Wall clock time and date at job start Sun Mar 7 2021 00:15:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= 0 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45200 * 1 3 3 C 1.34232 * 117.00053 * 2 1 4 4 O 1.20827 * 119.99565 * 359.97438 * 3 2 1 5 5 C 1.50693 * 120.00141 * 179.97438 * 3 2 1 6 6 N 1.46503 * 112.90521 * 335.17632 * 5 3 2 7 7 C 1.34776 * 119.99831 * 174.65283 * 6 5 3 8 8 O 1.21284 * 119.99962 * 5.34336 * 7 6 5 9 9 C 1.50705 * 120.00250 * 185.34818 * 7 6 5 10 10 C 1.50697 * 109.47240 * 174.95185 * 9 7 6 11 11 C 1.39317 * 120.06328 * 84.53835 * 10 9 7 12 12 C 1.48391 * 120.11828 * 0.02562 * 11 10 9 13 13 C 1.39331 * 120.12113 * 236.70076 * 12 11 10 14 14 C 1.38020 * 119.87648 * 179.70379 * 13 12 11 15 15 C 1.38321 * 120.12043 * 0.59200 * 14 13 12 16 16 C 1.50700 * 119.87683 * 179.70538 * 15 14 13 17 17 O 1.42894 * 109.47405 * 119.97762 * 16 15 14 18 18 Si 1.86301 * 109.46968 * 359.97438 * 16 15 14 19 19 C 1.38320 * 120.24632 * 359.67916 * 15 14 13 20 20 C 1.38018 * 120.11704 * 0.02562 * 19 15 14 21 21 C 1.39353 * 119.75781 * 179.97438 * 11 10 9 22 22 C 1.37990 * 119.88054 * 0.02562 * 21 11 10 23 23 C 1.38346 * 120.12116 * 359.97438 * 22 21 11 24 24 C 1.38044 * 120.05953 * 264.26069 * 10 9 7 25 25 C 1.53777 * 113.61563 * 203.92541 * 5 3 2 26 26 C 1.53781 * 87.08198 * 270.88394 * 25 5 3 27 27 H 1.08995 * 113.61453 * 89.11374 * 26 25 5 28 28 O 1.42902 * 113.61248 * 220.02186 * 26 25 5 29 29 C 1.42908 * 113.99785 * 209.99800 * 28 26 25 30 30 C 1.53784 * 113.61588 * 106.42485 * 5 3 2 31 31 H 1.08998 * 109.47491 * 300.00593 * 1 2 3 32 32 H 1.09003 * 109.46754 * 60.00770 * 1 2 3 33 33 H 1.09001 * 109.47223 * 179.97438 * 1 2 3 34 34 H 0.96993 * 120.00402 * 354.64812 * 6 5 3 35 35 H 1.08994 * 109.46813 * 294.95442 * 9 7 6 36 36 H 1.09002 * 109.46956 * 54.94607 * 9 7 6 37 37 H 1.08001 * 120.06222 * 359.97438 * 13 12 11 38 38 H 1.08000 * 119.93933 * 180.27774 * 14 13 12 39 39 H 1.09000 * 109.46993 * 239.97775 * 16 15 14 40 40 H 0.96701 * 114.00284 * 299.99910 * 17 16 15 41 41 H 1.48501 * 110.00179 * 58.68738 * 18 16 15 42 42 H 1.48501 * 109.99761 * 180.02562 * 18 16 15 43 43 H 1.07998 * 119.94198 * 180.02562 * 19 15 14 44 44 H 1.08005 * 120.06128 * 180.02562 * 20 19 15 45 45 H 1.08005 * 120.05623 * 180.02562 * 21 11 10 46 46 H 1.07998 * 119.94150 * 179.97438 * 22 21 11 47 47 H 1.07999 * 119.87625 * 180.02562 * 23 22 21 48 48 H 1.07999 * 119.93775 * 359.97438 * 24 10 9 49 49 H 1.08996 * 113.61612 * 25.43065 * 25 5 3 50 50 H 1.09003 * 113.61450 * 156.33341 * 25 5 3 51 51 H 1.09000 * 109.46659 * 59.99382 * 29 28 26 52 52 H 1.08991 * 109.46976 * 179.97438 * 29 28 26 53 53 H 1.09000 * 109.46527 * 300.00117 * 29 28 26 54 54 H 1.09000 * 113.61242 * 203.66189 * 30 5 3 55 55 H 1.08992 * 113.61462 * 334.57009 * 30 5 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2093 -0.0005 5 6 3.5663 1.2749 0.0006 6 7 4.1996 0.0817 0.5676 7 6 5.5409 -0.0467 0.5402 8 8 6.2294 0.8659 0.1350 9 6 6.1854 -1.3244 1.0128 10 6 7.6704 -1.2596 0.7648 11 6 8.5065 -0.6416 1.6922 12 6 7.9379 -0.0461 2.9267 13 6 8.1574 1.2983 3.2197 14 6 7.6210 1.8485 4.3662 15 6 6.8769 1.0650 5.2297 16 6 6.2993 1.6698 6.4834 17 8 4.8759 1.5464 6.4598 18 14 6.7650 3.4714 6.5751 19 6 6.6605 -0.2715 4.9466 20 6 7.1871 -0.8306 3.7999 21 6 9.8789 -0.5858 1.4567 22 6 10.4024 -1.1417 0.3074 23 6 9.5675 -1.7541 -0.6102 24 6 8.2055 -1.8175 -0.3789 25 6 4.1138 2.5934 0.5719 26 6 4.0317 3.1555 -0.8571 27 1 3.0705 3.6125 -1.0920 28 8 5.1423 3.9819 -1.2118 29 6 4.8257 5.0071 -2.1558 30 6 4.1612 1.7048 -1.3508 31 1 -0.3634 0.5139 0.8899 32 1 -0.3633 0.5137 -0.8901 33 1 -0.3634 -1.0277 -0.0005 34 1 3.6536 -0.6158 0.9629 35 1 6.0003 -1.4517 2.0793 36 1 5.7624 -2.1681 0.4674 37 1 8.7426 1.9097 2.5488 38 1 7.7868 2.8915 4.5921 39 1 6.6950 1.1475 7.3544 40 1 4.4551 1.9884 5.7097 41 1 6.2587 4.1885 5.3774 42 1 6.2019 4.0793 7.8074 43 1 6.0784 -0.8787 5.6241 44 1 7.0173 -1.8742 3.5795 45 1 10.5316 -0.1082 2.1726 46 1 11.4658 -1.0986 0.1237 47 1 9.9815 -2.1883 -1.5082 48 1 7.5588 -2.3011 -1.0960 49 1 3.4356 3.0808 1.2724 50 1 5.1322 2.5149 0.9525 51 1 4.0587 5.6601 -1.7394 52 1 5.7206 5.5904 -2.3724 53 1 4.4562 4.5528 -3.0751 54 1 5.1925 1.3833 -1.4959 55 1 3.5212 1.4747 -2.2025 There are 76 doubly filled levels RHF calculation, no. of doubly occupied orbitals= 76 No. of singly occupied orbitals= 1 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=0 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER s_22_14247462_13158394.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Sun Mar 7 2021 00:15:03 Heat of formation + Delta-G solvation = -90.884988 kcal Electronic energy + Delta-G solvation = -41618.541421 eV Core-core repulsion = 36554.155405 eV Total energy + Delta-G solvation = -5064.386016 eV No. of doubly occupied orbitals = 76 and no. of open levels = 1 Molecular weight (most abundant/longest-lived isotopes) = 412.181 amu Computer time = 2.28 seconds Orbital eigenvalues (eV) -42.79168 -41.41672 -40.72022 -39.84489 -39.24259 -37.89402 -37.68182 -37.05468 -34.62706 -34.08158 -33.28743 -31.94999 -30.70010 -29.64269 -28.69418 -27.81659 -27.15372 -26.61022 -26.05174 -24.00501 -23.45403 -23.19640 -22.79673 -21.83582 -21.34825 -20.59842 -19.46575 -18.62529 -18.42625 -17.88848 -17.83958 -17.46143 -17.39005 -17.08909 -17.02533 -16.65422 -16.43512 -16.24298 -16.19328 -15.84411 -15.58876 -15.45861 -15.36720 -15.09149 -14.82855 -14.68676 -14.63045 -14.43413 -14.10355 -13.99328 -13.81136 -13.72027 -13.64355 -13.51274 -13.28787 -13.18834 -13.12839 -12.83373 -12.55897 -12.41134 -12.36457 -12.31772 -12.11023 -12.01754 -11.97084 -11.89683 -11.74559 -11.63052 -10.71224 -10.65237 -10.60672 -10.25284 -10.11252 -9.90634 -9.69560 -9.18857 -4.97389 -0.05769 0.41651 0.43815 0.64691 0.67771 1.27408 1.27944 1.54914 1.55679 1.87214 1.89970 2.64421 2.76290 2.91490 3.12736 3.16980 3.37774 3.42547 3.53058 3.55376 3.68115 3.77810 3.88886 3.93295 3.97657 3.97932 4.05430 4.19795 4.22430 4.26054 4.33571 4.35377 4.38425 4.40582 4.44094 4.52977 4.55053 4.56655 4.58630 4.65150 4.65737 4.68394 4.73656 4.75871 4.77947 4.81387 4.90335 5.01878 5.05137 5.06280 5.14439 5.24223 5.38095 5.45405 5.50112 5.57318 5.63369 5.70020 5.96705 6.09468 6.16277 6.33350 6.41906 6.42394 7.16030 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.027 3.973 2 O -0.349 6.349 3 C 0.489 3.511 4 O -0.510 6.510 5 C 0.165 3.835 6 N -0.704 5.704 7 C 0.521 3.479 8 O -0.539 6.539 9 C -0.107 4.107 10 C -0.062 4.062 11 C -0.045 4.045 12 C -0.039 4.039 13 C -0.105 4.105 14 C -0.118 4.118 15 C -0.120 4.120 16 C -0.073 4.073 17 O -0.544 6.544 18 Si 0.750 3.250 19 C -0.092 4.092 20 C -0.114 4.114 21 C -0.118 4.118 22 C -0.126 4.126 23 C -0.125 4.125 24 C -0.116 4.116 25 C -0.123 4.123 26 C 0.068 3.932 27 H 0.098 0.902 28 O -0.389 6.389 29 C 0.022 3.978 30 C -0.145 4.145 31 H 0.066 0.934 32 H 0.064 0.936 33 H 0.137 0.863 34 H 0.421 0.579 35 H 0.124 0.876 36 H 0.133 0.867 37 H 0.121 0.879 38 H 0.134 0.866 39 H 0.130 0.870 40 H 0.383 0.617 41 H -0.292 1.292 42 H -0.300 1.300 43 H 0.137 0.863 44 H 0.144 0.856 45 H 0.129 0.871 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.139 0.861 49 H 0.078 0.922 50 H 0.107 0.893 51 H 0.049 0.951 52 H 0.096 0.904 53 H 0.050 0.950 54 H 0.118 0.882 55 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.778 -5.782 -0.884 5.