0415 -0.2298 -1.8560 8 8 3.4491 0.5351 -2.5920 9 6 4.5873 -1.4945 -2.3897 10 6 5.2732 -2.3713 -1.5455 11 6 5.7772 -3.5518 -2.0430 12 6 5.6125 -3.8678 -3.3917 13 6 6.1611 -5.1369 -3.9277 14 6 5.9939 -5.4582 -5.2737 15 6 6.5117 -6.6380 -5.7682 16 6 7.1861 -7.5061 -4.9284 17 6 7.7443 -8.7955 -5.4733 18 8 9.1602 -8.8201 -5.2821 19 14 7.3612 -8.9185 -7.2923 20 6 7.3499 -7.1953 -3.5905 21 6 6.8414 -6.0157 -3.0860 22 6 4.9324 -2.9906 -4.2367 23 6 4.4226 -1.8122 -3.7402 24 6 4.1593 1.7191 1.3482 25 6 5.1635 2.5609 0.5402 26 1 5.3628 3.5406 0.9747 27 8 6.3557 1.8532 0.1940 28 6 7.5310 2.3410 0.8443 29 6 4.1145 2.5875 -0.5839 30 1 -0.3635 0.5138 0.8900 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 4.7345 -0.4978 0.0183 34 1 5.4043 -2.1249 -0.5022 35 1 6.3042 -4.2315 -1.3897 36 1 5.4637 -4.7833 -5.9292 37 1 6.3866 -6.8859 -6.8119 38 1 7.2922 -9.6374 -4.9488 39 1 9.5876 -9.6230 -5.6105 40 1 7.9723 -7.7763 -8.0184 41 1 7.8785 -10.2004 -7.8347 42 1 7.8769 -7.8770 -2.9394 43 1 6.9694 -5.7743 -2.0412 44 1 4.8058 -3.2360 -5.2808 45 1 3.8957 -1.1334 -4.3944 46 1 3.4752 2.3171 1.9504 47 1 4.6199 0.9074 1.9113 48 1 7.6876 3.3857 0.5758 49 1 7.4095 2.2577 1.9244 50 1 8.3919 1.7514 0.5292 51 1 4.5402 2.4771 -1.5812 52 1 3.4177 3.4225 -0.5112 There are 73 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 73 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13158362.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:14:55 Heat of formation + Delta-G solvation = -92.434585 kcal Electronic energy + Delta-G solvation = -36923.181154 eV Core-core repulsion = 32014.265562 eV Total energy + Delta-G solvation = -4908.915593 eV No. of doubly occupied orbitals = 73 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 398.165 amu Computer time = 1.75 seconds Orbital eigenvalues (eV) -42.56363 -41.23840 -40.67750 -40.06113 -39.05292 -37.77335 -37.65211 -37.01469 -34.64659 -33.78854 -32.52980 -31.56146 -30.88528 -29.37440 -27.79818 -27.16646 -27.09156 -26.26715 -24.62903 -24.43419 -22.84967 -22.56609 -22.28853 -21.32986 -20.53026 -19.40371 -19.15052 -18.55854 -18.26442 -18.07013 -17.46076 -17.32770 -17.08057 -16.90155 -16.63397 -16.23326 -16.06611 -15.91787 -15.65192 -15.51151 -15.37358 -15.06410 -14.92406 -14.81680 -14.69378 -14.44187 -14.30956 -14.06951 -13.97791 -13.74570 -13.67943 -13.47614 -13.37110 -13.21256 -13.05350 -12.89312 -12.58069 -12.51086 -12.18400 -12.10817 -12.07381 -11.92399 -11.88717 -11.66061 -11.61344 -11.09650 -10.79087 -10.62388 -10.44719 -10.29034 -10.03882 -9.93378 -9.04880 -4.93669 -0.67650 0.37553 0.42277 0.50657 0.88214 1.29335 1.52380 1.58754 1.77599 1.87049 1.94155 2.59202 2.59785 2.99892 3.16610 3.20135 3.36136 3.43405 3.48401 3.58526 3.65072 3.78330 3.85867 3.89753 4.02947 4.06838 4.15909 4.19710 4.20768 4.27593 4.30932 4.37639 4.43328 4.46026 4.51671 4.54780 4.59186 4.60133 4.66713 4.68314 4.70454 4.74991 4.83227 4.90615 4.93651 4.93791 5.10284 5.14635 5.19782 5.20719 5.22882 5.28965 5.43209 5.52298 5.67197 5.81317 5.94566 6.21214 6.34791 6.51791 6.57517 7.04726 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.358 