Wall clock time and date at job start Sun Mar 7 2021 00:15:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45203 * 1 3 3 C 1.34232 * 117.00088 * 2 1 4 4 O 1.20826 * 119.99732 * 359.97438 * 3 2 1 5 5 C 1.50697 * 120.00096 * 180.02562 * 3 2 1 6 6 N 1.46506 * 112.84747 * 334.65995 * 5 3 2 7 7 C 1.34776 * 119.99989 * 50.34139 * 6 5 3 8 8 O 1.21645 * 119.99756 * 359.97438 * 7 6 5 9 9 C 1.47056 * 120.00143 * 179.97438 * 7 6 5 10 10 C 1.35858 * 125.42815 * 180.02562 * 9 7 6 11 11 C 1.41598 * 107.73004 * 179.97438 * 10 9 7 12 12 C 1.40067 * 133.38344 * 180.02562 * 11 10 9 13 13 C 1.36472 * 119.82822 * 179.97438 * 12 11 10 14 14 C 1.38896 * 120.61584 * 0.02562 * 13 12 11 15 15 C 1.50707 * 119.67364 * 180.02562 * 14 13 12 16 16 O 1.42905 * 109.46923 * 119.99868 * 15 14 13 17 17 Si 1.86297 * 109.47008 * 0.02562 * 15 14 13 18 18 C 1.37708 * 120.64780 * 0.02562 * 14 13 12 19 19 C 1.39184 * 119.81320 * 359.95947 * 18 14 13 20 20 N 1.37484 * 133.18942 * 180.33859 * 19 18 14 21 21 C 1.53781 * 113.61347 * 203.46775 * 5 3 2 22 22 C 1.53782 * 87.08260 * 270.79732 * 21 5 3 23 23 H 1.09000 * 113.61104 * 89.19387 * 22 21 5 24 24 O 1.42891 * 113.61386 * 220.01806 * 22 21 5 25 25 C 1.42897 * 114.00022 * 209.99361 * 24 22 21 26 26 C 1.53773 * 113.61644 * 105.85965 * 5 3 2 27 27 H 1.08995 * 109.46925 * 60.00531 * 1 2 3 28 28 H 1.08998 * 109.46864 * 180.02562 * 1 2 3 29 29 H 1.09000 * 109.46702 * 300.00189 * 1 2 3 30 30 H 0.97000 * 119.99526 * 230.33278 * 6 5 3 31 31 H 1.08005 * 126.13643 * 359.96318 * 10 9 7 32 32 H 1.08000 * 120.08220 * 0.02562 * 12 11 10 33 33 H 1.08002 * 119.68986 * 180.02562 * 13 12 11 34 34 H 1.08997 * 109.46875 * 239.99587 * 15 14 13 35 35 H 0.96701 * 114.00285 * 300.00235 * 16 15 14 36 36 H 1.48499 * 110.00107 * 58.68102 * 17 15 14 37 37 H 1.48503 * 109.99608 * 179.97438 * 17 15 14 38 38 H 1.08006 * 120.09150 * 179.97438 * 18 14 13 39 39 H 0.97000 * 125.60240 * 359.96962 * 20 19 18 40 40 H 1.09005 * 113.61233 * 25.34462 * 21 5 3 41 41 H 1.09005 * 113.61544 * 156.16128 * 21 5 3 42 42 H 1.09004 * 109.46674 * 60.00823 * 25 24 22 43 43 H 1.08998 * 109.47602 * 179.97438 * 25 24 22 44 44 H 1.08995 * 109.47691 * 300.00672 * 25 24 22 45 45 H 1.09000 * 113.61464 * 203.74598 * 26 5 3 46 46 H 1.09003 * 113.61910 * 334.64878 * 26 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0615 1.1960 0.0000 4 8 1.4034 2.2093 -0.0005 5 6 3.5664 1.2749 -0.0006 6 7 4.1985 0.0860 0.5768 7 6 3.8373 -1.1417 0.1541 8 8 2.9860 -1.2627 -0.7064 9 6 4.4722 -2.3351 0.7332 10 6 4.1940 -3.6199 0.3904 11 6 5.0173 -4.4635 1.1751 12 6 5.1689 -5.8535 1.2579 13 6 6.0687 -6.3872 2.1342 14 6 6.8375 -5.5645 2.9474 15 6 7.8252 -6.1765 3.9071 16 8 9.1408 -5.7129 3.5968 17 14 7.7697 -8.0325 3.7557 18 