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 O -0.265 6.265 3 C 0.331 3.669 4 O -0.398 6.398 5 C 0.076 3.924 6 N -0.359 5.359 7 C 0.309 3.691 8 O -0.416 6.416 9 C -0.146 4.146 10 C -0.063 4.063 11 C -0.045 4.045 12 C -0.039 4.039 13 C -0.123 4.123 14 C -0.136 4.136 15 C -0.120 4.120 16 C -0.183 4.183 17 O -0.351 6.351 18 Si 0.656 3.344 19 C -0.110 4.110 20 C -0.132 4.132 21 C -0.136 4.136 22 C -0.143 4.143 23 C -0.143 4.143 24 C -0.134 4.134 25 C -0.162 4.162 26 C 0.009 3.991 27 H 0.116 0.884 28 O -0.308 6.308 29 C -0.074 4.074 30 C -0.184 4.184 31 H 0.085 0.915 32 H 0.083 0.917 33 H 0.155 0.845 34 H 0.258 0.742 35 H 0.141 0.859 36 H 0.151 0.849 37 H 0.139 0.861 38 H 0.152 0.848 39 H 0.148 0.852 40 H 0.232 0.768 41 H -0.219 1.219 42 H -0.228 1.228 43 H 0.155 0.845 44 H 0.162 0.838 45 H 0.147 0.853 46 H 0.155 0.845 47 H 0.156 0.844 48 H 0.156 0.844 49 H 0.097 0.903 50 H 0.126 0.874 51 H 0.068 0.932 52 H 0.114 0.886 53 H 0.068 0.932 54 H 0.136 0.864 55 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -0.527 -4.404 -0.543 4.468 hybrid contribution -1.730 0.058 -0.621 1.839 sum -2.256 -4.346 -1.164 5.033 Atomic orbital electron populations 1.23681 0.73696 1.06298 1.02897 1.86455 1.25593 1.31399 1.83013 1.22697 0.89886 0.82191 0.72153 1.90719 1.66229 1.37183 1.45620 1.20829 0.85058 0.87893 0.98618 1.45536 1.07089 1.21409 1.61898 1.20896 0.81183 0.89685 0.77312 1.90745 1.63038 1.41661 1.46118 1.20927 0.91812 0.96092 1.05806 1.19370 0.93832 0.98334 0.94742 1.18691 0.93385 0.98460 0.93994 1.18857 0.97803 0.93473 0.93786 1.21213 0.99791 0.94544 0.96784 1.21052 0.98273 0.99763 0.94472 1.20329 0.99632 0.95087 0.96966 1.25068 0.82678 1.12018 0.98553 1.86564 1.18391 1.77814 1.52379 0.94179 0.91091 0.72924 0.76166 1.21061 0.98746 0.94263 0.96969 1.21394 0.97471 1.00356 0.93938 1.21357 0.94181 0.99937 0.98136 1.21357 1.00915 0.98014 0.94062 1.21458 0.93745 0.99253 0.99863 1.21207 0.95859 0.99752 0.96570 1.23556 1.03161 0.92148 0.97315 1.23510 0.90248 0.90063 0.95255 0.88416 1.87982 1.34188 1.45881 1.62717 1.22990 1.02530 0.90139 0.91744 1.23920 1.04109 0.95986 0.94344 0.91539 0.91706 0.84544 0.74166 0.85867 0.84924 0.86077 0.84823 0.85194 0.76771 1.21918 1.22785 0.84505 0.83810 0.85314 0.84465 0.84406 0.84354 0.90327 0.87438 0.93234 0.88587 0.93164 0.86353 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 -0.14 10.56 113.37 1.20 1.06 16 2 O -0.35 0.42 9.83 -51.44 -0.51 -0.09 16 3 C 0.49 1.49 7.14 71.23 0.51 2.00 16 4 O -0.51 -4.06 14.98 21.96 0.33 -3.73 16 5 C 0.17 0.48 1.75 3.38 0.01 0.48 16 6 N -0.70 0.84 5.39 -423.92 -2.28 -1.44 16 7 C 0.52 0.92 7.24 87.66 0.63 1.56 16 8 O -0.54 -5.08 11.72 -3.04 -0.04 -5.11 16 9 C -0.11 0.35 5.34 29.10 0.16 0.50 16 10 C -0.06 -0.10 4.39 -19.65 -0.09 -0.18 16 11 C -0.05 -0.16 5.37 -20.04 -0.11 -0.26 16 12 C -0.04 -0.10 4.90 -20.04 -0.10 -0.20 16 13 C -0.11 -0.40 9.63 22.48 0.22 -0.18 16 14 C -0.12 -0.22 8.65 22.24 0.19 -0.02 16 15 C -0.12 -0.08 5.40 -19.82 -0.11 -0.19 16 16 C -0.07 0.00 2.82 71.24 0.20 0.20 16 17 O -0.54 -1.38 12.76 -148.98 -1.90 -3.28 16 18 Si 0.75 0.35 29.78 68.60 2.04 2.39 16 19 C -0.09 0.03 9.59 22.24 0.21 0.24 16 20 C -0.11 0.07 7.74 22.48 0.17 0.24 16 21 C -0.12 -0.39 9.63 22.48 0.22 -0.17 16 22 C -0.13 -0.24 10.03 22.24 0.22 -0.02 16 23 C -0.13 -0.15 10.04 22.31 0.22 0.07 16 24 C -0.12 -0.11 9.67 22.24 0.21 0.10 16 25 C -0.12 -0.83 6.62 31.12 0.21 -0.63 16 26 C 0.07 0.49 3.90 31.12 0.12 0.61 16 27 H 0.10 0.63 7.04 -2.39 -0.02 0.61 16 28 O -0.39 -4.00 10.71 -148.98 -1.60 -5.60 16 29 C 0.02 0.08 10.85 113.37 1.23 1.31 16 30 C -0.15 -0.74 6.78 31.12 0.21 -0.52 16 31 H 0.07 -0.30 8.13 -2.39 -0.02 -0.32 16 32 H 0.06 -0.27 8.13 -2.39 -0.02 -0.29 16 33 H 0.14 -1.51 8.14 -2.39 -0.02 -1.53 16 34 H 0.42 -2.66 8.09 -92.71 -0.75 -3.41 16 35 H 0.12 -0.70 4.74 -2.39 -0.01 -0.71 16 36 H 0.13 -1.19 8.05 -2.39 -0.02 -1.21 16 37 H 0.12 0.54 8.06 -2.91 -0.02 0.52 16 38 H 0.13 -0.07 4.86 -2.91 -0.01 -0.09 16 39 H 0.13 -0.29 7.96 -2.39 -0.02 -0.31 16 40 H 0.38 -0.71 8.70 -74.06 -0.64 -1.35 16 41 H -0.29 -1.70 7.11 99.48 0.71 -1.00 16 42 H -0.30 -2.29 7.11 99.48 0.71 -1.58 16 43 H 0.14 -0.32 8.06 -2.91 -0.02 -0.35 16 44 H 0.14 -0.65 7.20 -2.91 -0.02 -0.67 16 45 H 0.13 0.16 8.06 -2.91 -0.02 0.13 16 46 H 0.14 -0.24 8.06 -2.91 -0.02 -0.26 16 47 H 0.14 -0.36 8.06 -2.91 -0.02 -0.38 16 48 H 0.14 -0.44 8.06 -2.91 -0.02 -0.46 16 49 H 0.08 0.51 7.86 -2.39 -0.02 0.50 16 50 H 0.11 1.15 6.23 -2.39 -0.01 1.14 16 51 H 0.05 0.10 8.14 -2.39 -0.02 0.08 16 52 H 0.10 0.14 8.14 -2.39 -0.02 0.12 16 53 H 0.05 0.08 8.14 -2.39 -0.02 0.06 16 54 H 0.12 1.06 5.70 -2.39 -0.01 1.05 16 55 H 0.08 0.21 8.09 -2.39 -0.02 0.20 16 Total: 0.00 -21.78 449.10 1.39 -20.40 By element: Atomic # 1 Polarization: -9.13 SS G_CDS: -0.41 Total: -9.53 kcal Atomic # 6 Polarization: 0.26 SS G_CDS: 5.75 Total: 6.00 kcal Atomic # 7 Polarization: 0.84 SS G_CDS: -2.28 Total: -1.44 kcal Atomic # 8 Polarization: -14.10 SS G_CDS: -3.71 Total: -17.81 kcal Atomic # 14 Polarization: 0.35 SS G_CDS: 2.04 Total: 2.39 kcal Total: -21.78 1.39 -20.40 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. s_22_14247462_13158394.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.490 kcal (2) G-P(sol) polarization free energy of solvation -21.784 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -20.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.885 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.28 seconds