6.358 3 C 0.468 3.532 4 O -0.529 6.529 5 C 0.153 3.847 6 N -0.675 5.675 7 C 0.566 3.434 8 O -0.574 6.574 9 C -0.148 4.148 10 C -0.070 4.070 11 C -0.119 4.119 12 C -0.020 4.020 13 C -0.060 4.060 14 C -0.107 4.107 15 C -0.123 4.123 16 C -0.082 4.082 17 C -0.085 4.085 18 O -0.558 6.558 19 Si 0.758 3.242 20 C -0.103 4.103 21 C -0.107 4.107 22 C -0.122 4.122 23 C -0.069 4.069 24 C -0.127 4.127 25 C 0.077 3.923 26 H 0.111 0.889 27 O -0.380 6.380 28 C 0.024 3.976 29 C -0.131 4.131 30 H 0.070 0.930 31 H 0.051 0.949 32 H 0.129 0.871 33 H 0.422 0.578 34 H 0.156 0.844 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.142 0.858 38 H 0.098 0.902 39 H 0.395 0.605 40 H -0.301 1.301 41 H -0.287 1.287 42 H 0.134 0.866 43 H 0.149 0.851 44 H 0.148 0.852 45 H 0.126 0.874 46 H 0.124 0.876 47 H 0.119 0.881 48 H 0.047 0.953 49 H 0.060 0.940 50 H 0.093 0.907 51 H 0.071 0.929 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.124 -5.225 5.604 7.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.273 6.273 3 C 0.310 3.690 4 O -0.417 6.417 5 C 0.063 3.937 6 N -0.330 5.330 7 C 0.356 3.644 8 O -0.454 6.454 9 C -0.151 4.151 10 C -0.088 4.088 11 C -0.136 4.136 12 C -0.020 4.020 13 C -0.060 4.060 14 C -0.125 4.125 15 C -0.140 4.140 16 C -0.082 4.082 17 C -0.194 4.194 18 O -0.368 6.368 19 Si 0.664 3.336 20 C -0.121 4.121 21 C -0.124 4.124 22 C -0.140 4.140 23 C -0.088 4.088 24 C -0.164 4.164 25 C 0.018 3.982 26 H 0.129 0.871 27 O -0.299 6.299 28 C -0.072 4.072 29 C -0.170 4.170 30 H 0.089 0.911 31 H 0.070 0.930 32 H 0.147 0.853 33 H 0.262 0.738 34 H 0.174 0.826 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.159 0.841 38 H 0.116 0.884 39 H 0.245 0.755 40 H -0.229 1.229 41 H -0.214 1.214 42 H 0.152 0.848 43 H 0.167 0.833 44 H 0.166 0.834 45 H 0.144 0.856 46 H 0.143 0.857 47 H 0.137 0.863 48 H 0.065 0.935 49 H 0.079 0.921 50 H 0.112 0.888 51 H 0.090 0.910 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 1.660 -4.071 4.455 6.259 hybrid contribution 0.886 -0.316 0.190 0.960 sum 2.546 -4.387 4.645 6.878 Atomic orbital electron populations 1.23526 0.75092 1.05602 1.02353 1.86520 1.24728 1.32932 1.83154 1.24277 0.92265 0.81455 0.70954 1.90651 1.67029 1.37274 1.46795 1.21285 0.83256 0.88494 1.00662 1.45158 1.52466 1.25546 1.09790 1.18566 0.78275 0.85878 0.81726 1.90779 1.44036 1.51865 1.58704 1.19877 1.04458 0.95250 0.95561 1.21445 0.94376 0.92798 1.00207 1.21455 1.00213 0.97297 0.94637 1.19131 0.95888 0.92976 0.94034 1.18925 0.99317 0.93752 0.94046 1.21455 0.99222 0.96881 0.94896 1.21088 0.98965 0.94231 0.99723 1.19619 0.98419 0.95632 0.94533 1.24987 0.83456 0.98123 1.12788 1.86540 1.19291 1.46934 1.84005 0.94208 0.90851 0.76242 0.72332 1.21113 0.98678 0.97285 0.94991 1.21532 0.96750 0.93376 1.00774 1.21365 0.98233 0.93341 1.01063 1.21219 0.96847 0.96527 0.94201 1.23866 0.98113 1.01993 0.92439 1.22979 0.84813 0.96275 0.94121 0.87106 1.87903 1.15592 1.57730 1.68628 1.23020 0.86761 0.99754 0.97656 1.23598 0.97877 0.95098 1.00386 0.91120 0.93036 0.85298 0.73786 0.82628 0.82498 0.83539 0.84104 0.88435 0.75461 