6 6.7060 -4.1951 2.8853 19 6 5.7953 -3.6268 1.9994 20 7 5.4493 -2.3281 1.7097 21 6 4.1141 2.5977 0.5606 22 6 4.0337 3.1482 -0.8731 23 1 3.0733 3.6051 -1.1121 24 8 5.1448 3.9712 -1.2333 25 6 4.8298 4.9887 -2.1859 26 6 4.1609 1.6919 -1.3560 27 1 -0.3633 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3633 0.5139 0.8900 30 1 4.8771 0.1825 1.2631 31 1 3.4740 -3.9405 -0.3480 32 1 4.5758 -6.5011 0.6292 33 1 6.1841 -7.4592 2.1959 34 1 7.5688 -5.8868 4.9262 35 1 9.4358 -5.9355 2.7031 36 1 8.0866 -8.4382 2.3628 37 1 8.7397 -8.6480 4.6967 38 1 7.3081 -3.5638 3.5221 39 1 5.8285 -1.5370 2.1237 40 1 3.4354 3.0911 1.2565 41 1 5.1316 2.5214 0.9441 42 1 4.0628 5.6456 -1.7755 43 1 5.7251 5.5699 -2.4064 44 1 4.4609 4.5274 -3.1019 45 1 5.1917 1.3678 -1.4990 46 1 3.5201 1.4551 -2.2054 There are 66 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 66 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV s_22_14247462_13158378.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:01 Heat of formation + Delta-G solvation = -82.127313 kcal Electronic energy + Delta-G solvation = -32513.458655 eV Core-core repulsion = 27951.554008 eV Total energy + Delta-G solvation = -4561.904647 eV No. of doubly occupied orbitals = 66 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 361.145 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.82935 -42.34513 -40.34057 -39.88308 -38.97102 -37.73030 -37.03055 -36.91665 -34.43779 -33.26540 -31.16647 -30.41442 -29.22229 -27.98770 -27.32712 -27.04123 -25.85995 -24.40798 -23.45394 -22.76028 -22.00210 -21.14426 -20.75020 -19.71839 -19.09052 -18.52695 -17.99012 -17.70856 -17.61787 -17.22962 -17.07360 -16.71997 -16.40637 -16.19293 -16.00426 -15.83222 -15.54053 -15.26660 -15.11194 -14.93694 -14.79880 -14.62753 -14.42608 -14.36863 -13.98099 -13.73546 -13.67704 -13.32631 -13.15060 -12.99034 -12.64143 -12.58418 -12.54844 -12.33128 -12.16449 -12.05867 -11.69429 -11.58616 -11.57604 -11.07260 -10.95079 -10.66783 -10.61032 -10.41510 -9.33601 -8.83190 -4.93913 -0.34254 0.51326 0.93084 1.04848 1.28443 1.59304 1.62159 1.66743 1.80655 1.98870 2.26572 2.71863 2.76368 2.87631 3.15124 3.34110 3.41718 3.55741 3.60816 3.64734 3.69705 3.96360 4.00407 4.23295 4.24683 4.28185 4.29341 4.33763 4.39125 4.39654 4.41277 4.43891 4.48477 4.56571 4.60329 4.65155 4.68630 4.71955 4.73685 4.88520 4.95655 5.00573 5.31288 5.38911 5.40576 5.51140 5.60246 5.94481 6.07555 6.12156 6.29068 6.38559 6.69087 6.97528 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.311 6.311 3 C 0.477 3.523 4 O -0.502 6.502 5 C 0.156 3.844 6 N -0.716 5.716 7 C 0.581 3.419 8 O -0.473 6.473 9 C 0.018 3.982 10 C -0.099 4.099 11 C -0.116 4.116 12 C -0.051 4.051 13 C -0.146 4.146 14 C -0.086 4.086 15 C -0.075 4.075 16 O -0.531 6.531 17 Si 0.689 3.311 18 C -0.104 4.104 19 C 0.116 3.884 20 N -0.579 5.579 21 C -0.118 4.118 22 C 0.068 3.932 23 H 0.106 0.894 24 O -0.372 6.372 25 C 0.028 3.972 26 C -0.143 4.143 27 H 0.063 0.937 28 H 0.103 0.897 29 H 0.060 0.940 30 H 0.403 0.597 31 H 0.159 0.841 32 H 0.132 0.868 33 H 0.129 0.871 34 H 0.119 0.881 35 H 0.377 0.623 36 H -0.259 1.259 37 H -0.259 1.259 38 H 0.127 0.873 39 H 0.417 0.583 40 H 0.096 0.904 41 H 0.114 0.886 42 H 0.046 0.954 43 H 0.089 0.911 44 H 0.044 0.956 45 H 0.113 0.887 46 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.043 -0.436 1.244 1.319 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.225 6.225 3 C 0.318 3.682 4 O -0.390 6.390 5 C 0.068 3.932 6 N -0.371 5.371 7 C 0.367 3.633 8 O -0.344 6.344 9 C -0.091 4.091 10 C -0.126 4.126 11 C -0.121 4.121 12 C -0.070 4.070 13 C -0.164 4.164 14 C -0.089 4.089 15 C -0.185 4.185 16 O -0.337 6.337 17 Si 0.590 3.410 18 C -0.125 4.125 19 C 0.006 3.994 20 N -0.184 5.184 21 C -0.156 4.156 22 C 0.009 3.991 23 H 0.124 0.876 24 O -0.290 6.290 25 C -0.069 4.069 26 C -0.182 4.182 27 H 0.081 0.919 28 H 0.121 0.879 29 H 0.079 0.921 30 H 0.239 0.761 31 H 0.176 0.824 32 H 0.150 0.850 33 H 0.147 0.853 34 H 0.137 0.863 35 H 0.224 0.776 36 H -0.184 1.184 37 H -0.184 1.184 38 H 0.145 0.855 39 H 0.255 0.745 40 H 0.115 0.885 41 H 0.132 0.868 42 H 0.065 0.935 43 H 0.108 0.892 44 H 0.063 0.937 45 H 0.131 0.869 46 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -0.330 -0.608 1.107 1.305 hybrid contribution 0.836 1.180 -0.255 1.468 sum 0.505 0.571 0.851 1.143 Atomic orbital electron populations 1.23351 0.76973 1.03972 1.02233 1.86988 1.22687 1.30660 1.82200 1.22983 0.90186 0.82460 0.72572 1.90697 1.66022 1.36597 1.45653 1.21030 0.86795 0.86427 0.98980 1.45713 1.43389 1.04494 1.43482 1.17198 0.82040 0.81426 0.82631 1.90924 1.29068 1.85070 1.29370 1.20016 0.96948 0.95149 0.97000 1.20953 1.00913 0.89583 1.01124 1.18227 1.00217 0.93623 0.99995 1.20374 0.96894 0.92461 0.97227 1.20479 0.98618 0.99157 0.98160 1.19974 0.97984 0.93026 0.97866 1.25053 0.82118 1.10714 1.00574 1.86596 1.30305 1.79624 1.37191 0.94849 0.90313 0.74559 0.81256 1.19862 0.98646 0.94433 0.99523 1.18296 0.98770 0.83472 0.98900 1.41906 1.34819 1.06743 1.34969 1.23516 1.03198 0.90705 0.98187 1.23575 0.91311 0.89944 0.94279 0.87639 1.87913 1.33413 1.46002 1.61695 1.22871 1.02073 0.90339 0.91584 1.23972 1.03192 0.95912 0.95152 0.91852 0.87901 0.92148 0.76128 0.82374 0.85026 0.85320 0.86341 0.77565 1.18407 1.18389 0.85536 0.74511 0.88531 0.86813 0.93538 0.89208 0.93689 0.86880 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.03 10.56 101.05 1.07 1.10 16 2 O -0.31 -1.06 6.30 -47.61 -0.30 -1.36 16 3 C 0.48 