1.22865 1.21439 0.84837 0.83331 0.83420 0.85607 0.85738 0.86301 0.93472 0.92133 0.88832 0.90996 0.86965 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.09 10.56 113.37 1.20 1.28 16 2 O -0.36 -2.81 10.23 -51.41 -0.53 -3.34 16 3 C 0.47 4.44 6.59 71.24 0.47 4.91 16 4 O -0.53 -7.61 15.81 21.96 0.35 -7.26 16 5 C 0.15 0.58 1.01 3.38 0.00 0.59 16 6 N -0.68 -1.58 4.38 -426.90 -1.87 -3.45 16 7 C 0.57 4.75 7.27 86.75 0.63 5.38 16 8 O -0.57 -9.59 14.88 -3.93 -0.06 -9.65 16 9 C -0.15 -0.68 5.88 -20.06 -0.12 -0.79 16 10 C -0.07 0.11 9.52 22.49 0.21 0.33 16 11 C -0.12 0.25 9.41 22.44 0.21 0.46 16 12 C -0.02 -0.01 5.88 -19.99 -0.12 -0.13 16 13 C -0.06 -0.05 5.88 -20.04 -0.12 -0.17 16 14 C -0.11 -0.02 9.43 22.49 0.21 0.20 16 15 C -0.12 -0.05 8.65 22.24 0.19 0.15 16 16 C -0.08 -0.12 5.43 -19.82 -0.11 -0.23 16 17 C -0.08 0.10 2.81 71.24 0.20 0.30 16 18 O -0.56 -0.87 12.74 -148.98 -1.90 -2.77 16 19 Si 0.76 -1.55 29.77 68.60 2.04 0.50 16 20 C -0.10 -0.10 9.59 22.24 0.21 0.11 16 21 C -0.11 0.05 9.43 22.50 0.21 0.26 16 22 C -0.12 -0.21 9.41 22.44 0.21 0.00 16 23 C -0.07 -0.36 9.58 22.49 0.22 -0.15 16 24 C -0.13 0.50 7.20 31.18 0.22 0.73 16 25 C 0.08 -0.16 4.38 31.18 0.14 -0.02 16 26 H 0.11 -0.66 7.87 -2.39 -0.02 -0.68 16 27 O -0.38 0.24 10.14 -148.98 -1.51 -1.27 16 28 C 0.02 -0.13 10.85 113.37 1.23 1.10 16 29 C -0.13 -0.65 6.67 31.12 0.21 -0.44 16 30 H 0.07 0.12 8.13 -2.39 -0.02 0.10 16 31 H 0.05 0.29 8.13 -2.39 -0.02 0.27 16 32 H 0.13 -0.36 8.14 -2.39 -0.02 -0.38 16 33 H 0.42 -1.70 6.70 -92.70 -0.62 -2.32 16 34 H 0.16 -1.25 6.40 -2.91 -0.02 -1.27 16 35 H 0.16 -1.16 6.19 -2.91 -0.02 -1.18 16 36 H 0.15 -0.55 6.19 -2.91 -0.02 -0.57 16 37 H 0.14 -0.44 4.86 -2.91 -0.01 -0.45 16 38 H 0.10 -0.52 7.96 -2.39 -0.02 -0.54 16 39 H 0.39 -2.49 8.74 -74.05 -0.65 -3.14 16 40 H -0.30 -1.70 7.11 99.48 0.71 -0.99 16 41 H -0.29 -0.62 7.11 99.48 0.71 0.09 16 42 H 0.13 -0.12 8.06 -2.91 -0.02 -0.14 16 43 H 0.15 -0.80 6.19 -2.91 -0.02 -0.82 16 44 H 0.15 -0.33 6.19 -2.91 -0.02 -0.35 16 45 H 0.13 0.88 7.64 -2.91 -0.02 0.86 16 46 H 0.12 -0.68 8.09 -2.39 -0.02 -0.70 16 47 H 0.12 -1.00 8.09 -2.39 -0.02 -1.02 16 48 H 0.05 -0.27 8.14 -2.39 -0.02 -0.29 16 49 H 0.06 -0.52 8.14 -2.38 -0.02 -0.54 16 50 H 0.09 -0.61 8.14 -2.39 -0.02 -0.63 16 51 H 0.07 0.75 7.19 -2.39 -0.02 0.73 16 52 H 0.11 0.64 7.38 -2.39 -0.02 0.62 16 Total: 0.00 -28.53 430.17 1.81 -26.72 By element: Atomic # 1 Polarization: -13.12 SS G_CDS: -0.23 Total: -13.35 kcal Atomic # 6 Polarization: 8.35 SS G_CDS: 5.52 Total: 13.87 kcal Atomic # 7 Polarization: -1.58 SS G_CDS: -1.87 Total: -3.45 kcal Atomic # 8 Polarization: -20.64 SS G_CDS: -3.65 Total: -24.29 kcal Atomic # 14 Polarization: -1.55 SS G_CDS: 2.04 Total: 0.50 kcal Total: -28.53 1.81 -26.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13158362.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -65.715 kcal (2) G-P(sol) polarization free energy of solvation -28.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -26.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.435 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.76 seconds