1.40 6.98 36.00 0.25 1.66 16 4 O -0.50 -2.28 14.99 -18.75 -0.28 -2.56 16 5 C 0.16 0.03 1.22 -132.16 -0.16 -0.13 16 6 N -0.72 0.84 5.31 -49.10 -0.26 0.58 16 7 C 0.58 0.74 7.15 -12.69 -0.09 0.65 16 8 O -0.47 -2.01 13.36 -19.99 -0.27 -2.27 16 9 C 0.02 0.01 6.96 -82.30 -0.57 -0.56 16 10 C -0.10 -0.12 10.53 -39.15 -0.41 -0.54 16 11 C -0.12 -0.13 6.16 -106.93 -0.66 -0.78 16 12 C -0.05 0.01 10.06 -39.53 -0.40 -0.39 16 13 C -0.15 0.10 8.59 -39.98 -0.34 -0.24 16 14 C -0.09 0.03 5.40 -104.57 -0.56 -0.53 16 15 C -0.07 0.06 2.81 36.01 0.10 0.16 16 16 O -0.53 -0.33 12.76 -35.23 -0.45 -0.78 16 17 Si 0.69 -0.94 29.75 -169.99 -5.06 -6.00 16 18 C -0.10 0.00 9.61 -39.42 -0.38 -0.38 16 19 C 0.12 0.05 7.25 -83.98 -0.61 -0.55 16 20 N -0.58 0.70 6.07 -7.36 -0.04 0.66 16 21 C -0.12 0.14 6.96 -25.92 -0.18 -0.04 16 22 C 0.07 0.01 3.90 -25.82 -0.10 -0.09 16 23 H 0.11 0.08 7.06 -51.93 -0.37 -0.29 16 24 O -0.37 -0.39 10.72 -35.23 -0.38 -0.76 16 25 C 0.03 -0.02 10.85 101.05 1.10 1.07 16 26 C -0.14 -0.02 7.29 -25.83 -0.19 -0.21 16 27 H 0.06 0.07 8.13 -51.93 -0.42 -0.35 16 28 H 0.10 -0.06 8.14 -51.93 -0.42 -0.49 16 29 H 0.06 0.04 8.13 -51.93 -0.42 -0.38 16 30 H 0.40 -1.70 7.69 -40.82 -0.31 -2.01 16 31 H 0.16 0.09 8.06 -52.48 -0.42 -0.33 16 32 H 0.13 -0.27 8.06 -52.49 -0.42 -0.70 16 33 H 0.13 -0.32 4.82 -52.49 -0.25 -0.57 16 34 H 0.12 -0.19 7.96 -51.93 -0.41 -0.60 16 35 H 0.38 -0.76 8.70 45.56 0.40 -0.36 16 36 H -0.26 -0.16 7.11 56.52 0.40 0.24 16 37 H -0.26 -0.53 7.11 56.52 0.40 -0.13 16 38 H 0.13 -0.11 8.06 -52.48 -0.42 -0.53 16 39 H 0.42 -1.77 8.12 -40.82 -0.33 -2.10 16 40 H 0.10 -0.09 7.85 -51.93 -0.41 -0.50 16 41 H 0.11 -0.34 8.13 -51.93 -0.42 -0.77 16 42 H 0.05 -0.06 8.14 -51.93 -0.42 -0.49 16 43 H 0.09 -0.17 8.14 -51.93 -0.42 -0.59 16 44 H 0.04 -0.06 8.14 -51.93 -0.42 -0.48 16 45 H 0.11 -0.04 8.14 -51.93 -0.42 -0.47 16 46 H 0.08 0.08 8.09 -51.93 -0.42 -0.34 16 LS Contribution 385.32 15.07 5.81 5.81 Total: 0.00 -9.40 385.32 -9.33 -18.73 By element: Atomic # 1 Polarization: -6.28 SS G_CDS: -5.96 Total: -12.23 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -2.14 Total: 0.19 kcal Atomic # 7 Polarization: 1.54 SS G_CDS: -0.31 Total: 1.24 kcal Atomic # 8 Polarization: -6.06 SS G_CDS: -1.68 Total: -7.74 kcal Atomic # 14 Polarization: -0.94 SS G_CDS: -5.06 Total: -6.00 kcal Total LS contribution 5.81 Total: 5.81 kcal Total: -9.40 -9.33 -18.73 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13158378.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.398 kcal (2) G-P(sol) polarization free energy of solvation -9.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -18.730 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.127 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds